BAC Information

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BAC

Clone NameB6Ng01-132P15
Chromosome6 (Build37)7 (Build37)
Map Location 146,656,386 - 146,656,910134,648,546 - 134,649,588
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRassf8, Bhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175
Downstream geneStk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132P15.bB6Ng01-132P15.g
ACCDH933647DH933648
length9521,024
definitionDH933647|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P15, 5' end.DH933648|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,656,386 - 146,656,910)(134,648,546 - 134,649,588)
sequence
gaattcttcatctgcttcagaactactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tcttttttcttttccttccttctaatctctccccaggtattcttacctga
cctaaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagattgccctgaatttcctctagaattttcagccctatcttaat
cacctgataacatgtgaaaaggaacaaaagggctcctaacattagaaaaa
attcaaggccaaacattttccactttacttctgatagactgtcttgaatt
tccttagaaagttcaaggccaggcttacctcgtaaagctatacttacggg
tactctcgttccccagctgaaaagttctgaattcatacagttgaatcctt
cttaacagtctgctttacgggaacctttattaccgcgacccgcagttctg
gttctggaatgagggatcttccctgcgccagtcccgagttttttctcgtc
ccggaattcggcaccaattcttattagacgcgttctcacgcccggccagg
aaagacgcaacagaccagaatcttctgcggcaaaactttattgcttacat
ctttgggagccaggagggcaagcgcccagcgcccagccccaaaaacgaaa
agccccttcaataattttaggagccagagctctggcgcgccggggcgcag
agcgtgctctattgtttacatctttaggcagcgagagagcgcagggcgcg
cagagccagagagatgccagcgagagagaaatggcggaaaccccgtcccc
tttttaggagcgttatatttcgcctaggacgcatcactccctgattggct
gc
gaattctttttggggtgtgtgtgtgagagagaattcttaatactattaat
ctgtctctaatactgatttttttttttacattatttaaaaatagagaggg
gctgcctggcagtggtagcacacaccattaatctcagcatttgggaagta
gaggcagatctctgcgtttgaggctagcctggtctacagaatgagtttca
aggcagaaattctgccaggtactcactccccccaccccaccccccaaaaa
aaaaccagagtacttgctcttacagaggatcagagttcagttcccagcaa
gtgtcatatatggtgactgacaacttataactccagttccaagggatctg
acaatcacatgcaagtacacacacaactatgagcacacactcaaatctta
ggggaaaaaatctatatggagttgaacatggtgatgcatgcctgtaacct
caatatttactgttgttgcagtgaagagtaggaggattactgtaagcttg
aggaaaattctagctaccctacagaaatcttttcaaaagactagggttgg
cagtaggtatggtgccatacacccatctctatactcacaggtaaggtaag
gatggtgaattctcagaagccccagtctacagagcaacagtcaatgtcaa
aaagaaagctgtacagaatattatgtttaattttgggtatagcagtatag
cttaatggtacagtacaacctttgattttttttccctagcaccaacacac
acacacacacacacacacacacacacacgtttatttttttttaatgctac
aaattagccgggcatggtggcgcatgcctttaatcccaacactcgggagg
cagaggcaggcgaatttctgagtttgaggccagcctggtctacaaagtga
tttccaggacagccaggctacacagagaaaccctgtctcgaaaacaaaaa
acaaaagcaattaacaaaaccaaaaagctactattgggcagtggtgcaac
acctttatccggcacttgaatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146656386_146656910
seq2: B6Ng01-132P15.b_56_532 (reverse)

seq1  AATTCAGAACTTTTCAGCTGGGGGAACAGAGTACCAGTGAGTACAGCTTT  50
      ||||||||||||||||||||||| |  |||||||| || |||| ||||||
seq2  AATTCAGAACTTTTCAGCTGGGGAACGAGAGTACCCGTAAGTATAGCTTT  50

seq1  ACGAGGTAAGTCTGGTCTTAAACTTTCTAACGAAATTCAAGACAGTCTAT  100
      |||||||||                                         
seq2  ACGAGGTAA-----------------------------------------  59

seq1  CAGAAGTAAAGTGGAAAATAGCTTTACAAGGTACGCCTGGCCTTGAACTT  150
                                        ||||||||||||||||
seq2  ----------------------------------GCCTGGCCTTGAACTT  75

seq1  TCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATGGCTTT  200
      ||||| ||||||||||||||||||||||||||||||||||||        
seq2  TCTAAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAA--------  117

seq1  GCAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGAAGCCCTTTTGT  250
             ||||||||||||||| ||| |||| |||||| |||||||||||
seq2  -------ATGTTTGGCCTTGAATTTTTTCTAATGTTAGGAGCCCTTTTGT  160

seq1  TCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCGG---ATTCTGGAT  297
      ||||||||||||||||||| ||| |||||  ||||| |   ||||| || 
seq2  TCCTTTTCACATGTTATCAGGTGATTAAGATAGGGCTGAAAATTCTAGAG  210

seq1  GAAGTTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGC  347
      ||| |||||| ||||||||||||||||||||||||||||||| |||||||
seq2  GAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGC  260

seq1  AAAGAGAAAATATGGTTCACAAAATAAGTATACAGGCCTTTCCAAGGGTC  397
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAATATGGTACACAAAATAAGTATACAGGCCTTTCCAAGGGTC  310

