BAC Information

Click to search

BAC

Clone NameB6Ng01-131B10
Chromosome6 (Build37)
Map Location 116,983,935 - 117,160,958
singlet/doubletdoublet
Overlap geneCxcl12
Upstream geneTmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
Downstream geneLOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131B10.bB6Ng01-131B10.g
ACCDH932236DH932237
length977964
definitionDH932236|Mus musculus domesticus DNA, BAC clone: B6Ng01-131B10, 5' end.DH932237|Mus musculus domesticus DNA, BAC clone: B6Ng01-131B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,983,935 - 116,984,891)(117,159,989 - 117,160,958)
sequence
gaattccctgaacagccttattgaagacaagcaggaccaaccacccatca
gtggccactctggagaagtggaagaattggaaactaccctcagggcagca
atggaaggctgcagagtgtgaaatccttaaggggaagtgatcttgtctct
taggccaccatagaagtggggttccacagactttgaaaagagaaaaggct
gtgtagcaagtaaaagtttaaagcaataatgatattattattattattat
tattgtaacaattattaatactatcatcattatcagggatcagagaacat
aaaatattatatttagtcattttacctgttttagtgagaaactttgctga
ttaaatacacttcagaaatcaattgaaaaatgactttttccttccagtct
gcaactctgccctgaggcagataaggcatgcctacttttctcatacccac
aacctgcctgcctctcaggaggcctgctctaacccaggtcacagaactct
acctgcctccaaggagggacaatctctagccagagacacctaagccagtc
aactctagagacaaccagatggccagaggcaagcacaacagaagccaaag
taatttggcaccataagaaccaagttctcccaccagagcaagccctggat
accctaacatacctgagaagcaagtttcttacctaaaaacccatctcatg
aagatgatagaggccttcaaggaggatcaaaataactcctttggagaaat
gtaggaaaacacagacaaacaggtaaaagccattaaagaggagataaata
aatcccttaaagaaatataggaaaacacaatcaaacaggtgaaggaattg
aacaaaacagtccaagacccaaaaatggaatagaaacgataaagaaatca
caaatggaggcaaccccggaaattgaaacctagggaagagataagagcta
cagatacaatatcatcacagatacaag
gaattccatggattagctttgaactggcctggagtcacttgccatgacag
gcactgggaactcacgtgagtgatgaggttgcatcggacggagatgcatt
tctggaaggaggaaagagaagcaggctgtttgtcttccagtctgcactac
tcagcctgacgtgggagccagggccactcttgttgaaaggaggacaggct
tgggaaaactggttctttacatcctgacttcaggggattctaattccatc
catgctgtcataagcgagctatgtcagaaacagatgggcctgtttgtatt
tcactacactgtcagcatttgattaacatttcactactgcatgcgttgtt
tcactgggtgctcaaggccactcacacacaagtgtccttttattccagcc
ttaattagtattaactctcaggccacacttttataatacacacacacaca
cacacacacacacacacacacacacacgccatagggtaaggaagggttaa
gggggttgcagagttctgagaggcactaagttgataagggccaagggaag
cctctatcgggtcccagataagaaacctcataaacctgtaggcacagggc
agcttgtgacacagacagatgctggtccccacggcgggctgttttaaagt
gtcagtttcaaagtgggctgtgtgtcacagacaggagaaacctcactaga
gccagaggtccagagcagacagatagctttcactttggtaattttcctct
atgaggcttgtgactagtgacagagtgacaggtcagccgacttgtcacgt
ctcagtctggtgctctttctcacatggtcccaggtgagggtgttcccatc
tgaagtaactgatagactaggtgtctggtgttctatatcgcttgatacat
ttcacgatgtgctcattttgtagcctgaggattcttgacttattgtgtct
cctggattcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116983935_116984891
seq2: B6Ng01-131B10.b_47_1000

seq1  GAATTCCCTGAACAGCCTTATTGAAGACAAGCAGGACCAACCACCCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAACAGCCTTATTGAAGACAAGCAGGACCAACCACCCATCA  50

seq1  GTGGCCACTCTGGAGAAGTGGAAGAATTGGAAACTACCCTCAGGGCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCACTCTGGAGAAGTGGAAGAATTGGAAACTACCCTCAGGGCAGCA  100

