BAC Information

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BAC

Clone NameB6Ng01-134M21
Chromosome6 (Build37)
Map Location 35,799,072 - 35,939,554
singlet/doubletdoublet
Overlap geneLOC100039327
Upstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134M21.bB6Ng01-134M21.g
ACCDH935009DH935010
length1,1821,115
definitionDH935009|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M21, 5' end.DH935010|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,799,072 - 35,800,262)(35,938,434 - 35,939,554)
sequence
gaattcccatttctgtgatgggtaataagagacccactgttccagtctgt
ggtttaacaagctgttggatgtgaggaagaggtttagctctgtcacactc
taatcctgctcatatttgtttagctacctggtaaaatgctttttttgaaa
taatgcatccataataataaataatggttcatttacatgtatgtgtgtgt
gtgtgtgttcatatatatctgaatgtatctttggaagctagaagagggta
tcagatcccctgaaactagagttacaggtgattgttgtgtgtcatcctac
ataggttctaggaactgaactctggacctttgcaagagcaagacgtgtgc
ttaacagctaagccatctctccaggcctgtcatttactgggcatattata
atcactgctcttcaggtaacctttaaacccagtaaaccggcaatccctta
cataagtatcagtgcttctcccagagatctacctactgagatatgtgaag
aggagacatttattttggtttatatgctcaatctcaaggttggttgtttt
catacctccaagtatttgttgcaatgaggaatgaatgatgacagatgaca
taaagtgtgaaggcttttgtcatttgtcttgcattcacttcttattcaat
gaaagtcaatttggatcagataaacatgccatgaatcactcatgatgggg
aaacagatgcatctacaagagagaaggaaatgaccagaaaacaaatggca
cctggcccgtgtctggtgagtgacttctgtccatgttccctgggtttatc
tagaggcagtagccggggtccctacatgaccccagcaccctgctgccatc
ttccttgatttccctgatcacctagagctgcagccagccatactgcaggg
ctgacatctaaagcccagtctttgatcttttcagcacgtaccttggttca
ggcagaggctttggggcttattagtagattcatagtcttttagtctgctt
ctgtttgttggaagatttgaaatgagttcatatagattagagagaactgc
cctttctttattcctttctggaagccagaagccataggctcagatgtatg
cagagagaaaggtaacttcctgaggggctgctcatgtcccgctacatctg
gggtccggactggctatacctcctcccctcag
gaattcacggtttgaaaacacagtgaaaatcatctaggttcaatggctca
ttctgtgaataactcacaatgtggagaccccaacaaatgtccgtttaatg
tttgctcagagtcctttgaattctgtacagtccctaagaattgtgggtag
tccaggagatgcgaaaagctgcattagaatatgtccaggagatggaagat
gctggattagaacattcatccactatctcacagccttaaataataaataa
acaaacaaaacaatctctatcagctctcacttctcacttcctgtacatgt
gagctatcctcggcaatagactgccaagagtctggaatcccaaacaccag
tgatgacttgaaagtgtctgattatttaaagtagtgaaatgtcacatttg
gcaccttgcctgagaggcaaccgctgtgcttagctagtgtgtgagcagtt
ggtgggccctgccaactgacaagccaagtcaaaaatagtgctcacatcaa
cagtcaaaaccacatggcttaactgaaagcccagaaactgtggcactaac
tgggccaaaatgaagagctagaaaagtgtatggaaaatcaccagcctggc
tgccagcctgctgggcctcagtaagaccactggcttcactgagccgttct
gggtgtaaggtatgtattaattatacataaatcacttgaaacttaaaaaa
cacattggatctttagaaaaaaagtatgttttctgtagaatattggttta
ttttgaaatattttatttaattgtactgtctggtctcttaactgtacagg
tacacagaactgctgtagtttataaaacacagttctggagggcccacata
ctaaagtatcactgtgattttctttctgtgactgattttatttcatttaa
tgtaatatttaccatttacatacacctggctacaaataatgaagttcgtc
ttctcgtgctgaacagtattccagtgtgtacacacacacattttctatat
cattccctgatctatagacacttgtcattctataccttagcccttgtgat
agccaccatagcattgcatccattcctttagaaatgcgctatttatccca
gagatggtataaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35799072_35800262
seq2: B6Ng01-134M21.b_49_1230

seq1  GAATTCCCATTTCTGTGATGGGTAATAAGAGACCCACTGTTCCAGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTCTGTGATGGGTAATAAGAGACCCACTGTTCCAGTCTGT  50

seq1  GGTTTAACAAGCTGTTGGATGTGAGGAAGAGGTTTAGCTCTGTCACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAACAAGCTGTTGGATGTGAGGAAGAGGTTTAGCTCTGTCACACTC  100

seq1  TAATCCTGCTCATATTTGTTTAGCTACCTGGTAAAATGCTTTTTTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGCTCATATTTGTTTAGCTACCTGGTAAAATGCTTTTTTTGAAA  150

seq1  TAATGCATCCATAATAATAAATAATGGTTCATTTACATGTATGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATCCATAATAATAAATAATGGTTCATTTACATGTATGTGTGTGT  200

