BAC Information

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BAC

Clone NameB6Ng01-130O04
Chromosome6 (Build37)
Map Location 50,361,981 - 50,363,136
singlet/doubletsinglet
Overlap genenone
Upstream geneStk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
Downstream geneCycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877, EG625167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130O04.bB6Ng01-130O04.g
ACCDH932084DH932085
length1,124898
definitionDH932084|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O04, 5' end.DH932085|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagggacagcagtatacagccgggctgcatttgaactagagatac
aaaagagacattcagaggaggaaaatgtggtacccatcaaggagatgaac
aagtcacgtcccagcaggtcacatcagagaacagccaccgaggggatgaa
ggcaggcaggggcagctggaactcttcccacaccaatcttctcacccctt
ccttagggagaataataatggaataggcagagactctctggcaacaggca
gacagcaggttgtaaaccctagaaaacccagcctctatttctaggcaacg
cctcctcccccagtcctcctcctccttcctagttgagctgtgtccatgag
aaataaaagacacacaggaggaaattcgttgcctccgagatgcctctcgt
gtctctgccagtggtatttatttgctttgttctatcctggcttcctgcct
ggttcagggcacagtgattgctttagcccagaaaactgcaatagctccag
cctgtcttgcccactcatggcatttctcatggctttctgctgtgatgcag
agccagctctcccaacccctcaggagatgggccaccacatccagccactg
aaccacttggtggcaaactatcttcagaagtcacccatgcctttccttca
gttcatcttctctcctttgcatttcctcagcctccagcagagactccatg
tgtgcacaactgcctctgggtgaagagatcactaatatagcctaaaataa
cacattcagttatttggcatataatacatcacaacgtgggattcttcaca
aacttaaaggtaaatgatgtataaaataaagtcttgacctagggattgtt
aggtttcaaacctgggacaaatggctgaggtgcccattagcatatgaaag
gggaccaggttctccctgctccctcagttcccactgtcaagggaccgtcc
ttgctgcatactctgtctctatcgaaacttttcatccaggggctcggctc
ccttctccagatgccctccctaattaatcacccattggtactgcttcatc
ttactctccatccaagggagaagaagctgcctcctctccagatgctctcc
taataatcacatttcatctcctct

gaattctttgtttagctctgtaccccatcttttaatgggcatatttgatt
ttctggaatccagcttataaaattgccaagctcctgtaaggcaaaacaca
gtgtcaataagacaaaaaggccaccaacagattgggaaaggatttttacc
aatcctaaaacttacaggggactaatatccattctgagcaattctaaatt
ccccagaaagacaactagaacaaccaccttcagcccccaagcccaggatc
tgggatgacaactcttgataacttcttcctgctgaatacgggagttgaga
tatctttcaaggagggcagggtagggaaaaatgggagagttgggtaggcc
ataagaaggccatgccaacaattgttctagtctctgatgtctaagttctg
attggatccatctgacaggtttaatgaggcaaggtgacctggactccatg
acattgggagttctagaaggccagtttagcaggtctcatgatgaatctca
ccaaagctgaaccatgtgcagtctacaaatctccaaaccaaatggaagaa
ccatcaaggtatttgtgtggattgtgttagtctgtggaggatgtacagag
tagttaggcaagaaatcctgacccttgtgtgagtataaaaacgacaatct
ttttatgggccaattttaagaataactgatcctaagtcttcattcatgcc
atgtgaaggatggcacaaaaatctacattttttgattgattttattgaat
ctagttcttcataagatctcaccgtatcatatctgaccatgaaactctgg
aagctgtcagagactaatcactttatctaaaaacacagacacagctggga
gtaattgcacatgccttttatcccagcacttggggggggggggaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50361981_50363136
seq2: B6Ng01-130O04.b_49_1172

seq1  GAATTCAGGGACAGCAGTATACAGCCGGGCTGCATTTGAACTAGAGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACAGCAGTATACAGCCGGGCTGCATTTGAACTAGAGATAC  50

seq1  AAAAGAGACATTCAGAGGAGGAAAATGTGGTACCCATCAAGGAGATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGACATTCAGAGGAGGAAAATGTGGTACCCATCAAGGAGATGAAC  100

seq1  AAGTCACGTCCCAGCAGGTCACATCAGAGAACAGCCACCGAGGGGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACGTCCCAGCAGGTCACATCAGAGAACAGCCACCGAGGGGATGAA  150

seq1  GGCAGGCAGGGGCAGCTGGAACTCTTCCCACACCAATCTTCTCACCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGGGGCAGCTGGAACTCTTCCCACACCAATCTTCTCACCCCTT  200

