BAC Information

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BAC

Clone NameB6Ng01-130J11
Chromosome6 (Build37)
Map Location 109,126,964 - 109,240,771
singlet/doubletdoublet
Overlap geneLOC639110
Upstream geneSumf1, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
Downstream geneLOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130J11.bB6Ng01-130J11.g
ACCDH931866DH931867
length1,104988
definitionDH931866|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J11, 5' end.DH931867|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,239,641 - 109,240,771)(109,126,964 - 109,127,962)
sequence
gaattctcttggacatttcaatcttgcttctagtatatggcaataaatac
ttcgaacattattctgggctttaatattttgcatcactagtccgcctcac
agctttgtgcatgactgttaaactgagtacagtactagcctttcagatgg
ataatgttgccagggaaacagtctacctaacctcccagcatgctggtata
ccagatgattgggcaagcatgcagtgctagtacaaaacaaaacacagctg
gaaaactgccctcaaaaaccttagagatgtgaagtcccatagagactttt
ttttttttttttacaatccaaatacctacccagccaggtattttcctaga
attttacagagtgggaaatatcaatagagcatctgcagagtagggaagag
ggcaaaggaaacatgaacagccagtattgggaaaatttaagagaacttta
ttgactgcgccctggaaactgccaactctacatcctacctggtgtttaaa
catatctactctgatggaattaaaataaaatgtgtataaaagggtaagtc
atgtctctgctggaagtggtatattccacaaaagaaatcacttggcttgg
tctagtgaaagttttgatggccatactggagaggtgcttctggacatagg
tagggatgctggtcaacatcctataatatatagactccaaccaactgaat
aatatattcccaataccccagaggtcaagaagcctaattaagaagaaatg
gggagtgaggactacaaaagccacacagcttctgggactagcagaagtaa
cacagcttcagggacatacccagttgtgggctccagatatccgggcacct
tccccgccagaggaaaggtatccactcagagggctctaccagagcagtga
gggagccatctggtcccggatccctcagagtttagtctgcccagtgagag
tgcagtctacagaagcgacacagctctggacagcagaagctacacagcta
ctggaagacccattttggctcagacatttgggcacttacgcagaaaaaag
tgtctaccagagtctctgactacaggcagtgaagagcatcttgtgtctgt
gtcc
gaattctttcatcaaaatttcagtactcgcctctaaaggaaaaggatgag
aatgaggtttcagcttggggcagagtgactcaagtcaggtcatgagcctc
ctgactcacccaatgcaggcttatatttaaattaaacacagatgttgatg
tcacggaaataatggaatgagtttgcaagagatggttactatttgaatgt
gggagttaaatgaagccagctgcatttaggggttctatgtcattcattac
cttcacccaatctttggcctttcagtttgaggcatggcagagataaacct
attagagaggttatctatcagctatccatctaaccatgagtcactcatac
agttacccatccacacttctgggactgggaccaactttatgtttctctta
ggttttaggtaagaaattcatccaaggcacaggtataaaaagttagggtg
aaaaaaaagggagaaaagagaattgttgctgtcaaaaagcacagtttagc
actattctgaatcttcaatatttgtgtaaaaaaaaatacaaatagtaccc
gtccttgatttgtcttcttgttaggatcaatttgctcagattactgacag
acttcttctgtttgtgacatggcatcacttgttcctgaagtcatgtaact
gtaaagtgttggcagttctgtgtctcagttttcaagcctgtaaaagttaa
tgccagttcaactatcttagattattgtgaagattaaatgaggtaataat
acatcagacttgaaggttagggtctaaagtctaggatccacatgtttttc
ttagtcattgagtgttttaatgccccacttcatacccacatagtttgatg
atactaaaatgcaacaaaattgtcttatttatgggaccttcttgtctatt
gagacccacatccagcccaaccataaaaaaaggatgattaataattataa
aaggacctgagaacaagtaggagaagttttccatcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109239641_109240771
seq2: B6Ng01-130J11.b_47_1150 (reverse)

seq1  GGACACAGGACACAAGATGACTCTCTCACCTGCTCTGGTAGTCAGAGACC  50
      ||||||| ||||||||||| |||| ||| |||| || ||||||||||| |
seq2  GGACACA-GACACAAGATG-CTCT-TCA-CTGC-CT-GTAGTCAGAGA-C  43

seq1  TCCTGGGTAGACACTTCTCTTCTGGCCGGTAAGGTGCCCAAATGTCTGGA  100
      ||   ||||||||||| | |||||    |||| |||||||||||||| ||
seq2  TC--TGGTAGACACTT-TTTTCTG---CGTAA-GTGCCCAAATGTCT-GA  85

