BAC Information

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BAC

Clone NameB6Ng01-133H15
Chromosome2 (Build37)6 (Build37)
Map Location 91,241,132 - 91,241,406144,729,398 - 144,729,685
singlet/doubletsingletsinglet
Overlap gene1110051M20Rik
Upstream geneGA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289
Downstream geneLrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133H15.bB6Ng01-133H15.g
ACCDH934013DH934014
length326288
definitionDH934013|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H15, 5' end.DH934014|Mus musculus domesticus DNA, BAC clone: B6Ng01-133H15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,241,132 - 91,241,406)(144,729,398 - 144,729,685)
sequence
gaattccttttttttttttttaaagatttatttatttactttatgtctat
gtgcacacactgtacagattgtgagccttcatctggctgttgggaattga
cttttagggcctctgcttgctctagtcaaccccgctcaccctgtcccaaa
gatttattttttgttatagataagtacactgtagctgtcttcagacagca
ccagaagaggtgggtcagatctcattacagatggttgtgagccaccatgt
ggttgctgggatttgaactcaaagaccttcggaagagcagtcagtgctct
tacccactgagccatctcaccagccc
acattcctcagtcttaggcactgaaaccaaacagtttattaatatattca
ctttgcaagatgactattaaaatatgagaactatgtcctgtggatctgag
gccagtcgattgataactccaaaaactgctgttttcaaatgcacacattt
cctaatccaacttgctttccacccgtgtgacctctgtcccctacttcttg
ctacctaccatagctatgaagagcaagcagagagggacacagcacttgag
tagtttatactttgcccagagtgaggggcggcgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_91241132_91241406
seq2: B6Ng01-133H15.b_101_367

seq1  CTGTACAGATGGTTGTGAGCCTTCATGTGGTCGTTGGGAATTGA-ATTTA  49
      |||||||||   |||||||||||||| |||  ||||||||||||  ||||
seq2  CTGTACAGA---TTGTGAGCCTTCATCTGGCTGTTGGGAATTGACTTTTA  47

seq1  GGACCTCTGCTTGCTCTAGTCAACCCTGCTTGCTCTGGTCGGCCCTCTCA  99
      || |||||||||||||||||||||                  ||| ||||
seq2  GGGCCTCTGCTTGCTCTAGTCAAC------------------CCCGCTCA  79

seq1  CTCGGTCTCTGCTCTCTCAAGCTCAAAGATTTATTTATTATTATAAATAA  149
      | | ||               | ||||||||||||| || ||||| ||||
seq2  CCCTGT---------------CCCAAAGATTTATTTTTTGTTATAGATAA  114

seq1  GTACACTGAAGCTGTCTTCAGACAGCACCAGAAGAGG-GCGTCAGATCTC  198
      |||||||| |||||||||||||||||||||||||||| | ||||||||||
seq2  GTACACTGTAGCTGTCTTCAGACAGCACCAGAAGAGGTGGGTCAGATCTC  164

seq1  ATT----ATGG--------------GTGGTTGCTGGGATTTG------AA  224
      |||    ||||              |||||||||||||||||      ||
seq2  ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAAA  214

seq1  GTCCT--GGAAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTCACCAG  272
      | |||  |||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCGGAAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTCACCAG  264

seq1  CCC  275
      |||
seq2  CCC  267

seq1: chr6_144729398_144729685
seq2: B6Ng01-133H15.g_72_359

seq1  ACATTCCTCAGTCTTAGGCACTGAAACCAAACAGTTTATTAATATATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTCAGTCTTAGGCACTGAAACCAAACAGTTTATTAATATATTCA  50

seq1  CTTTGCAAGATGACTATTAAAATATGAGAACTATGTCCTGTGGATCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAGATGACTATTAAAATATGAGAACTATGTCCTGTGGATCTGAG  100

seq1  GCCAGTCGATTGATAACTCCAAAAACTGCTGTTTTCAAATGCACACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCGATTGATAACTCCAAAAACTGCTGTTTTCAAATGCACACATTT  150

seq1  CCTAATCCAACTTGCTTTCCACCCGTGTGACCTCTGTCCCCTACTTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCAACTTGCTTTCCACCCGTGTGACCTCTGTCCCCTACTTCTTG  200

seq1  CTACCTACCATAGCTATGAAGAGCAAGCAGAGAGGGACACAGCACTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACCATAGCTATGAAGAGCAAGCAGAGAGGGACACAGCACTTGAG  250

seq1  TAGTTTATACTTTGCCCAGAGTGAGGGGCGGCGGGGGG  288
      ||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATACTTTGCCCAGAGTGAGGGGCGGCGGGGGG  288