BAC Information

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BAC

Clone NameB6Ng01-134G11
Chromosome6 (Build37)
Map Location 120,416,586 - 120,569,722
singlet/doubletdoublet
Overlap geneIl17ra, Cecr6, Cecr5, 1700072O05Rik
Upstream geneWnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a
Downstream geneCecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134G11.bB6Ng01-134G11.g
ACCDH934709DH934710
length1,021529
definitionDH934709|Mus musculus domesticus DNA, BAC clone: B6Ng01-134G11, 5' end.DH934710|Mus musculus domesticus DNA, BAC clone: B6Ng01-134G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,416,586 - 120,417,613)(120,569,187 - 120,569,722)
sequence
cacctcaaaacctggatgactgtaatgtccccacagaaaccaaccctgaa
gacaccagaagtgattgtagttcccggaatgtttttttgttggcctgcct
aggtaggcctcttagttccccatttactgccattcttgaggaagaagccc
tgtaagcagcacccgggagttcaccagcgtgaatgctcacactgctcaca
gacaggatatctgttaccattgccagttcgttttcctgagtgcttgtggt
tttgacttgtggtagaatgactgtttggcatcgcccctgtgtcttgtggt
cgccggaagctgtgctcagcccttctactcttccctaagttaaaaagttg
tgttctgcgggtgctcccctggtggactttagcatcaattaccaacgagc
aaaccaaagcctggtgttcagtcagagaagacctggacctaggcaagcct
ccccatcccctgttcctaagtcctgtgtcctcaccttgaagggtgtaggg
aggggcctcctcatggctctgtctgtgaaggcctcaggctgcgtacactg
ggtgctctgccagcctgtatcaggcagttggcaatgcatgctcaatgccc
agagctaaacacttcttcttttaatcatcctgctctgagtacagaggaga
agtctgtgtgttgtaaacatccctttactggaggcagggtagcagtgctg
gccatggttctggagcaaagcaggctcactgtagctcttcaacctggagc
cacctggctactctccgtaacagggagacatgttctgagatgtgtcttgg
taggtgatctaatcctggtgtgaacttcacagagtacacatacgtgcata
gacctggagggtaccatcagcgcagcctcttgatgtagcaaagacgtgga
agcagatatgtagactgctggtcgcattacagtttacagggaacttttaa
ggatatgccttaaataatgataaaagcgcgcgtcagcattagctgctggc
ataaactcctctcattctgaa
ataagaacctcactcccccgcaaaaaaaataattcaaatttgtaagccag
ggagaggggatagcgatgcacgcctttaatcccatcacttggaaggagag
tttgaggccagcctgatctacagagtgaattccagaacacgcagagctac
acagaaaccctgtcttgaaaagaaaaaaaaaaacaagcaaagaaaattta
gaggaagaaagacccctgaggatagtggcacctgcctgtaattccagcct
ttgggaagcagaggcaggagaatcaacaaattcaaggccagcagggactc
aacagcaagatctctcaagataaagaaggacgaaaggaaggaaagaaagt
aagtatatctagaggaaagaggagcagccttgggccctgtgccttcactg
ctgggtggggttgggtggggacctgagatagggtggggaaagcccctttt
ttacgccacagtaattaaataaaactcggtcctgttgctttgggcaaaga
ataaagaagcgattgatgctctgcttgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_120416586_120417613
seq2: B6Ng01-134G11.b_55_1075

seq1  CACCTCAAAACCTGGATGACTGTAATGTCCCCACAGAAACCAACCCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAAAACCTGGATGACTGTAATGTCCCCACAGAAACCAACCCTGAA  50

seq1  GACACCAGAAGTGATTGTAGTTCCCGGAATGTTTTTTTGTTGGCCTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGAAGTGATTGTAGTTCCCGGAATGTTTTTTTGTTGGCCTGCCT  100

seq1  AGGTAGGCCTCTTAGTTCCCCATTTACTGCCATTCTTGAGGAAGAAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCCTCTTAGTTCCCCATTTACTGCCATTCTTGAGGAAGAAGCCC  150

seq1  TGTAAGCAGCACCCGGGAGTTCACCAGCGTGAATGCTCACACTGCTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAGCACCCGGGAGTTCACCAGCGTGAATGCTCACACTGCTCACA  200

seq1  GACAGGATATCTGTTACCATTGCCAGTTCGTTTTCCTGAGTGCTTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATATCTGTTACCATTGCCAGTTCGTTTTCCTGAGTGCTTGTGGT  250

seq1  TTTGACTTGTGGTAGAATGACTGTTTGGCATCGCCCCTGTGTCTTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTGTGGTAGAATGACTGTTTGGCATCGCCCCTGTGTCTTGTGGT  300

seq1  CGCCGGAAGCTGTGCTCAGCCCTTCTACTCTTCCCTAAGTTAAAAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGAAGCTGTGCTCAGCCCTTCTACTCTTCCCTAAGTTAAAAAGTTG  350

seq1  TGTTCTGCGGGTGCTCCCCTGGTGGACTTTAGCATCAATTACCAACGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCGGGTGCTCCCCTGGTGGACTTTAGCATCAATTACCAACGAGC  400

seq1  AAACCAAAGCCTGGTGTTCAGTCAGAGAAGACCTGGACCTAGGCAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGCCTGGTGTTCAGTCAGAGAAGACCTGGACCTAGGCAAGCCT  450

seq1  CCCCATCCCCTGTTCCTAAGTCCTGTGTCCTCACCTTGAAGGGTGTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCCCTGTTCCTAAGTCCTGTGTCCTCACCTTGAAGGGTGTAGGG  500