seq1  ATGGAAGGCTGCAGAGTGTGAAATCCTTAAGGGGAAGTGATCTTGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGCTGCAGAGTGTGAAATCCTTAAGGGGAAGTGATCTTGTCTCT  150

seq1  TAGGCCACCATAGAAGTGGGGTTCCACAGACTTTGAAAAGAGAAAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCACCATAGAAGTGGGGTTCCACAGACTTTGAAAAGAGAAAAGGCT  200

seq1  GTGTAGCAAGTAAAAGTTTAAAGCAATAATGATATTATTATTATTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCAAGTAAAAGTTTAAAGCAATAATGATATTATTATTATTATTAT  250

seq1  TATTGTAACAATTATTAATACTATCATCATTATCAGGGATCAGAGAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAACAATTATTAATACTATCATCATTATCAGGGATCAGAGAACAT  300

seq1  AAAATATTATATTTAGTCATTTTACCTGTTTTAGTGAGAAACTTTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATATTTAGTCATTTTACCTGTTTTAGTGAGAAACTTTGCTGA  350

seq1  TTAAATACACTTCAGAAATCAATTGAAAAATGACTTTTTCCTTCCAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACACTTCAGAAATCAATTGAAAAATGACTTTTTCCTTCCAGTCT  400

seq1  GCAACTCTGCCCTGAGGCAGATAAGGCATGCCTACTTTTCTCATACCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTGCCCTGAGGCAGATAAGGCATGCCTACTTTTCTCATACCCAC  450

seq1  AACCTGCCTGCCTCTCAGGAGGCCTGCTCTAACCCAGGTCACAGAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCTGCCTCTCAGGAGGCCTGCTCTAACCCAGGTCACAGAACTCT  500

seq1  ACCTGCCTCCAAGGAGGGACAATCTCTAGCCAGAGACACCTAAGCCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCCAAGGAGGGACAATCTCTAGCCAGAGACACCTAAGCCAGTC  550

seq1  AACTCTAGAGACAACCAGATGGCCAGAGGCAAGCACAACAGAAGCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGAGACAACCAGATGGCCAGAGGCAAGCACAACAGAAGCCAAAG  600

seq1  TAATTTGGCACCATAAGAACCAAGTTCTCCCACCAGAGCAAGCCCTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGCACCATAAGAACCAAGTTCTCCCACCAGAGCAAGCCCTGGAT  650

seq1  ACCCTAACATACCTGAGAAGCAAGTTTCTTACCTAAAAACCCATCTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAACATACCTGAGAAGCAAGTTTCTTACCTAAAAACCCATCTCATG  700

seq1  AAGATGATAGAGGCCTTCAAGGAGGATCAAAATAACTCCTTTGGAGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATAGAGGCCTTCAAGGAGGATCAAAATAACTCCTTTGGAGAAAT  750

seq1  GTAGGAAAACACAGACAAACAGGTAAAAGCCATTAAAGAGGAGATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAAACACAGACAAACAGGTAAAAGCCATTAAAGAGGAGATAAATA  800

seq1  AATCCCTTAAAGAAATATAGGAAAACACAATCAAACAGGTGAAGGAATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTTAAAGAAATATAGGAAAACACAATCAAACAGGTGAAGGAATTG  850

seq1  AACAAAACAGTCCAAGACCCAAAAATGGAAATAGAAACGATAAAGAAATC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AACAAAACAGTCCAAGACCCAAAAATGG-AATAGAAACGATAAAGAAATC  899

seq1  ACAAATGGAGGCAACCCCGGAAATTGAAAACCTAGGGAAGAGATAAGGAG  950
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  ACAAATGGAGGCAACCCCGGAAATTG-AAACCTAGGGAAGAGATAA-GAG  947

seq1  CTACAGA  957
      |||||||
seq2  CTACAGA  954

seq1: chr6_117159989_117160958
seq2: B6Ng01-131B10.g_69_1032 (reverse)

seq1  TTTTAGAATGCCAGAAGACACAAATAAGTCAAGAATACATCTGTGCTAAC  50
      |||| |||| |||| |||||| |||||||||||||| | || | ||||  
seq2  TTTTTGAAT-CCAGGAGACAC-AATAAGTCAAGAAT-CCTCAG-GCTACA  46