seq1  GTGTGTGTTCATATATATCTGAATGTATCTTTGGAAGCTAGAAGAGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTCATATATATCTGAATGTATCTTTGGAAGCTAGAAGAGGGTA  250

seq1  TCAGATCCCCTGAAACTAGAGTTACAGGTGATTGTTGTGTGTCATCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCCCTGAAACTAGAGTTACAGGTGATTGTTGTGTGTCATCCTAC  300

seq1  ATAGGTTCTAGGAACTGAACTCTGGACCTTTGCAAGAGCAAGACGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTCTAGGAACTGAACTCTGGACCTTTGCAAGAGCAAGACGTGTGC  350

seq1  TTAACAGCTAAGCCATCTCTCCAGGCCTGTCATTTACTGGGCATATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCTAAGCCATCTCTCCAGGCCTGTCATTTACTGGGCATATTATA  400

seq1  ATCACTGCTCTTCAGGTAACCTTTAAACCCAGTAAACCGGCAATCCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGCTCTTCAGGTAACCTTTAAACCCAGTAAACCGGCAATCCCTTA  450

seq1  CATAAGTATCAGTGCTTCTCCCAGAGATCTACCTACTGAGATATGTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTATCAGTGCTTCTCCCAGAGATCTACCTACTGAGATATGTGAAG  500

seq1  AGGAGACATTTATTTTGGTTTATATGCTCAATCTCAAGGTTGGTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACATTTATTTTGGTTTATATGCTCAATCTCAAGGTTGGTTGTTTT  550

seq1  CATACCTCCAAGTATTTGTTGCAATGAGGAATGAATGATGACAGATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCCAAGTATTTGTTGCAATGAGGAATGAATGATGACAGATGACA  600

seq1  TAAAGTGTGAAGGCTTTTGTCATTTGTCTTGCATTCACTTCTTATTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTGAAGGCTTTTGTCATTTGTCTTGCATTCACTTCTTATTCAAT  650

seq1  GAAAGTCAATTTGGATCAGATAAACATGCCATGAATCACTCATGATGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCAATTTGGATCAGATAAACATGCCATGAATCACTCATGATGGGG  700

seq1  AAACAGATGCATCTACAAGAGAGAAGGAAATGACCAGAAAACAAATGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGCATCTACAAGAGAGAAGGAAATGACCAGAAAACAAATGGCA  750

seq1  CCTGGCCCGTGTCTGGTGAGTGACTTCTGTCCATGTTCCCT-GGTTTATC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTGGCCCGTGTCTGGTGAGTGACTTCTGTCCATGTTCCCTGGGTTTATC  800

seq1  TAGAGGCAGTAGCCGGGGTCCCTACATGACCCCAGCACCCTGCTGCCATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAGTAGCCGGGGTCCCTACATGACCCCAGCACCCTGCTGCCATC  850

seq1  TTCCTTGATTTCCCTGATCACCTAGAGCTGCAGCCAGCCATACTGCAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGATTTCCCTGATCACCTAGAGCTGCAGCCAGCCATACTGCAGGG  900

seq1  CTGACATCTAAAGCCCAGTCTTTGATCTTTTCAGCACGGTACCTTGGTTC  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGACATCTAAAGCCCAGTCTTTGATCTTTTCAGCAC-GTACCTTGGTTC  949

seq1  AGGCAGAGGCTTTGGGGCTTATTAGGTAGATTCATAGTCTTTTAGTCTGC  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGCAGAGGCTTTGGGGCTTATTA-GTAGATTCATAGTCTTTTAGTCTGC  998

seq1  -TCTGTTTGTTGGAAGATTTGAGATGAGTTCATTATAGATTAGAGAAGAC  1048
       ||||||||||||||||||||| ||||||||| |||||||||||||  ||
seq2  TTCTGTTTGTTGGAAGATTTGAAATGAGTTCA-TATAGATTAGAGAGAAC  1047

seq1  TGCCCTTTCTTTATTCCTTTCTGGAAGCCCAGAGGCTATGGGGCTCAGAT  1098
      ||||||||||||||||||||||||||| ||||| || ||  |||||||||
seq2  TGCCCTTTCTTTATTCCTTTCTGGAAG-CCAGAAGCCAT-AGGCTCAGAT  1095

seq1  GAATGCAG-GAGAGAGGTGATCTTCCTGAGGGGCTGGCTCAGTGCTCCCG  1147
      | |||||| |||| |||| | |||||||||||||| ||||| || |||||
seq2  GTATGCAGAGAGAAAGGT-AACTTCCTGAGGGGCT-GCTCA-TG-TCCCG  1141

seq1  CTACATTCTGGGGTCCCGGTCTGGCTATACTCTCTTCCCCTCAG  1191
      ||||| |||||||| |||| |||||||||| ||| |||||||||
seq2  CTACA-TCTGGGGT-CCGGACTGGCTATAC-CTCCTCCCCTCAG  1182

seq1: chr6_35938434_35939554
seq2: B6Ng01-134M21.g_67_1181 (reverse)

