BAC Information

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BAC

Clone NameB6Ng01-133A01
Chromosome6 (Build37)
Map Location 113,326,822 - 113,485,312
singlet/doubletdoublet
Overlap geneTada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2
Upstream geneD630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1
Downstream gene4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133A01.bB6Ng01-133A01.g
ACCDH933667DH933668
length1,089831
definitionDH933667|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A01, 5' end.DH933668|Mus musculus domesticus DNA, BAC clone: B6Ng01-133A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,484,212 - 113,485,312)(113,326,822 - 113,327,651)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacc
aaaaaaaaacaaaacaaaacaaaaaaaacaaaaaaaaaaaaccaaaaacg
tgtattctttactgagctatctctgtgtttctaaaacatgtgtagacacg
tacgctacagcagagaatgaggtcggagggcagctgtggaggatgttcgt
tctttcctacctgaactcaggctgccaagcctgcccagcaagttaccagg
ttagcaactgcaacagcctcaccttgatttctgaaacaaagtctctcact
ggggctcacagagtacactaggctgactgaccagcaagccagagaagtcc
tgctgactccacctcctcaccactggaactcatattcaccatttttgcag
tggtcctggggatgacactcaagtcttcacacgtccctggctgagccatc
ccgcagcccccttttcagaactcttaggacctttgttaactgagttctca
ctatttctttgcttgtggcttacttttctttctatatcactaccatttat
ttacccgttacttttttaggaataaaaggagacaagttactatttttttc
tcttctgttttttgtttttgaaacaaggtctctccttgtagttctgacta
tcctggacctcactatatagaccaggctgacatcaaacccacagcaatcc
cctccttctgctgggattaaaggtgtgtctcaccacacccagaccacttg
ttgttcaaaaggatgaatatttcttatttttgtgttctaggatctagata
atattgataatgtataagaatttttacaaagatttatttctggtctagag
agatggctcaccggttaagagtactgactgctcttccagaggtcctgagt
tcaatccccagcaactacatggtggctcacaaccatctgtaatgggatcc
aatgccctcttctggttgtgtctgagacagctaagtgtactcatattaat
aaaatagtaaatctttaaaaaaagatttatttctattctgtatgatagct
gttgctgccggaacctaatgtaccacatgatgtacgtgt
gaattccacggccttgaacttatgatccacctgctttagcctcccaagtc
actaggtgtacaaacctgcatgattaggccggcctcctagttgcaatttg
aaccgcagaagtctggaatctgcagcattaaggaagaggagatactagtg
tgccctgtcttcctatgtcctctgtttccctacgttgggtcgtttctagc
attctatttgacagggttctccctgcctcctcttgtctcactccattcca
cctctgcaccttctctgtgtccctggctagtttggaacacaggctggtca
ggtgaacagaactaagttccagcccattttcttatgtgcgtttctaaaca
tgttatttaacctgaatctccggtttttgtttgtttgtttgtttgttttt
cttttttccaggacaaaagatgatgcctcagtctatttccccattaagaa
gtataaatctgtaaaatgggggcatcgagaattacctacctccctggaat
gttctgaggattaagaggtgatgctcgtcaagtgcccagttcagtgcctg
gcacagaagtgggactgcttaatggctggctccacctgtgtgtcgcccca
agatcccgcctccagggtcctcgtcctctagggagcccctaacacaaccc
ccgcctctcctacctcctctctgcggcctcctacaggccctgggccgcag
gagggggcggggagttcagggcgatcggagcaactgctccggaactggct
atgggcgggccccctgcagttgacgcgagggcggggacggccagcccaag
gtggcctgtagggccggggtgggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113484212_113485312
seq2: B6Ng01-133A01.b_51_1139 (reverse)

seq1  ACACGGTACATTCATGTGGTACATTTAGGTTCCGGCAGGCAAACAGCTAT  50
      |||| ||||| |||||||||||| ||||||||||||||   |||||||||
seq2  ACAC-GTACA-TCATGTGGTACA-TTAGGTTCCGGCAG--CAACAGCTAT  45

seq1  CCATACAGAATAGAAATAAATCTTTTTTTTTAAAGATTTACTTATTTTAT  100
       |||||||||||||||||||||  ||||||||||||||||| ||||||||
seq2  -CATACAGAATAGAAATAAATC--TTTTTTTAAAGATTTAC-TATTTTAT  91

