BAC Information

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BAC

Clone NameB6Ng01-134A01
Chromosome6 (Build37)
Map Location 103,298,934 - 103,412,787
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn3
Downstream geneChl1, LOC666141, LOC100043345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134A01.bB6Ng01-134A01.g
ACCDH934409DH934410
length1,0821,108
definitionDH934409|Mus musculus domesticus DNA, BAC clone: B6Ng01-134A01, 5' end.DH934410|Mus musculus domesticus DNA, BAC clone: B6Ng01-134A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,411,695 - 103,412,787)(103,298,934 - 103,300,064)
sequence
gaattcagttcatatttcatcataaaattaaccacaatctggaccatctt
ccataatgaatctggagacaagagttttgaacattaaatagtcataaaaa
tcaaaggaaaaataactggaagacaccgcacagtgatgagtttgaatgta
aatataagcacactttggatacaggagaatcatagagggtagaatggtgc
tcagcaataaacaaaatcagtaaaatgggctacggttatgcagcatagca
tgaaatggagaaaacagaaaatgaataaatatatagatttgttcaacaca
gcatggaagaggtgcaggatgctataagactatatagtaaacaggcttaa
atacatatggagttatcagagtctttttaaagtatctaacaaatcaattc
gtatctgaagcctaaattgtaagactgcataagacatatgggagtcaccg
gtgctgagaaagcattttactaaacaagagttactaaggttagagataca
ttgattggaagagattttgaagattatctattgtagacaaggataatgat
acctaaattaagaaaatcttctggtatcagtaatcttattgtggataagg
ttatacaaaacagttacagtggccaagctcaaagacatcctgacttgata
gctgaaaccctgtagttagaagggtatgtgagaaggcatcagtgatgaac
gtggtgacaggactctttaaagcccttctacaaaagtgaaatggctttat
cacagcagcaatggtgctctgctcacactactttcatcccaagaacatta
tatctagcaaaggtctttttctttctacactgtgcactctacactgtgta
gaaagacaatgtcagaaaatgtagtacttgaaataaaatgtatctgggca
tgaagcaaaattagggaatacgttaagttataactggtggccctcagcta
caatattagtggagttcaagaatagagttttcagagagaaagcacatagt
gctttcaggacacagtgattacacatcaatacaaggatattggtgcatca
ctttactgtacactgcaccataaaggattctg
gaattcagagaaggggttaccagtagaacctcctatgcagtaaagagcaa
tagagacttggttctcctggatggtggtggcagcattttagagtatgaag
attggaaatgcattataaggaaagattattttatgctgacaagaatcagg
tcatcttccatgtcccttctccactcttagttttccctgggtggatttcc
cgtgcctacagggctttctttacaaagggacatatttaagggccattcac
atgtctgttcctgtctaggcatctctaaatttaccaaagcaatatatgtt
gaagtaaaataatctaatcttttacacataagaatacctgtgactatgaa
aaagaaaaagaaaaataataattggggaatgaatacttagtgcatatcca
tcagggacccataccatagacgaatagaataatttaaattatattttcat
attctaccacatacaaaattaaatgaattttatatattccatacagatat
atgtaagaggcaaaggtcctaattaattaatagactagttcatttataga
ttcattcttatggataggtgctttcattttactttttgtctgtttttgct
tgttttgagataggattatccaaattttggactttatactcattgtgtgg
ctgaaaccctaatcctcctgcctccacattcacaaatactgtgcttatgg
gtatatgacaatcatatattgtcacagattatatttttacagatttattt
atttttattttatgcgtgagagtgtttcacctgcacatgtgcgtatatac
cgtataagcacctggaggagggaagaacaggctatcagattcttttaaac
tggagttatggacagttgtgagcttctatatggaagctagaaactgaacc
caggtcctctattaggaccggggtgacatttaagtgctcttaaatggtga
accatctctcatatccatgtaaagtatatacattatcaataattcttctc
ttttatcatgttaacatccacttattgtcattttagttatttattaatat
atctaagaacactgtagcctgtcttcgatgcaacagaaaacgtgttggat
tcattatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103411695_103412787
seq2: B6Ng01-134A01.b_48_1129 (reverse)

seq1  CAGAATACTTTATGGTGCAGTGTACAGTAAAGGTGATTGGCACCAATATC  50
      |||||| |||||||||||||||||||||||| |||||  |||||||||||
seq2  CAGAATCCTTTATGGTGCAGTGTACAGTAAA-GTGAT--GCACCAATATC  47

seq1  CTTGTATTTGATGTTGTAATCACTGTGTCCTGAAAGCACTATGTGGCTTT  100
      |||||| |||||| |||||||||||||||||||||||||||||| |||||
seq2  CTTGTA-TTGATG-TGTAATCACTGTGTCCTGAAAGCACTATGT-GCTTT  94

