BAC Information

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BAC

Clone NameB6Ng01-129O06
Chromosome6 (Build37)
Map Location 9,201,443 - 9,373,782
singlet/doubletdoublet
Overlap genenone
Upstream geneRpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129O06.bB6Ng01-129O06.g
ACCDH931358DH931359
length1,1371,157
definitionDH931358|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O06, 5' end.DH931359|Mus musculus domesticus DNA, BAC clone: B6Ng01-129O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,201,443 - 9,202,596)(9,372,594 - 9,373,782)
sequence
gaattcacctgtgtagcgtcagcacaatccttaaaacctgattactgggt
catccttttgaagagatttcagacacatgtgtgtcagagaatggttgctg
ggaaacactgagaatgttaggacctgctctccaaattttatatccaattt
aaaaaatggttgaagtaaaatatataattatgtttcttttaactagggtg
gaaaaatgcaagtcttacaaataaaaaattttagttttgagttttcctct
gagcaatgttaagagaaacattctagaatgagtgccatgcatctgggaaa
atgtcttaagtttgaccaaataaactttaatgtttttatttctgccttgc
aggaacatgcatcatatcattgataagtaacagggaggtggctacactac
taggaaagtaagctgagctgcctttccttggtggctgcagcagctattgc
taggggaagtctaggtctattctaggtttgaacctggattagacactcac
ctccattcttctctgggtagcctttgctgtcctggatttatttgctctat
agctcaggctggccttgaatgagtagattcacatgcagggattaaaggca
tgcacccacaacaccccagcccccacagccatttctatttccacctggct
ggcactgttttattattaaagattctgtgtttggacctcacatagcagct
ctagcattcctagtctctgattctcttgtctaatcaaacaagtgtttgga
cttaatccttgtaattgtgactgttgaagaaatacagcaagagctttggt
aacatgcagcaactgctaagtaactgcatttaatacacacacacacacac
acacacacacacacacacacacaactgtcattgtcaaaattaattcttta
cctttctgaatccaactttcatattaagctatttctgtacttattttttt
gagttgctaacagtgtttcagagatggatatcacatgatacctgttcagt
ggatggtatgatttcacattcaggaacttcagaacacagttcctaataca
aatgcaccttggcccagctgagcagagtcagctctgattatcactgcatt
caccaacgtagcaggcaggtcatttcccactactatt

gaattcattcctttttgttgttgttgttagcctgtagcctagtaaatgag
gtatatctgagctggataaacaataatggacatagactgttcatgacaca
tttgtggctacacatatagaagcacatataccatatgaccattaaaaatg
ggtcagaacttattttcagatgataccaagaagacatttttcttttaatt
tctttccaaggtaacaaattgtctagctccagaatgttgcttaccactac
tggctgtggccttagggactggttactttattacctttctgaactgtact
tcaaaggaattaattaattgatgttcttagcggcctcatcttgacaaaaa
catatgatactcaaatgttaaacatggaacctcggatggaactgtcagga
aaatgctgaacgtggttattaatatggcttttgataaatatctgctcagc
ctcacactgtgcctcgtctgttctcatcttggaaagtagttaatctgatt
gatgaagatcctggctcagatcgtctcccatgctgggtttaatagcagca
cttaaaaaaagaaaagaaaagaaaaaattcttattttcaagtagagatgt
ttgtgtcttcccatttggcagggtttttgtttggggcgggggtacagaat
actgctattagaattgtcctgagcattacccaaaatagcaggaattcctt
aagttacacagtgcacaagaagcctgcattctagaccaatacttggggaa
gtattctttgatagtgtttcatcaattggcattctaacccttaaggctta
gaagagccagcctatcagaacaaacatgcagctagcaactgatagactac
aagccttagctcattatcaatatccatcttccctaagaagacttgatttg
tttttctcatattaaataatctccttgcagatgaagcagtcacagcagtg
gttgccacagtacacattgctaagcttatgccatccacactgttacttct
gcaaccattgcatttctgcaacatctcaatggctaagagttacgtgcttt
actggacagaaatttgcagacttagttcaaattaactctttcagtgagaa
atctgaagaagtgtctaacagaatcagacctctaagtctcacagaaccta
atggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9201443_9202596
seq2: B6Ng01-129O06.b_47_1183