seq1  TTATATGAGTACACTTTAGCTGTCTTCAGACACAAACCAGAAGAGGGCAT  150
      | |||||||||||| ||||||||| |||||||| ||||||||||||||||
seq2  TAATATGAGTACAC-TTAGCTGTC-TCAGACAC-AACCAGAAGAGGGCAT  138

seq1  TGGATCCCATTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCATTACAGATGGTTGTGAGCCACCATGTAGTTGCTGGGGATTG  188

seq1  AACTCAGGACCTCTGGAAGAGCAGTCAGTACTCTTAACCGGTGAGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGACCTCTGGAAGAGCAGTCAGTACTCTTAACCGGTGAGCCATC  238

seq1  TCTCTAGACCAGAAATAAATCTTTGTAAAAATTCTTATACATTATCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGACCAGAAATAAATCTTTGTAAAAATTCTTATACATTATCAATA  288

seq1  TTATCTAGATCCTAGAACACAAAAATAAGAAATATTCATCCTTTTGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAGATCCTAGAACACAAAAATAAGAAATATTCATCCTTTTGAACA  338

seq1  ACAAGTGGTCTGGGTGTGGTGAGACACACCTTTAATCCCAGCAGAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGGTCTGGGTGTGGTGAGACACACCTTTAATCCCAGCAGAAGGAG  388

seq1  GGGATTGCTGTGGGTTTGATGTCAGCCTGGTCTATATAGTGAGGTCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCTGTGGGTTTGATGTCAGCCTGGTCTATATAGTGAGGTCCAGG  438

seq1  ATAGTCAGAACTACAAGGAGAGACCTTGTTTCAAAAACAAAAAACAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGAACTACAAGGAGAGACCTTGTTTCAAAAACAAAAAACAGAAG  488

seq1  AGAAAAAAATAGTAACTTGTCTCCTTTTATTCCTAAAAAAGTAACGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATAGTAACTTGTCTCCTTTTATTCCTAAAAAAGTAACGGGTA  538

seq1  AATAAATGGTAGTGATATAGAAAGAAAAGTAAGCCACAAGCAAAGAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGTAGTGATATAGAAAGAAAAGTAAGCCACAAGCAAAGAAATA  588

seq1  GTGAGAACTCAGTTAACAAAGGTCCTAAGAGTTCTGAAAAGGGGGCTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACTCAGTTAACAAAGGTCCTAAGAGTTCTGAAAAGGGGGCTGCG  638

seq1  GGATGGCTCAGCCAGGGACGTGTGAAGACTTGAGTGTCATCCCCAGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCTCAGCCAGGGACGTGTGAAGACTTGAGTGTCATCCCCAGGACC  688

seq1  ACTGCAAAAATGGTGAATATGAGTTCCAGTGGTGAGGAGGTGGAGTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAAAATGGTGAATATGAGTTCCAGTGGTGAGGAGGTGGAGTCAGC  738

seq1  AGGACTTCTCTGGCTTGCTGGTCAGTCAGCCTAGTGTACTCTGTGAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCTCTGGCTTGCTGGTCAGTCAGCCTAGTGTACTCTGTGAGCCC  788

seq1  CAGTGAGAGACTTTGTTTCAGAAATCAAGGTGAGGCTGTTGCAGTTGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGACTTTGTTTCAGAAATCAAGGTGAGGCTGTTGCAGTTGCTA  838

seq1  ACCTGGTAACTTGCTGGGCAGGCTTGGCAGCCTGAGTTCAGGTAGGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTAACTTGCTGGGCAGGCTTGGCAGCCTGAGTTCAGGTAGGAAAG  888

seq1  AACGAACATCCTCCACAGCTGCCCTCCGACCTCATTCTCTGCTGTAGCGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACATCCTCCACAGCTGCCCTCCGACCTCATTCTCTGCTGTAGCGT  938

seq1  ACGTGTCTACACATGTTTTAGAAACACAGAGATAGCTCAGTAAAGAATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCTACACATGTTTTAGAAACACAGAGATAGCTCAGTAAAGAATAC  988

