BAC Information

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BAC

Clone NameB6Ng01-130J12
Chromosome6 (Build37)
Map Location 103,589,309 - 103,590,379
singlet/doubletsinglet
Overlap geneChl1
Upstream geneLOC666141
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130J12.bB6Ng01-130J12.g
ACCDH931868DH931869
length1,0991,067
definitionDH931868|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J12, 5' end.DH931869|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaggggtcgaggggaagcaagcaatttgagtgcccacattcat
ctctgtttcctggctatgtttgcgacatgaccagccaatttatgcttttg
ccaacaagccttcttgctgtggtggactgtaaaatcacttaaaccacgag
gcaaaatatgtccttatgttgttaaggtgccttctgccagatatttaatg
acagaagtgacaaaggtaactagtataagaatcttgctcaatttaacagt
gttgattcttcagatccatgaacatagggttgtttttttttttaatttat
ttatttttctgtcttctctataattctagcagcaattgaggtttttatta
ttgatgtttcccttccttggttatatgtattgctaagatatgttttagct
gttatgagggattgttggttttttctttcacaaagtccattactgtcacg
taaatgtgatattctacaacactgatctttgtaggctgaagctttactaa
gatcagttctcacacctttttaatagaatgttgaggtttttctatatggg
caatcatattctctaaaaacatgggtaatttaactccttttcactttcgc
aaatccttacctcttgctcttgctcttgttaatactttcaattgtataaa
aagttctaaaagttttggtccttgccacagtcctggtcttataagaaaca
cttaccagtccaatgtgatattagctatactatctttcccatgttattta
ttgtgtgtgtatgtatgtatatgtgtgactgtatatgcacacactcttgc
acatacatgcctgtgatatggcacatgggaggaagtcagagaacaaccta
tgtgagttgattctcttgtcatgtggatcccagaaagagaactgtgattg
gtaggttggcagcaagcattctttactctctgatccagctcaacagctga
tttttcacaaacagcatttagtatttgaggtatattcctagtatacctgt
tatatggaggaattttatcataagaagatgtggagtttaccaaattttac
catacttacaaaaatattggttgtattgttgttgtagtggacatgttgg
gaattcaattgctaacactgcaaaaccaaaagatattaagaggtaactga
gcctgttcatctcagtttcttttgctgtggctatgacgataaaaatactc
tgacaacttaaaaggtcagtacagtctatatcatgactgagaaatcaagg
cagcaagagcttcgagagccaggtcacattgccttcaatctagaaacaga
catgagtgtaagcctgtggctgttctttttcctttgcaacatacagagtc
cacaatcctagccagggattagtgccatccactcagatgggctttctcac
cccaactaccacactagagataacgtccccaaagaatagccataggcata
gctcctagggaattctagattctgtcaagttgacaacactagacatcact
tgtatcttccctatacatgactaatggcatttaaagtgctaaatagacaa
ataaataaatacacccaaatccaaacaaacaaaaaattccaaacaaaagc
aaggaacacacacacacacacacacacacacacacacacacacacacaca
tctgagttctacacattagcataaagattcaaaacactctgtctagttta
aaattgaaatctctaaagaaaatattaacatttttccctttgaattttcc
tttcctttcttcgtatacacacacacacacacacacacacacacatttat
atatctcataatatatatgtatgtatacatgcatatatatatgtatatat
gatgatttagggcatactcattgtcagcagctcctttttgtacattgaca
ttgagcaactttacaatgaccttgaagcacaggttctcttttaataacaa
ttttctcagaagatattaattagaaaacatttttattttatgattatatt
tttgccagattaatttgtccatctgaaaaaatgggaatcttgaaaaccag
ttaccttgctaagaacatttacaagtatgataccttaaggaaatatcact
gatgattgaccgctctttccttgtgaaatgactaaatgtatcaacataat
tgcataagaaattgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103589309_103590379
seq2: B6Ng01-130J12.g_69_1135 (reverse)

seq1  AAGCAATATTCTTATGCAATTTATTGTTGATTACATTTAGTCATTTCACA  50
      ||||||| |||||||||||||   |||||| |||||||||||||||||||
seq2  AAGCAAT-TTCTTATGCAATT--ATGTTGA-TACATTTAGTCATTTCACA  46

seq1  AGGAAAATGAGCTGTCAATCATCAGTGATATTTCTTTAAGTTATCATACT  100
      ||||||  |||| ||||||||||||||||||||| ||||| |||||||||
seq2  AGGAAA--GAGCGGTCAATCATCAGTGATATTTCCTTAAGGTATCATACT  94