seq1  AATTTATACCCATCTCTGGGAATAATAGCGGCATGCTAAAGGGATGGATG  50
      |||||||| ||||||||||||  |||||||   | ||||||| |||||||
seq2  AATTTATA-CCATCTCTGGGATAAATAGCGCATTTCTAAAGGAATGGATG  49

seq1  C-ATGCTATGGTGGCTATTCACAAGGGCTAAGGTATAGAATGGACAAGTG  99
      | ||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  CAATGCTATGGTGGCTA-TCACAAGGGCTAAGGTATAGAAT-GACAAGTG  97

seq1  TCTATAGATCAGTGAATGGATATAGAAAATGTGTGGTGTGTACACACTGG  149
      |||||||||||| |||| |||||||||||||||| |||||||||||||||
seq2  TCTATAGATCAGGGAAT-GATATAGAAAATGTGT-GTGTGTACACACTGG  145

seq1  AATACTGTTCAGCACGAGAAGAACGGAACTTCATTATTTGTAGCCAGGTG  199
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  AATACTGTTCAGCACGAGAAGA--CGAACTTCATTATTTGTAGCCAGGTG  193

seq1  TATGTAAATGGTAAATATTACATTAAATGAAATAAAATCAGTCACAGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAATGGTAAATATTACATTAAATGAAATAAAATCAGTCACAGAAA  243

seq1  GAAAATCACAGTGATACTTTAGTATGTGGGCCCTCCAGAACTGTGTTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCACAGTGATACTTTAGTATGTGGGCCCTCCAGAACTGTGTTTTA  293

seq1  TAAACTACAGCAGTTCTGTGTACCTGTACAGTTAAGAGACCAGACAGTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACAGCAGTTCTGTGTACCTGTACAGTTAAGAGACCAGACAGTAC  343

seq1  AATTAAATAAAATATTTCAAAATAAACCAATATTCTACAGAAAACATACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATAAAATATTTCAAAATAAACCAATATTCTACAGAAAACATACT  393

seq1  TTTTTTCTAAAGATCCAATGTGTTTTTTAAGTTTCAAGTGATTTATGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTAAAGATCCAATGTGTTTTTTAAGTTTCAAGTGATTTATGTAT  443

seq1  AATTAATACATACCTTACACCCAGAACGGCTCAGTGAAGCCAGTGGTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATACATACCTTACACCCAGAACGGCTCAGTGAAGCCAGTGGTCTT  493

seq1  ACTGAGGCCCAGCAGGCTGGCAGCCAGGCTGGTGATTTTCCATACACTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCCCAGCAGGCTGGCAGCCAGGCTGGTGATTTTCCATACACTTT  543

seq1  TCTAGCTCTTCATTTTGGCCCAGTTAGTGCCACAGTTTCTGGGCTTTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCTTCATTTTGGCCCAGTTAGTGCCACAGTTTCTGGGCTTTCAG  593

seq1  TTAAGCCATGTGGTTTTGACTGTTGATGTGAGCACTATTTTTGACTTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCATGTGGTTTTGACTGTTGATGTGAGCACTATTTTTGACTTGGC  643

seq1  TTGTCAGTTGGCAGGGCCCACCAACTGCTCACACACTAGCTAAGCACAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTTGGCAGGGCCCACCAACTGCTCACACACTAGCTAAGCACAGC  693

seq1  GGTTGCCTCTCAGGCAAGGTGCCAAATGTGACATTTCACTACTTTAAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCTCTCAGGCAAGGTGCCAAATGTGACATTTCACTACTTTAAATA  743

seq1  ATCAGACACTTTCAAGTCATCACTGGTGTTTGGGATTCCAGACTCTTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACACTTTCAAGTCATCACTGGTGTTTGGGATTCCAGACTCTTGGC  793

seq1  AGTCTATTGCCGAGGATAGCTCACATGTACAGGAAGTGAGAAGTGAGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTGCCGAGGATAGCTCACATGTACAGGAAGTGAGAAGTGAGAGC  843

seq1  TGATAGAGATTGTTTTGTTTGTTTATTTATTATTTAAGGCTGTGAGATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAGATTGTTTTGTTTGTTTATTTATTATTTAAGGCTGTGAGATAG  893

seq1  TGGATGAATGTTCTAATCCAGCATCTTCCATCTCCTGGACATATTCTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAATGTTCTAATCCAGCATCTTCCATCTCCTGGACATATTCTAAT  943

seq1  GCAGCTTTTCGCATCTCCTGGACTACCCACAATTCTTAGGGACTGTACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTTCGCATCTCCTGGACTACCCACAATTCTTAGGGACTGTACAG  993

seq1  AATTCAAAGGACTCTGAGCAAACATTAAACGGACATTTGTTGGGGTCTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAGGACTCTGAGCAAACATTAAACGGACATTTGTTGGGGTCTCC  1043

seq1  ACATTGTGAGTTATTCACAGAATGAGCCATTGAACCTAGATGATTTTCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGAGTTATTCACAGAATGAGCCATTGAACCTAGATGATTTTCAC  1093

seq1  TGTGTTTTCAAACCGTGAATTC  1121
      ||||||||||||||||||||||
seq2  TGTGTTTTCAAACCGTGAATTC  1115