seq1  GAATTCACCTGTGTAGCGTCAGCACAATCCTTAAAACCTGATTACTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTGTAGCGTCAGCACAATCCTTAAAACCTGATTACTGGGT  50

seq1  CATCCTTTTGAAGAGATTTCAGACACATGTGTGTCAGAGAATGGTTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTTGAAGAGATTTCAGACACATGTGTGTCAGAGAATGGTTGCTG  100

seq1  GGAAACACTGAGAATGTTAGGACCTGCTCTCCAAATTTTATATCCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACTGAGAATGTTAGGACCTGCTCTCCAAATTTTATATCCAATTT  150

seq1  AAAAAATGGTTGAAGTAAAATATATAATTATGTTTCTTTTAACTAGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGTTGAAGTAAAATATATAATTATGTTTCTTTTAACTAGGGTG  200

seq1  GAAAAATGCAAGTCTTACAAATAAAAAATTTTAGTTTTGAGTTTTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGCAAGTCTTACAAATAAAAAATTTTAGTTTTGAGTTTTCCTCT  250

seq1  GAGCAATGTTAAGAGAAACATTCTAGAATGAGTGCCATGCATCTGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGTTAAGAGAAACATTCTAGAATGAGTGCCATGCATCTGGGAAA  300

seq1  ATGTCTTAAGTTTGACCAAATAAACTTTAATGTTTTTATTTCTGCCTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAAGTTTGACCAAATAAACTTTAATGTTTTTATTTCTGCCTTGC  350

seq1  AGGAACATGCATCATATCATTGATAAGTAACAGGGAGGTGGCTACACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATGCATCATATCATTGATAAGTAACAGGGAGGTGGCTACACTAC  400

seq1  TAGGAAAGTAAGCTGAGCTGCCTTTCCTTGGTGGCTGCAGCAGCTATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGTAAGCTGAGCTGCCTTTCCTTGGTGGCTGCAGCAGCTATTGC  450

seq1  TAGGGGAAGTCTAGGTCTATTCTAGGTTTGAACCTGGATTAGACACTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAAGTCTAGGTCTATTCTAGGTTTGAACCTGGATTAGACACTCAC  500

seq1  CTCCATTCTTCTCTGGGTAGCCTTTGCTGTCCTGGATTTATTTGCTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTTCTCTGGGTAGCCTTTGCTGTCCTGGATTTATTTGCTCTAT  550

seq1  AGCTCAGGCTGGCCTTGAATGAGTAGATTCACATGCAGGGATTAAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCTGGCCTTGAATGAGTAGATTCACATGCAGGGATTAAAGGCA  600

seq1  TGCACCCACAACACCCCAGCCCCCACAGCCATTTCTATTTCCACCTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCACAACACCCCAGCCCCCACAGCCATTTCTATTTCCACCTGGCT  650

seq1  GGCACTGTTTTATTATTAAAGATTCTGTGTTTGGACCTCACATAGCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTTTTATTATTAAAGATTCTGTGTTTGGACCTCACATAGCAGCT  700

seq1  CTAGCATTCCTAGTCTCTGATTCTCTTGTCTAATCAAACAAGTGTTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTCCTAGTCTCTGATTCTCTTGTCTAATCAAACAAGTGTTTGGA  750

seq1  CTTAATCCTTGTAATTGTGACTGTTGAAGAAATACAGCAAGAGCTTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCTTGTAATTGTGACTGTTGAAGAAATACAGCAAGAGCTTTGGT  800

seq1  AACATGCAGCAACTGCTAAGTAACTGCATTTAAATACACACACACACACA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACATGCAGCAACTGCTAAGTAACTGCATTT-AATACACACACACACACA  849