seq1  CTCCTCCTGAAAACTCTTATTCCTTGAACTCCACTAATATTTGTAGCTGA  150
      |||   |||||||||| |||| ||||||||||||||||| ||||||||||
seq2  CTC--TCTGAAAACTC-TATT-CTTGAACTCCACTAATA-TTGTAGCTGA  139

seq1  GGGCCACCAGTTATAACTTAACGTATTCCCTAATTTTGCTTCATGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACCAGTTATAACTTAACGTATTCCCTAATTTTGCTTCATGCCCAG  189

seq1  ATACATTTTATTTCAAGTACTACATTTTCTGACATTGTCTTTCTACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTATTTCAAGTACTACATTTTCTGACATTGTCTTTCTACACAG  239

seq1  TGTAGAGTGCACAGTGTAGAAAGAAAAAGACCTTTGCTAGATATAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTGCACAGTGTAGAAAGAAAAAGACCTTTGCTAGATATAATGTT  289

seq1  CTTGGGATGAAAGTAGTGTGAGCAGAGCACCATTGCTGCTGTGATAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATGAAAGTAGTGTGAGCAGAGCACCATTGCTGCTGTGATAAAGC  339

seq1  CATTTCACTTTTGTAGAAGGGCTTTAAAGAGTCCTGTCACCACGTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACTTTTGTAGAAGGGCTTTAAAGAGTCCTGTCACCACGTTCATC  389

seq1  ACTGATGCCTTCTCACATACCCTTCTAACTACAGGGTTTCAGCTATCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCCTTCTCACATACCCTTCTAACTACAGGGTTTCAGCTATCAAG  439

seq1  TCAGGATGTCTTTGAGCTTGGCCACTGTAACTGTTTTGTATAACCTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTCTTTGAGCTTGGCCACTGTAACTGTTTTGTATAACCTTATC  489

seq1  CACAATAAGATTACTGATACCAGAAGATTTTCTTAATTTAGGTATCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAGATTACTGATACCAGAAGATTTTCTTAATTTAGGTATCATTA  539

seq1  TCCTTGTCTACAATAGATAATCTTCAAAATCTCTTCCAATCAATGTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCTACAATAGATAATCTTCAAAATCTCTTCCAATCAATGTATCT  589

seq1  CTAACCTTAGTAACTCTTGTTTAGTAAAATGCTTTCTCAGCACCGGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTAGTAACTCTTGTTTAGTAAAATGCTTTCTCAGCACCGGTGAC  639

seq1  TCCCATATGTCTTATGCAGTCTTACAATTTAGGCTTCAGATACGAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATGTCTTATGCAGTCTTACAATTTAGGCTTCAGATACGAATTGA  689

seq1  TTTGTTAGATACTTTAAAAAGACTCTGATAACTCCATATGTATTTAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGATACTTTAAAAAGACTCTGATAACTCCATATGTATTTAAGCC  739

seq1  TGTTTACTATATAGTCTTATAGCATCCTGCACCTCTTCCATGCTGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTATATAGTCTTATAGCATCCTGCACCTCTTCCATGCTGTGTTG  789

seq1  AACAAATCTATATATTTATTCATTTTCTGTTTTCTCCATTTCATGCTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCTATATATTTATTCATTTTCTGTTTTCTCCATTTCATGCTATG  839

seq1  CTGCATAACCGTAGCCCATTTTACTGATTTTGTTTATTGCTGAGCACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAACCGTAGCCCATTTTACTGATTTTGTTTATTGCTGAGCACCAT  889

seq1  TCTACCCTCTATGATTCTCCTGTATCCAAAGTGTGCTTATATTTACATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTCTATGATTCTCCTGTATCCAAAGTGTGCTTATATTTACATTC  939

seq1  AAACTCATCACTGTGCGGTGTCTTCCAGTTATTTTTCCTTTGATTTTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATCACTGTGCGGTGTCTTCCAGTTATTTTTCCTTTGATTTTTAT  989

seq1  GACTATTTAATGTTCAAAACTCTTGTCTCCAGATTCATTATGGAAGATGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTAATGTTCAAAACTCTTGTCTCCAGATTCATTATGGAAGATGG  1039

seq1  TCCAGATTGTGGTTAATTTTATGATGAAATATGAACTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTGTGGTTAATTTTATGATGAAATATGAACTGAATTC  1082

seq1: chr6_103298934_103300064
seq2: B6Ng01-134A01.g_68_1175

seq1  GAATTCAGAGAAGGGGTTACCAGTAGAACCTCCTATGCAGTAAAGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAGGGGTTACCAGTAGAACCTCCTATGCAGTAAAGAGCAA  50

seq1  TAGAGACTTGGTTCTCCTGGATGGTGGTGGCAGCATTTTAGAGTATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTTGGTTCTCCTGGATGGTGGTGGCAGCATTTTAGAGTATGAAG  100