seq1  GCCAAAAATGGGGTCTGTCCCAGTAGCTGTGTAGCTTCTGCCTGTCCCAG  150
      ||| ||||||||   | | ||||||||||||||||||||| |||| ||||
seq2  GCC-AAAATGGG---TCTTCCAGTAGCTGTGTAGCTTCTG-CTGT-CCAG  129

seq1  AAGCTGTGTCGCTTCTGTAGACTGCACTCTCACCTGGGCAGACTAAACTC  200
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  -AGCTGTGTCGCTTCTGTAGACTGCACTCTCA-CTGGGCAGACTAAACTC  177

seq1  TGAGGGATCCGGGACCCAAGATGGCTCCCTCACCTGCTCTGGTAGAGCCC  250
      ||||||||||||||||  |||||||||||||| |||||||||||||||||
seq2  TGAGGGATCCGGGACC--AGATGGCTCCCTCA-CTGCTCTGGTAGAGCCC  224

seq1  TCCTGAGTGGATACCTTTCCTCTGGCGGGGAAGGTGCCCGGATATCTGGA  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTGAGTGGATACCTTTCCTCTGGCGGGGAAGGTGCCCGGATATCTGGA  273

seq1  GCCCACAACTGGGTATGTCCCTGAAGCTGTGTTACTTCTGCTAGTCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAACTGGGTATGTCCCTGAAGCTGTGTTACTTCTGCTAGTCCCAG  323

seq1  AAGCTGTGTGGCTTTTGTAGTCCTCACTCCCCATTTCTTCTTAATTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGTGGCTTTTGTAGTCCTCACTCCCCATTTCTTCTTAATTAGGC  373

seq1  TTCTTGACCTCTGGGGTATTGGGAATATATTATTCAGTTGGTTGGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGACCTCTGGGGTATTGGGAATATATTATTCAGTTGGTTGGAGTCT  423

seq1  ATATATTATAGGATGTTGACCAGCATCCCTACCTATGTCCAGAAGCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATAGGATGTTGACCAGCATCCCTACCTATGTCCAGAAGCACCT  473

seq1  CTCCAGTATGGCCATCAAAACTTTCACTAGACCAAGCCAAGTGATTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTATGGCCATCAAAACTTTCACTAGACCAAGCCAAGTGATTTCTT  523

seq1  TTGTGGAATATACCACTTCCAGCAGAGACATGACTTACCCTTTTATACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAATATACCACTTCCAGCAGAGACATGACTTACCCTTTTATACAC  573

seq1  ATTTTATTTTAATTCCATCAGAGTAGATATGTTTAAACACCAGGTAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTAATTCCATCAGAGTAGATATGTTTAAACACCAGGTAGGAT  623

seq1  GTAGAGTTGGCAGTTTCCAGGGCGCAGTCAATAAAGTTCTCTTAAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTTGGCAGTTTCCAGGGCGCAGTCAATAAAGTTCTCTTAAATTTT  673

seq1  CCCAATACTGGCTGTTCATGTTTCCTTTGCCCTCTTCCCTACTCTGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACTGGCTGTTCATGTTTCCTTTGCCCTCTTCCCTACTCTGCAGA  723

seq1  TGCTCTATTGATATTTCCCACTCTGTAAAATTCTAGGAAAATACCTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTATTGATATTTCCCACTCTGTAAAATTCTAGGAAAATACCTGGCT  773

seq1  GGGTAGGTATTTGGATTGTAAAAAAAAAAAAAAAAGTCTCTATGGGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTATTTGGATTGTAAAAAAAAAAAAAAAAGTCTCTATGGGACTT  823

seq1  CACATCTCTAAGGTTTTTGAGGGCAGTTTTCCAGCTGTGTTTTGTTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTAAGGTTTTTGAGGGCAGTTTTCCAGCTGTGTTTTGTTTTGT  873

seq1  ACTAGCACTGCATGCTTGCCCAATCATCTGGTATACCAGCATGCTGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCACTGCATGCTTGCCCAATCATCTGGTATACCAGCATGCTGGGAG  923

seq1  GTTAGGTAGACTGTTTCCCTGGCAACATTATCCATCTGAAAGGCTAGTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTAGACTGTTTCCCTGGCAACATTATCCATCTGAAAGGCTAGTAC  973

seq1  TGTACTCAGTTTAACAGTCATGCACAAAGCTGTGAGGCGGACTAGTGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCAGTTTAACAGTCATGCACAAAGCTGTGAGGCGGACTAGTGATG  1023

seq1  CAAAATATTAAAGCCCAGAATAATGTTCGAAGTATTTATTGCCATATACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTAAAGCCCAGAATAATGTTCGAAGTATTTATTGCCATATACT  1073

seq1  AGAAGCAAGATTGAAATGTCCAAGAGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  AGAAGCAAGATTGAAATGTCCAAGAGAATTC  1104

