BAC Information

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BAC

Clone NameB6Ng01-134N19
Chromosome6 (Build37)
Map Location 42,299,372 - 42,423,167
singlet/doubletdoublet
Overlap geneZyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457
Upstream geneTry10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik
Downstream geneOlfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134N19.bB6Ng01-134N19.g
ACCDH935053DH935054
length4571,144
definitionDH935053|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N19, 5' end.DH935054|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,299,372 - 42,299,834)(42,422,040 - 42,423,167)
sequence
ctagaagccttaagaggctgcctagctcaggaagttagcattcccccagc
ttaggctcctgctcacacactagtgggttacagaaggccggcctgggagc
caagtgcccgcagggccaacgtcccttcaccatcccccgcccacccagga
gtacagttccatcccagtcctgcgttccgggactgaccacaggacacgtg
ggacgcggagctgaagctgcagggaggggcggggtcggtcaatggcaggc
aggcccggggtgcgcgactgagctgcttcaggaccgctgggattactagc
cagcctgctcagcctggagtgcggacagtgagtcagttctccagcactcg
cgggtcgggaggagggaggtggggtaggtggcaggtcaggaaatgacatc
agaggcctgtgctggggaagggtggtctgtgcccggcgggggcggtcgtg
agtaagg
gaattcccacagtgagaggattgagagcttcctcattacttcacgcttgg
tgtcaatatgtctgcctcctattgctcaccaaaaactcacactttcttaa
atatctaaataaaggctaaaatttaattattatccaattactgaccttgt
tcttttcatagcatttaacacaatttaattaatgtgtataattttcaatt
atactttgtgtccgtgattacattatatgaatgaagatggggggacttgt
gattctgtcttgtgtatcacacagagagggacccctacaatactcctagc
acacaggatgtatccatctcaaagagacacacatcctaaggactgatggc
tacaggaaggagtatgtaggaggattctcttctacactgccacttacact
ggagtttattgagaacaagaatagcagcagaatggatgctttcaaaatgt
ttcaaaggaatgttgaagtacccatctcaggcccagtggtacccataaga
ctttagctgctactgtctgatagagaagaatctgcctttcattccaattt
tcccattgtaattaaaaccttttctttttcaagctttcctttaagagttt
tgttgttgttattgttgtttgccctcactttcattttaaatcttgtatta
ttctcctttttccatcattcattttacttgtattcagtcctacattggca
gactactccttatattgtttcaattggaagagtgctagaaattttttaag
gtaaattgagagtggagggttggctcttcgcaatctcatgtatttgtgtc
agtggccaaatcttcctttctccattgttttggatatgtcctttccctaa
tcacctaggttaaagcaccaggctgtgtcccaggtccaactgcaatccta
gcctaaggactcagtgcatagcctatgctgacacctgtacttgccctctc
tgactgctcttcctctactcctggccagcagtcccaactgcttccatgta
ggagagaccattgcaccctgggtaagtgaggtttatccctcatgggttct
ctccggtgacaaacaccatcccaagcctggacttctttgtcctcttgggg
tcatctactgggtggaccctcggcctgggcaatgggcttcatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42299372_42299834
seq2: B6Ng01-134N19.b_45_507

seq1  GAATTCCTAGAAGCCTTAAGAGGCTGCCTAGCTCAGGAAGTTAGCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAAGCCTTAAGAGGCTGCCTAGCTCAGGAAGTTAGCATTCC  50

seq1  CCCAGCTTAGGCTCCTGCTCACACACTAGTGGGTTACAGAAGGCCGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTAGGCTCCTGCTCACACACTAGTGGGTTACAGAAGGCCGGCCT  100

seq1  GGGAGCCAAGTGCCCGCAGGGCCAACGTCCCTTCACCATCCCCCGCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAAGTGCCCGCAGGGCCAACGTCCCTTCACCATCCCCCGCCCAC  150

seq1  CCAGGAGTACAGTTCCATCCCAGTCCTGCGTTCCGGGACTGACCACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGTACAGTTCCATCCCAGTCCTGCGTTCCGGGACTGACCACAGGA  200

seq1  CACGTGGGACGCGGAGCTGAAGCTGCAGGGAGGGGCGGGGTCGGTCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGGACGCGGAGCTGAAGCTGCAGGGAGGGGCGGGGTCGGTCAATG  250