seq1  TGTAAATGTTCTTAAGCAAGGGTAACTGGTTTTC-AGATTCCCATTTTTT  149
      ||||||||||||| ||||| |||||||||||||| |||||||||||||||
seq2  TGTAAATGTTCTT-AGCAA-GGTAACTGGTTTTCAAGATTCCCATTTTTT  142

seq1  CAGATGGACAATTAAATCTGGC-AAAATATATTCATAAAAT-AAAATGTT  197
      ||||||||||| | |||||||| |||||||| ||||||||| ||||||||
seq2  CAGATGGACAAATTAATCTGGCAAAAATATAATCATAAAATAAAAATGTT  192

seq1  TTCTAATTAATATCTTCTGAGGAAATTG-TAATAAAAGAGAACCTTGTGC  246
      ||||||||||||||||||||| |||||| || |||||||||||| |||||
seq2  TTCTAATTAATATCTTCTGAGAAAATTGTTATTAAAAGAGAACC-TGTGC  241

seq1  TTCAAGGTCATTGTAAAGTTGCTCAATGTCAATGTAC-AAAAGGAGCTGC  295
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCAAGGTCATTGTAAAGTTGCTCAATGTCAATGTACAAAAAGGAGCTGC  291

seq1  TGACAATGAGTATGCCCTAAATCATCATATATACATATATATATGCATGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGAGTATGCCCTAAATCATCATATATACATATATATATGCATGT  341

seq1  ATACATACATATATATTATGAGATATATAAATGTGTGTGTGTGTGTGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATATATATTATGAGATATATAAATGTGTGTGTGTGTGTGTGT  391

seq1  GTGTGTGTGTATACGAAGAAAGGAAAGGAAAATTCAAAGGGAAAAATGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATACGAAGAAAGGAAAGGAAAATTCAAAGGGAAAAATGTT  441

seq1  AATATTTTCTTTAGAGATTTCAATTTTAAACTAGACAGAGTGTTTTGAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCTTTAGAGATTTCAATTTTAAACTAGACAGAGTGTTTTGAAT  491

seq1  CTTTATGCTAATGTGTAGAACTCAGATGTGTGTGTGTGTGTGTGTGTGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGCTAATGTGTAGAACTCAGATGTGTGTGTGTGTGTGTGTGTGTG  541

seq1  TGTGTGTGTGTGTGTGTGTGTTCCTTGCTTTTGTTTGGAATTTTTTGTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTTCCTTGCTTTTGTTTGGAATTTTTTGTTT  591

seq1  GTTTGGATTTGGGTGTATTTATTTATTTGTCTATTTAGCACTTTAAATGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATTTGGGTGTATTTATTTATTTGTCTATTTAGCACTTTAAATGC  641

seq1  CATTAGTCATGTATAGGGAAGATACAAGTGATGTCTAGTGTTGTCAACTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTCATGTATAGGGAAGATACAAGTGATGTCTAGTGTTGTCAACTT  691

seq1  GACAGAATCTAGAATTCCCTAGGAGCTATGCCTATGGCTATTCTTTGGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATCTAGAATTCCCTAGGAGCTATGCCTATGGCTATTCTTTGGGG  741

seq1  ACGTTATCTCTAGTGTGGTAGTTGGGGTGAGAAAGCCCATCTGAGTGGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTATCTCTAGTGTGGTAGTTGGGGTGAGAAAGCCCATCTGAGTGGAT  791

seq1  GGCACTAATCCCTGGCTAGGATTGTGGACTCTGTATGTTGCAAAGGAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAATCCCTGGCTAGGATTGTGGACTCTGTATGTTGCAAAGGAAAA  841

seq1  AGAACAGCCACAGGCTTACACTCATGTCTGTTTCTAGATTGAAGGCAATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCCACAGGCTTACACTCATGTCTGTTTCTAGATTGAAGGCAATG  891

seq1  TGACCTGGCTCTCGAAGCTCTTGCTGCCTTGATTTCTCAGTCATGATATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGCTCTCGAAGCTCTTGCTGCCTTGATTTCTCAGTCATGATATA  941

seq1  GACTGTACTGACCTTTTAAGTTGTCAGAGTATTTTTATCGTCATAGCCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTACTGACCTTTTAAGTTGTCAGAGTATTTTTATCGTCATAGCCAC  991

seq1  AGCAAAAGAAACTGAGATGAACAGGCTCAGTTACCTCTTAATATCTTTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGAAACTGAGATGAACAGGCTCAGTTACCTCTTAATATCTTTTG  1041

seq1  GTTTTGCAGTGTTAGCAATTGAATTC  1071
      ||||||||||||||||||||||||||
seq2  GTTTTGCAGTGTTAGCAATTGAATTC  1067