seq1  ACGTTTTTGGTTTTTTTTTTTTGTTTTTTTTGTTTTGTTTTGTTTTTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTTGGTTTTTTTTTTTTGTTTTTTTTGTTTTGTTTTGTTTTTTTT  1038

seq1  TGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATT  1088

seq1  C  1101
      |
seq2  C  1089

seq1: chr6_113326822_113327651
seq2: B6Ng01-133A01.g_67_897

seq1  GAATTCCA-GGCCTTGAACTTATGATCCACCTGCTTTAGCCTCCCAAGTC  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGCCTTGAACTTATGATCCACCTGCTTTAGCCTCCCAAGTC  50

seq1  ACTAGGTGTACAAACCTGCATGATTAGGCCGGCCTCCTAGTTGCAATTTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTGTACAAACCTGCATGATTAGGCCGGCCTCCTAGTTGCAATTTG  100

seq1  AACCGCAGAAGTCTGGAATCTGCAGCATTAAGGAAGAGGAGATACTAGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCAGAAGTCTGGAATCTGCAGCATTAAGGAAGAGGAGATACTAGTG  150

seq1  TGCCCTGTCTTCCTATGTCCTCTGTTTCCCTACGTTGGGTCGTTTCTAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTCTTCCTATGTCCTCTGTTTCCCTACGTTGGGTCGTTTCTAGC  200

seq1  ATTCTATTTGACAGGGTTCTCCCTGCCTCCTCTTGTCTCACTCCATTCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTGACAGGGTTCTCCCTGCCTCCTCTTGTCTCACTCCATTCCA  250

seq1  CCTCTGCACCTTCTCTGTGTCCCTGGCTAGTTTGGAACACAGGCTGGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCACCTTCTCTGTGTCCCTGGCTAGTTTGGAACACAGGCTGGTCA  300

seq1  GGTGAACAGAACTAAGTTCCAGCCCATTTTCTTATGTGCGTTTCTAAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACAGAACTAAGTTCCAGCCCATTTTCTTATGTGCGTTTCTAAACA  350

seq1  TGTTATTTAACCTGAATCTCCGGTTTTTGTTTGTTTGTTTGTTTGTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTAACCTGAATCTCCGGTTTTTGTTTGTTTGTTTGTTTGTTTTT  400

seq1  CTTTTTTCCAGGACAAAAGATGATGCCTCAGTCTATTTCCCCATTAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCAGGACAAAAGATGATGCCTCAGTCTATTTCCCCATTAAGAA  450

seq1  GTATAAATCTGTAAAATGGGGGCATCGAGAATTACCTACCTCCCTGGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATCTGTAAAATGGGGGCATCGAGAATTACCTACCTCCCTGGAAT  500

seq1  GTTCTGAGGATTAAGAGGTGATGCTCGTCAAGTGCCCAGTTCAGTGCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGGATTAAGAGGTGATGCTCGTCAAGTGCCCAGTTCAGTGCCTG  550

seq1  GCACAGAAGTGGGACTGCTTAATGGCTGGCTCCACCTGTGTGTCGCCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAGTGGGACTGCTTAATGGCTGGCTCCACCTGTGTGTCGCCCCA  600

seq1  AGATCCCGCCTCCAGGGTCCTCGTCCTCTAGGGAGCCCCTAACACAACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCGCCTCCAGGGTCCTCGTCCTCTAGGGAGCCCCTAACACAACCC  650

seq1  CCGCCTCTCCTACCTCCTCTCTGCGGCCTCCTACAGGCCCTGGGCCGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCTCCTACCTCCTCTCTGCGGCCTCCTACAGGCCCTGGGCCGCAG  700

seq1  GAGGGGGCGGGGAGTTCAGGGCGATCGGAGCAACTGCTCCGGAACTGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGCGGGGAGTTCAGGGCGATCGGAGCAACTGCTCCGGAACTGGCT  750

seq1  ATGGGCGGGCCCCCTGCAGTTGACGCGAGGGCGGGGACGGCCAGCCCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCGGGCCCCCTGCAGTTGACGCGAGGGCGGGGACGGCCAGCCCAAG  800

seq1  GTGGCCTGTAGGGCCGGGGTGGGGGTGGGGG  830
      |||||||||||||||||||||||||||||||
seq2  GTGGCCTGTAGGGCCGGGGTGGGGGTGGGGG  831