seq1  ATTGGAAATGCATTATAAGGAAAGATTATTTTATGCTGACAAGAATCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAATGCATTATAAGGAAAGATTATTTTATGCTGACAAGAATCAGG  150

seq1  TCATCTTCCATGTCCCTTCTCCACTCTTAGTTTTCCCTGGGTGGATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCCATGTCCCTTCTCCACTCTTAGTTTTCCCTGGGTGGATTTCC  200

seq1  CGTGCCTACAGGGCTTTCTTTACAAAGGGACATATTTAAGGGCCATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTACAGGGCTTTCTTTACAAAGGGACATATTTAAGGGCCATTCAC  250

seq1  ATGTCTGTTCCTGTCTAGGCATCTCTAAATTTACCAAAGCAATATATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTCCTGTCTAGGCATCTCTAAATTTACCAAAGCAATATATGTT  300

seq1  GAAGTAAAATAATCTAATCTTTTACACATAAGAATACCTGTGACTATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAATAATCTAATCTTTTACACATAAGAATACCTGTGACTATGAA  350

seq1  AAAGAAAAAGAAAAATAATAATTGGGGAATGAATACTTAGTGCATATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAAAAATAATAATTGGGGAATGAATACTTAGTGCATATCCA  400

seq1  TCAGGGACCCATACCATAGACGAATAGAATAATTTAAATTATATTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACCCATACCATAGACGAATAGAATAATTTAAATTATATTTTCAT  450

seq1  ATTCTACCACATACAAAATTAAATGAATTTTATATATTCCATACAGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCACATACAAAATTAAATGAATTTTATATATTCCATACAGATAT  500

seq1  ATGTAAGAGGCAAAGGTCCTAATTAATTAATAGACTAGTTCATTTATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAGGCAAAGGTCCTAATTAATTAATAGACTAGTTCATTTATAGA  550

seq1  TTCATTCTTATGGATAGGTGCTTTCATTTTACTTTTTGTCTGTTTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTATGGATAGGTGCTTTCATTTTACTTTTTGTCTGTTTTTGCT  600

seq1  TGTTTTGAGATAGGATTATCCAAATTTTGGACTTTATACTCATTGTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAGATAGGATTATCCAAATTTTGGACTTTATACTCATTGTGTGG  650

seq1  CTGAAACCCTAATCCTCCTGCCTCCACATTCACAAATACTGTGCTTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCCTAATCCTCCTGCCTCCACATTCACAAATACTGTGCTTATGG  700

seq1  GTATATGACAATCATATATTGTCACAGATTATATTTTTACAGATTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGACAATCATATATTGTCACAGATTATATTTTTACAGATTTATTT  750

seq1  ATTTTTATTTTATGCGTGAGAGTGTTTCACCTGCACATGTGCGTATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTATGCGTGAGAGTGTTTCACCTGCACATGTGCGTATATAC  800

seq1  CGTATAAGCACCTGGAGGAGGGAAGAACAGGCTATCAGATTCTTTTAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATAAGCACCTGGAGGAGGGAAGAACAGGCTATCAGATTCTTTTAAAC  850

seq1  TGGAGTTATGGACAGTTGTGAGCTTCTATATGGAAGCTAGAAACTGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTATGGACAGTTGTGAGCTTCTATATGGAAGCTAGAAACTGAACC  900

seq1  CAGGTCCTCTATTAAGGACCGGGGTGAACATTTAAGTGCTCTTAAATGGT  950
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CAGGTCCTCTATT-AGGACCGGGGTG-ACATTTAAGTGCTCTTAAATGGT  948

seq1  GAACCATCTCTCCATATCCATGTAAAAGTTAATTATACATTATCAAATAA  1000
      ||||||||||| ||||||||||| |||||    ||||||||||| |||||
seq2  GAACCATCTCT-CATATCCATGT-AAAGT---ATATACATTATC-AATAA  992

seq1  TTTTCTTTCTCTTTTTTATCATTGTTAAACATTCCACTTATTGTCCATTT  1050
      || |     ||| |||||||| |||| |||| |||||||||||| |||||
seq2  TTCT-----TCTCTTTTATCA-TGTT-AACA-TCCACTTATTGT-CATTT  1033

seq1  TTAAGGTTTATTTATTATTATATCTAAGTACACTGTAG-CTGTCTTCAGA  1099
      |  ||  |||||||||| |||||||||| ||||||||| |||||||| ||
seq2  T--AG--TTATTTATTAATATATCTAAGAACACTGTAGCCTGTCTTC-GA  1078

seq1  TGCACCAGAAGAGCGTGTTGGATTTCATTATG  1131
      |||| ||||| | ||||||||| |||||||||
seq2  TGCAACAGAA-AACGTGTTGGA-TTCATTATG  1108