seq1  CACACACACACACACACACACACAACTGTCATTGTCAAAATTAATTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAACTGTCATTGTCAAAATTAATTCTTT  899

seq1  ACCCTTTCTGAAATCCAACTTTCATATTAAGCTTATTTCTGTACTTATTT  950
      | |||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  A-CCTTTCTG-AATCCAACTTTCATATTAAGC-TATTTCTGTACTTATTT  946

seq1  TTTTGAGTTGCTAACAGTGTTTCAGGAGAATGGATATCACATGATACCTG  1000
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  TTTTGAGTTGCTAACAGTGTTTCA-GAG-ATGGATATCACATGATACCTG  994

seq1  TTCAGTGGATGGTTATGATTTCACATTCAGGAAACTTCAG-ACACAGTTC  1049
      |||||||||||| |||||||||||||||||| |||||||| |||||||||
seq2  TTCAGTGGATGG-TATGATTTCACATTCAGG-AACTTCAGAACACAGTTC  1042

seq1  CT-ATACAAATGCCAACCCTGGCCCCAGCTGAGGCAGAGGTCAGCTCTGA  1098
      || ||||||||||  ||| ||| ||||||||| ||||| |||||||||||
seq2  CTAATACAAATGC--ACCTTGG-CCCAGCTGA-GCAGA-GTCAGCTCTGA  1087

seq1  TTATCACTGCCAATTCACCAACGTAGCAGGCAAGGTCATTTTCCCAAACT  1148
      ||||||||||  ||||||||||||||||||| ||||||||| ||   |||
seq2  TTATCACTGC--ATTCACCAACGTAGCAGGC-AGGTCATTTCCC---ACT  1131

seq1  ACTATT  1154
      ||||||
seq2  ACTATT  1137


seq1: chr6_9372594_9373782
seq2: B6Ng01-129O06.g_70_1226 (reverse)

seq1  TCACCATATTTAGGTTCTCTGTAAGAACAGTATGAGCTCTGA-TCTGCTG  49
      ||||||   ||||||||| ||     | | |  ||| ||||| |||| | 
seq2  TCACCA---TTAGGTTCTGTG-----AGACTTAGAGGTCTGATTCTG-TT  41

seq1  AGACATCTCTTCAGTATTCCTCCACTGAGACAGATTAATTTTTGAACTAC  99
      |||||  ||||||| ||| || |||||| | || ||||  ||||||||| 
seq2  AGACACTTCTTCAG-ATTTCT-CACTGAAAGAG-TTAA--TTTGAACTAA  86

seq1  GTTCTTGCAATTTTCTGTCCAGTAAATGCCACGTTAACTCTTAGCCATTG  149
      ||   ||||| |||||||||||||||   |||| ||||||||||||||||
seq2  GT--CTGCAAATTTCTGTCCAGTAAA--GCACG-TAACTCTTAGCCATTG  131

seq1  AGATGGTTGCAGGAAATGCAAATGGTTTTGCAGAAGTTACAGTGTGGATG  199
      |||| |||||| ||||||| |||||  |||||||||| ||||||||||||
seq2  AGAT-GTTGCA-GAAATGC-AATGG--TTGCAGAAGTAACAGTGTGGATG  176

seq1  GCATAAAGCCTAAGCCATTGTGTACTGTGGCAACCACTGCTGTGACTGCT  249
      |||| |||| ||   || ||||||||||||||||||||||||||||||||
seq2  GCAT-AAGCTTA--GCAATGTGTACTGTGGCAACCACTGCTGTGACTGCT  223

seq1  TCATCTGCAAGGGAGATTATTTAAATTATGAGAAAAACAAATCAAGTC-T  298
      |||||||||| |||||||||||||  |||||||||||||||||||||| |
seq2  TCATCTGCAA-GGAGATTATTTAA--TATGAGAAAAACAAATCAAGTCTT  270