seq1  AAATGAGCACATCTGTG-AATGTATCAAGCGATATTAGAAACACCAGACA  99
      ||||||||||||| ||| |||||||||||||||| ||| |||||||||||
seq2  AAATGAGCACATC-GTGAAATGTATCAAGCGATA-TAG-AACACCAGACA  93

seq1  CACTAGTCTATCAGTTACTTCAGATGGGAACACCCTCACCTGGGACCATG  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-CTAGTCTATCAGTTACTTCAGATGGGAACACCCTCACCTGGGACCATG  142

seq1  TGAGAAAGAGCACCAGACTGAGACGTGACAAGTCGGCTGACCTGTCACTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGAGCACCAGACTGAGACGTGACAAGTCGGCTGACCTGTCACTC  192

seq1  TGTCACTAGTCACAAGCCTCATAGAGGAAAATTACCAAAGTGAAAGCTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAGTCACAAGCCTCATAGAGGAAAATTACCAAAGTGAAAGCTAT  242

seq1  CTGTCTGCTCTGGACCTCTGGCTCTAGTGAGGTTTCTCCTGTCTGTGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCTCTGGACCTCTGGCTCTAGTGAGGTTTCTCCTGTCTGTGACA  292

seq1  CACAGCCCAC-TTGAAACTGACACTTTAAAACAGCCCGCCGTGGGGACCA  348
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCACTTTGAAACTGACACTTTAAAACAGCCCGCCGTGGGGACCA  342

seq1  GCATCTGTCTGTGTCACAAGCTGCCCTGTGCCTACAGGTTTATGAGGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTCTGTGTCACAAGCTGCCCTGTGCCTACAGGTTTATGAGGTTT  392

seq1  CTTATCTGGGACCCGATAGAGGCTTCCCTTGGCCCTTATCAACTTAGTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGGGACCCGATAGAGGCTTCCCTTGGCCCTTATCAACTTAGTGC  442

seq1  CTCTCAGAACTCTGCAACCCCCTTAACCCTTCCTTACCCTATGGCGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAACTCTGCAACCCCCTTAACCCTTCCTTACCCTATGGCGTGTG  492

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTATAAAAGTGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTATAAAAGTGTGG  542

seq1  CCTGAGAGTTAATACTAATTAAGGCTGGAATAAAAGGACACTTGTGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGTTAATACTAATTAAGGCTGGAATAAAAGGACACTTGTGTGTG  592

seq1  AGTGGCCTTGAGCACCCAGTGAAACAACGCATGCAGTAGTGAAATGTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCTTGAGCACCCAGTGAAACAACGCATGCAGTAGTGAAATGTTAA  642

seq1  TCAAATGCTGACAGTGTAGTGAAATACAAACAGGCCCATCTGTTTCTGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTGACAGTGTAGTGAAATACAAACAGGCCCATCTGTTTCTGAC  692

seq1  ATAGCTCGCTTATGACAGCATGGATGGAATTAGAATCCCCTGAAGTCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCGCTTATGACAGCATGGATGGAATTAGAATCCCCTGAAGTCAGG  742

seq1  ATGTAAAGAACCAGTTTTCCCAAGCCTGTCCTCCTTTCAACAAGAGTGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGAACCAGTTTTCCCAAGCCTGTCCTCCTTTCAACAAGAGTGGC  792

seq1  CCTGGCTCCCACGTCAGGCTGAGTAGTGCAGACTGGAAGACAAACAGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCCCACGTCAGGCTGAGTAGTGCAGACTGGAAGACAAACAGCCT  842

seq1  GCTTCTCTTTCCTCCTTCCAGAAATGCATCTCCGTCCGATGCAACCTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTTTCCTCCTTCCAGAAATGCATCTCCGTCCGATGCAACCTCAT  892

seq1  CACTCACGTGAGTTCCCAGTGCCTGTCATGGCAAGTGACTCCAGGCCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGTGAGTTCCCAGTGCCTGTCATGGCAAGTGACTCCAGGCCAGT  942

seq1  TCAAAGCTAATCCATGGAATTC  970
      ||||||||||||||||||||||
seq2  TCAAAGCTAATCCATGGAATTC  964