seq1  TTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATT  360

seq1  AGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATTAGAGG----  493
      ||||||||||| ||| ||||||||||||||||||||| ||||| ||    
seq2  AGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCGATTAGCGGAGGT  410

seq1  -----------------------------------AGCCAGTTCTTAGTA  508
                                         |||||| ||||||||
seq2  CTCTAGGAGATACTCGTCACTAGATGAGCTCAGGAAGCCAGCTCTTAGTA  460

seq1  GTTCTGAATCAGATGAA  525
      |||||||| ||||||||
seq2  GTTCTGAAGCAGATGAA  477

seq1: chr7_134648546_134649588
seq2: B6Ng01-132P15.g_67_1090

seq1  GAATTCTTTTTGGGGTGTGTGTGTGAGAGAGAATTCTTAATACTATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGGGGTGTGTGTGTGAGAGAGAATTCTTAATACTATTAAT  50

seq1  CTGTCTCTAATACTGATTTTTTTTTTTACATTATTTAAAAATAGAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTAATACTGATTTTTTTTTTTACATTATTTAAAAATAGAGAGGG  100

seq1  GCTGCCTGGCAGTGGTAGCACACACCATTAATCTCAGCATTTGGGAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGGCAGTGGTAGCACACACCATTAATCTCAGCATTTGGGAAGTA  150

seq1  GAGGCAGATCTCTGCGTTTGAGGCTAGCCTGGTCTACAGAATGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATCTCTGCGTTTGAGGCTAGCCTGGTCTACAGAATGAGTTTCA  200

seq1  AGGCAGAAATTCTGCCAGGTACTCACTCCCCCCACCCCACCCCCCAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAATTCTGCCAGGTACTCACTCCCCCCACCCCACCCCCCAAAAA  250

seq1  AAAACCAGAGTACTTGCTCTTACAGAGGATCAGAGTTCAGTTCCCAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGAGTACTTGCTCTTACAGAGGATCAGAGTTCAGTTCCCAGCAA  300

seq1  GTGTCATATATGGTGACTGACAACTTATAACTCCAGTTCCAAGGGATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATATATGGTGACTGACAACTTATAACTCCAGTTCCAAGGGATCTG  350

seq1  ACAATCACATGCAAGTACACACACAACTATGAGCACACACTCAAATCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACATGCAAGTACACACACAACTATGAGCACACACTCAAATCTTA  400

seq1  GGGGAAAAAATCTATATGGAGTTGAACATGGTGATGCATGCCTGTAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAAATCTATATGGAGTTGAACATGGTGATGCATGCCTGTAACCT  450

seq1  CAATATTTACTGTTGTTGCAGTGAAGAGTAGGAGGATTACTGTAAGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTACTGTTGTTGCAGTGAAGAGTAGGAGGATTACTGTAAGCTTG  500

seq1  AGGAAAATTCTAGCTACCCTACAGAAATCTTTTCAAAAGACTAGGGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTCTAGCTACCCTACAGAAATCTTTTCAAAAGACTAGGGTTGG  550

seq1  CAGTAGGTATGGTGCCATACACCCATCTCTATACTCACAGGTAAGGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTATGGTGCCATACACCCATCTCTATACTCACAGGTAAGGTAAG  600

seq1  GATGGTGAATTCTCAGAAGCCCCAGTCTACAGAGCAACAGTCAATGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGAATTCTCAGAAGCCCCAGTCTACAGAGCAACAGTCAATGTCAA  650

seq1  AAAGAAAGCTGTACAGAATATTATGTTTAATTTTGGGTATAGCAGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCTGTACAGAATATTATGTTTAATTTTGGGTATAGCAGTATAG  700

seq1  CTTAATGGTACAGTACAACCTTTGATTTTTTTTCCCTAGCACCAACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGGTACAGTACAACCTTTGATTTTTTTTCCCTAGCACCAACACAC  750

seq1  ACACACACACACACACACACACACACACGTTTATTTTTTTTTAATGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACGTTTATTTTTTTTTAATGCTAC  800

seq1  AAATTAGCCGGGCATGGTGGCGCATGCCTTTAATCCCAACACTCGGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCCGGGCATGGTGGCGCATGCCTTTAATCCCAACACTCGGGAGG  850

seq1  CAGAGGCAGGCGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGA  900

seq1  GTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAA  950
       |||||||||||||| |||||||||||||||||||||||||  |||||||
seq2  TTTCCAGGACAGCCA-GGCTACACAGAGAAACCCTGTCTCG--AAAACAA  947

seq1  AAAAACAAAAAAGCAAAATAAAACAAAAAACCAAAAAAAGCTACAAATTG  1000
      |||   | ||||||  ||| |   | ||||||  ||||||||||  ||||
seq2  AAA---ACAAAAGC--AATTA---ACAAAACC--AAAAAGCTAC-TATTG  986

seq1  GGCAGTGGTGGCACACACCTTTAATCCGGGCACTTGAGATGTA  1043
      ||||||||| ||| |||||||| |||| ||||||||| |||||
seq2  GGCAGTGGT-GCA-ACACCTTT-ATCC-GGCACTTGA-ATGTA  1024