seq1  AGGGGCCTCCTCATGGCTCTGTCTGTGAAGGCCTCAGGCTGCGTACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTCCTCATGGCTCTGTCTGTGAAGGCCTCAGGCTGCGTACACTG  550

seq1  GGTGCTCTGCCAGCCTGTATCAGGCAGTTGGCAATGCATGCTCAATGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTGCCAGCCTGTATCAGGCAGTTGGCAATGCATGCTCAATGCCC  600

seq1  AGAGCTAAACACTTCTTCTTTTAATCATCCTGCTCTGAGTACAGAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAACACTTCTTCTTTTAATCATCCTGCTCTGAGTACAGAGGAGA  650

seq1  AGTCTGTGTGTTGTAAACATCCCTTTACTGGAGGCAGGGTAGCAGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGTGTTGTAAACATCCCTTTACTGGAGGCAGGGTAGCAGTGCTG  700

seq1  GCCATGGTTCTGGAGCAAAGCAGGCTCACTGTAGCTCTTCAACCTGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTTCTGGAGCAAAGCAGGCTCACTGTAGCTCTTCAACCTGGAGC  750

seq1  CACCTGGCTACTCTCCGTAACAGGGAGACATGTTCTGAGATGTGTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTACTCTCCGTAACAGGGAGACATGTTCTGAGATGTGTCTTGG  800

seq1  TAGGTGATCTAATCCTGGTGTGAACTTCACAGAGTACACATACGTGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGATCTAATCCTGGTGTGAACTTCACAGAGTACACATACGTGCATA  850

seq1  GACCTGGAGGGTACCATCAGCGCAGCCTCTTGATGTAGCCAAAGACGTGG  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACCTGGAGGGTACCATCAGCGCAGCCTCTTGATGTAG-CAAAGACGTGG  899

seq1  TAAGCAGATTATGTAAGACTGCTGCCAGCATTACAGTTTACAGTGAACTT  950
       ||||||| ||||| |||||||||   |||||||||||||||| ||||||
seq2  -AAGCAGA-TATGT-AGACTGCTGGTCGCATTACAGTTTACAGGGAACTT  946

seq1  TTAAAGTATATGCTTAAAATAATGATAAAAAGCGCAGTTCAGTATTAGCT  1000
      || ||| |||||| | |||||||||| ||||||||   |||| |||||||
seq2  TT-AAGGATATGCCTTAAATAATGAT-AAAAGCGCGCGTCAGCATTAGCT  994

seq1  GCTGTCATAATCTCTTCATCATTCTGAA  1028
      |||| ||||| ||| || ||||||||||
seq2  GCTGGCATAAACTCCTC-TCATTCTGAA  1021

seq1: chr6_120569187_120569722
seq2: B6Ng01-134G11.g_68_601 (reverse)

seq1  TCAAGCAGAGCAGCAATGGCTTCTTTCTTCTTTGCCCAAAGCACCAGGCC  50
      |||||||||||| |||| |||||||| |||||||||||||||| |||| |
seq2  TCAAGCAGAGCATCAATCGCTTCTTTATTCTTTGCCCAAAGCAACAGGAC  50

seq1  CTAGTTTCAGTTAATTACTGTGAGGTTGTAACCTGGGGCTTTCCCCACCC  100
      | ||||| | ||||||||||||  ||   ||   ||||||||||||||||
seq2  CGAGTTTTATTTAATTACTGTGGCGT--AAAAAAGGGGCTTTCCCCACCC  98

seq1  TATCTCAGGTCCCCACCCAACCCCACCCAGCAGTGAAGGCACAGGGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGGTCCCCACCCAACCCCACCCAGCAGTGAAGGCACAGGGCCCA  148

seq1  AGGCTGCTCCTCTTTCCTCTAGATATACTTACTTTCTTTCCTTCCTTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTCCTCTTTCCTCTAGATATACTTACTTTCTTTCCTTCCTTTCG  198

seq1  TCCTTCTTTATCTTGAGAGATCTTGCTGTTGAGTCCCTGCTGGCCTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTATCTTGAGAGATCTTGCTGTTGAGTCCCTGCTGGCCTTGAA  248

seq1  TTTGTTGATTCTCCTGCCTCTGCTTCCCAAAGGCTGGAATTACAGGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATTCTCCTGCCTCTGCTTCCCAAAGGCTGGAATTACAGGCAGG  298

seq1  TGCCACTATCCTCAGGGGTCTTTCTTCCTCTAAATTTTCTTTGCTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTATCCTCAGGGGTCTTTCTTCCTCTAAATTTTCTTTGCTTGTTT  348

seq1  TTTTTTTTCTTTTCAAGACAGGGTTTCTGTGTAGCTCTGCGTGTTCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTTCAAGACAGGGTTTCTGTGTAGCTCTGCGTGTTCTGGA  398

seq1  ATTCACTCTGTAGATCAGGCTGGCCTCAAACTCTCCTTCCAAGTGATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCTGTAGATCAGGCTGGCCTCAAACTCTCCTTCCAAGTGATGGG  448

seq1  ATTAAAGGCGTGCATCGCTATCCCCTCTCCCTGGCTTACAAATTTGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCGTGCATCGCTATCCCCTCTCCCTGGCTTACAAATTTGAATT  498

seq1  ATTTTTTTTGCGGGGGAGTGAGGTTCTTATGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTGCGGGGGAGTGAGGTTCTTATGAATTC  534