seq1  CCTTAGGGAGAATAATAATGGAATAGGCAGAGACTCTCTGGCAACAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGGAGAATAATAATGGAATAGGCAGAGACTCTCTGGCAACAGGCA  250

seq1  GACAGCAGGTTGTAAACCCTAGAAAACCCAGCCTCTATTTCTAGGCAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGTTGTAAACCCTAGAAAACCCAGCCTCTATTTCTAGGCAACG  300

seq1  CCTCCTCCCCCAGTCCTCCTCCTCCTTCCTAGTTGAGCTGTGTCCATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCCCAGTCCTCCTCCTCCTTCCTAGTTGAGCTGTGTCCATGAG  350

seq1  AAATAAAAGACACACAGGAGGAAATTCGTTGCCTCCGAGATGCCTCTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGACACACAGGAGGAAATTCGTTGCCTCCGAGATGCCTCTCGT  400

seq1  GTCTCTGCCAGTGGTATTTATTTGCTTTGTTCTATCCTGGCTTCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCCAGTGGTATTTATTTGCTTTGTTCTATCCTGGCTTCCTGCCT  450

seq1  GGTTCAGGGCACAGTGATTGCTTTAGCCCAGAAAACTGCAATAGCTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGGGCACAGTGATTGCTTTAGCCCAGAAAACTGCAATAGCTCCAG  500

seq1  CCTGTCTTGCCCACTCATGGCATTTCTCATGGCTTTCTGCTGTGATGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTGCCCACTCATGGCATTTCTCATGGCTTTCTGCTGTGATGCAG  550

seq1  AGCCAGCTCTCCCAACCCCTCAGGAGATGGGCCACCACATCCAGCCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTCTCCCAACCCCTCAGGAGATGGGCCACCACATCCAGCCACTG  600

seq1  AACCACTTGGTGGCAAACTATCTTCAGAAGTCACCCATGCCTTTCCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTGGTGGCAAACTATCTTCAGAAGTCACCCATGCCTTTCCTTCA  650

seq1  GTTCATCTTCTCTCCTTTGCATTTCCTCAGCCTCCAGCAGAGACTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTTCTCTCCTTTGCATTTCCTCAGCCTCCAGCAGAGACTCCATG  700

seq1  TGTGCACAACTGCCTCTGGGTGAAGAGATCACTAATATAGCCTAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAACTGCCTCTGGGTGAAGAGATCACTAATATAGCCTAAAATAA  750

seq1  CACATTCAGTTATTTGGCATATAATACATCACAACGTGGGATTCTTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAGTTATTTGGCATATAATACATCACAACGTGGGATTCTTCACA  800

seq1  AACTTAAAGGTAAATGATGTATAAAATAAAGTCTTGACCTAGGGATTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAGGTAAATGATGTATAAAATAAAGTCTTGACCTAGGGATTGTT  850

seq1  AGGTTTCAAACCTGGGACAAATGGCTGAGGTGCCCATTAGCATATGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCAAACCTGGGACAAATGGCTGAGGTGCCCATTAGCATATGAAAG  900

seq1  GGGACCAGGTTCTCCCTGCTCCCCTCAGTTCCCACCTGTCAAGGGACCGT  950
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  GGGACCAGGTTCTCCCTGCT-CCCTCAGTTCCCA-CTGTCAAGGGACCGT  948

seq1  CCTTGCTGGCATACTCTGTCCCCTATCGAAACTTTTCCATCCCAGGGGCT  1000
      ||||||| ||||||||||| | |||||||||||||| ||| |||||||||
seq2  CCTTGCT-GCATACTCTGT-CTCTATCGAAACTTTT-CAT-CCAGGGGCT  994

seq1  CGGCTTCCCTTCTCCCAGATGCCCTTCCCTATATAATTCACCCATTTTGG  1050
      |||| |||||||| |||||||||| |||||| || | |||||||  ||||
seq2  CGGC-TCCCTTCT-CCAGATGCCC-TCCCTA-ATTAATCACCCA--TTGG  1038

seq1  TTACCTGGCCTTTCCATCTATACTTCTCCATCCCAGGGAGAAGGGAAGCT  1100
      |   |||  |||  ||||| ||| ||||||||| ||||||||  ||||||
seq2  T--ACTG--CTT--CATCT-TAC-TCTCCATCCAAGGGAGAA--GAAGCT  1078

seq1  GGCTTCCTTCTC-CCAGATGCTCTTCCCTATATAATTCAACCATTTTCAT  1149
      |    ||| ||| |||||||||||  |||| |||| |||  || ||||||
seq2  G----CCTCCTCTCCAGATGCTCT--CCTA-ATAA-TCA--CA-TTTCAT  1117

seq1  CTCCTCT  1156
      |||||||
seq2  CTCCTCT  1124


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