seq1: chr6_109126964_109127962
seq2: B6Ng01-130J11.g_68_1055

seq1  GAATTCTTTCATCAAAATTTCAGTACTCGCCTCTAAAGGAAAAGGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATCAAAATTTCAGTACTCGCCTCTAAAGGAAAAGGATGAG  50

seq1  AATGAGGTTTCAGCTTGGGGCAGAGTGACTCAAGTCAGGTCATGAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTTTCAGCTTGGGGCAGAGTGACTCAAGTCAGGTCATGAGCCTC  100

seq1  CTGACTCACCCAATGCAGGCTTATATTTAAATTAAACACAGATGTTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCACCCAATGCAGGCTTATATTTAAATTAAACACAGATGTTGATG  150

seq1  TCACGGAAATAATGGAATGAGTTTGCAAGAGATGGTTACTATTTGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGAAATAATGGAATGAGTTTGCAAGAGATGGTTACTATTTGAATGT  200

seq1  GGGAGTTAAATGAAGCCAGCTGCATTTAGGGGTTCTATGTCATTCATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTAAATGAAGCCAGCTGCATTTAGGGGTTCTATGTCATTCATTAC  250

seq1  CTTCACCCAATCTTTGGCCTTTCAGTTTGAGGCATGGCAGAGATAAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCAATCTTTGGCCTTTCAGTTTGAGGCATGGCAGAGATAAACCT  300

seq1  ATTAGAGAGGTTATCTATCAGCTATCCATCTAACCATGAGTCACTCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAGGTTATCTATCAGCTATCCATCTAACCATGAGTCACTCATAC  350

seq1  AGTTACCCATCCACACTTCTGGGACTGGGACCAACTTTATGTTTCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCCATCCACACTTCTGGGACTGGGACCAACTTTATGTTTCTCTTA  400

seq1  GGTTTTAGGTAAGAAATTCATCCAAGGCACAGGTATAAAAAGTTAGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAGGTAAGAAATTCATCCAAGGCACAGGTATAAAAAGTTAGGGTG  450

seq1  AAAAAAAAGGGAGAAAAGAGAATTGTTGCTGTCAAAAAGCACAGTTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGGAGAAAAGAGAATTGTTGCTGTCAAAAAGCACAGTTTAGC  500

seq1  ACTATTCTGAATCTTCAATATTTGTGTAAAAAAAAATACAAATAGTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTGAATCTTCAATATTTGTGTAAAAAAAAATACAAATAGTACCC  550

seq1  GTCCTTGATTTGTCTTCTTGTTAGGATCAATTTGCTCAGATTACTGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGATTTGTCTTCTTGTTAGGATCAATTTGCTCAGATTACTGACAG  600

seq1  ACTTCTTCTGTTTGTGACATGGCATCACTTGTTCCTGAAGTCATGTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTGTTTGTGACATGGCATCACTTGTTCCTGAAGTCATGTAACT  650

seq1  GTAAAGTGTTGGCAGTTCTGTGTCTCAGTTTTCAAGCCTGTAAAAGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGTTGGCAGTTCTGTGTCTCAGTTTTCAAGCCTGTAAAAGTTAA  700

seq1  TGCCAGTTCAACTATCTTAGATTATTGTGAAGATTAAATGAGGTAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCCAGTTCAACTATCTTAGATTATTGTGAAGATTAAATGAGGTAAT-AA  749

seq1  TACATCAGACTTGAAGGTTAGGGTCTAAAGTCTAGGATCCAACATGTTTT  800
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  TACATCAGACTTGAAGGTTAGGGTCTAAAGTCTAGGATCC-ACATG-TTT  797

seq1  TTCTTAGTCATTGAGTGTTTTAATG-CCCACTTCATA-CCACATAGTTTG  848
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TTCTTAGTCATTGAGTGTTTTAATGCCCCACTTCATACCCACATAGTTTG  847

seq1  ATGATACTAAAAATGCAACAAAATTGTCTTATTTAT-GGAACTTCTTGTC  897
      |||||||| ||||||||||||||||||||||||||| ||| |||||||||
seq2  ATGATACT-AAAATGCAACAAAATTGTCTTATTTATGGGACCTTCTTGTC  896

seq1  TAATGAGACACACAATCAAAGCCAAACCAATATAAAAAAGGAATGATTAT  947
      || |||||| ||||  |  |||| ||||   |||||||| | ||||||| 
seq2  TATTGAGACCCACATCC--AGCCCAACC---ATAAAAAAAGGATGATTA-  940

seq1  ATAATATAAAAAGGAACCTAGAGAACAAAGTAGGAGAAAGTTTTCCATCA  997
      ||||| || ||| | |||| |||||| ||||||||| |||||||||||||
seq2  ATAAT-TATAAAAGGACCT-GAGAAC-AAGTAGGAG-AAGTTTTCCATCA  986

seq1  AT  999
      ||
seq2  AT  988