seq1  CTTAGGGGAAGATGGATATTGATAATGAGCTAAGGCTTGTAGTCTATCAG  348
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTA-GGGAAGATGGATATTGATAATGAGCTAAGGCTTGTAGTCTATCAG  319

seq1  TTGCTAGCTGCATGTTTTGTTCTGATAGGCTGGCTCTTCTAAGCCTTAAG  398
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCTGCATG-TTTGTTCTGATAGGCTGGCTCTTCTAAGCCTTAAG  368

seq1  GGTTAGAATTGCCAATTGATTGAAACACTATCAAAGAATACTTCCCCAAG  448
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  GGTTAGAA-TGCCAATTGA-TGAAACACTATCAAAGAATACTTCCCCAAG  416

seq1  TATTGGTCTAGAATGCAGGCTTCTTGTGCACTGTGTAACTTAAGGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTCTAGAATGCAGGCTTCTTGTGCACTGTGTAACTTAAGGAATTC  466

seq1  CTGCTATTTTGGGTAATGCTCAGGACAATTCTAATAGCAGTATTCTGTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTTTGGGTAATGCTCAGGACAATTCTAATAGCAGTATTCTGTAC  516

seq1  CCCCGCCCCAAACAAAAACCCTGCCAAATGGGAAGACACAAACATCTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCCAAACAAAAACCCTGCCAAATGGGAAGACACAAACATCTCTA  566

seq1  CTTGAAAATAAGAATTTTTTCTTTTCTTTTCTTTTTTTAAGTGCTGCTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAATAAGAATTTTTTCTTTTCTTTTCTTTTTTTAAGTGCTGCTAT  616

seq1  TAAACCCAGCATGGGAGACGATCTGAGCCAGGATCTTCATCAATCAGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCAGCATGGGAGACGATCTGAGCCAGGATCTTCATCAATCAGATT  666

seq1  AACTACTTTCCAAGATGAGAACAGACGAGGCACAGTGTGAGGCTGAGCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTCCAAGATGAGAACAGACGAGGCACAGTGTGAGGCTGAGCAG  716

seq1  ATATTTATCAAAAGCCATATTAATAACCACGTTCAGCATTTTCCTGACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCAAAAGCCATATTAATAACCACGTTCAGCATTTTCCTGACAG  766

seq1  TTCCATCCGAGGTTCCATGTTTAACATTTGAGTATCATATGTTTTTGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCGAGGTTCCATGTTTAACATTTGAGTATCATATGTTTTTGTCA  816

seq1  AGATGAGGCCGCTAAGAACATCAATTAATTAATTCCTTTGAAGTACAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGCCGCTAAGAACATCAATTAATTAATTCCTTTGAAGTACAGTT  866

seq1  CAGAAAGGTAATAAAGTAACCAGTCCCTAAGGCCACAGCCAGTAGTGGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGTAATAAAGTAACCAGTCCCTAAGGCCACAGCCAGTAGTGGTA  916

seq1  AGCAACATTCTGGAGCTAGACAATTTGTTACCTTGGAAAGAAATTAAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATTCTGGAGCTAGACAATTTGTTACCTTGGAAAGAAATTAAAAG  966

seq1  AAAAATGTCTTCTTGGTATCATCTGAAAATAAGTTCTGACCCATTTTTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTCTTCTTGGTATCATCTGAAAATAAGTTCTGACCCATTTTTAA  1016

seq1  TGGTCATATGGTATATGTGCTTCTATATGTGTAGCCACAAATGTGTCATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATATGGTATATGTGCTTCTATATGTGTAGCCACAAATGTGTCATG  1066

seq1  AACAGTCTATGTCCATTATTGTTTATCCAGCTCAGATATACCTCATTTAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTATGTCCATTATTGTTTATCCAGCTCAGATATACCTCATTTAC  1116

seq1  TAGGCTACAGGCTAACAACAACAACAAAAAGGAATGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTACAGGCTAACAACAACAACAAAAAGGAATGAATTC  1157


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