seq1  GCAGGCAGGCCCGGGGTGCGCGACTGAGCTGCTTCAGGACCGCTGGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGGCCCGGGGTGCGCGACTGAGCTGCTTCAGGACCGCTGGGATT  300

seq1  ACTAGCCAGCCTGCTCAGCCTGGAGTGCGGACAGTGAGTCAGTTCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCAGCCTGCTCAGCCTGGAGTGCGGACAGTGAGTCAGTTCTCCAG  350

seq1  CACTCGCGGGTCGGGAGGAGGGAGGTGGGGTAGGTGGCAGGTCAGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCGGGTCGGGAGGAGGGAGGTGGGGTAGGTGGCAGGTCAGGAAAT  400

seq1  GACATCAGAGGCCTGTGCTGGGGAAGGGTGGTCTGTGCCCGGCGGGGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGAGGCCTGTGCTGGGGAAGGGTGGTCTGTGCCCGGCGGGGGCG  450

seq1  GTGGTGAGTAGGG  463
      || ||||||| ||
seq2  GTCGTGAGTAAGG  463

seq1: chr6_42422040_42423167
seq2: B6Ng01-134N19.g_69_1212 (reverse)

seq1  CGATG-AGCCCATTGCCCA-GCAGAG---TCAACAGGTAGATGACCCCAA  45
      ||||| ||||||||||||| || |||    || |  |||||||||||| |
seq2  CGATGAAGCCCATTGCCCAGGCCGAGGGTCCACCCAGTAGATGACCCC-A  49

seq1  AGAGGACAAAG-AGTCCA-GCTT-GGAT-GTGTTTGTCACTGGAGAG-AC  90
      ||||||||||| |||||| |||| |||| ||||||||||| |||||| ||
seq2  AGAGGACAAAGAAGTCCAGGCTTGGGATGGTGTTTGTCACCGGAGAGAAC  99

seq1  CCATGA-GGATAAA-CTCACTTACCCAGGTTGC-ATTGTCTCT-CTTCAT  136
      |||||| ||||||| |||||||||||||| ||| || |||||| || |||
seq2  CCATGAGGGATAAACCTCACTTACCCAGGGTGCAATGGTCTCTCCTACAT  149

seq1  GG-AGCAGTTGGGACTGCTGGCCAGGAGTAGAGGAAGAGCAGTCAGAGAG  185
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGTTGGGACTGCTGGCCAGGAGTAGAGGAAGAGCAGTCAGAGAG  199

seq1  GGCAAGTACAGGTGTCAGCATAGGCTATGCACTGAGTCC-TAGGCTAGGA  234
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCAAGTACAGGTGTCAGCATAGGCTATGCACTGAGTCCTTAGGCTAGGA  249

seq1  TTGCAGTTGGACCTGGGACACAGCCTGGTGCTTTAACCTAGGTGATTAGG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTGGACCTGGGACACAGCCTGGTGCTTTAACCTAGGTGATTAGG  299

seq1  G-AAGGACATATCCAAAACAATGGAGAAAGGAAGATTTGGCCACTGACAC  333
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACATATCCAAAACAATGGAGAAAGGAAGATTTGGCCACTGACAC  349

seq1  AAATACATGAGATTGCGAAGAGCCAACCCTCCACTCTCAATTTACCTTAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGAGATTGCGAAGAGCCAACCCTCCACTCTCAATTTACCTTAA  399

seq1  AAAATTTCTAGCACTCTTCCAATTGAAACAATATAAGGAGTAGTCTGCCA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTAGCACTCTTCCAATTGAAACAATATAAGGAGTAGTCTGCCA  449

seq1  ATGTAGGACTGAATACAAGTAAAATGAATGATGGAAAAAGGAGAATAATA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGACTGAATACAAGTAAAATGAATGATGGAAAAAGGAGAATAATA  499

seq1  CAAGATTTAAAATGAAAGTGAGGGCAAACAACAATAACAACAACAAAACT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAAAATGAAAGTGAGGGCAAACAACAATAACAACAACAAAACT  549

seq1  CTTAAAGGAAAGCTTGAAAAAGAAAAGGTTTTAATTACAATGGGAAAATT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGAAAGCTTGAAAAAGAAAAGGTTTTAATTACAATGGGAAAATT  599

seq1  GGAATGAAAGGCAGATTCTTCTCTATCAGACAGTAGCAGCTAAAGTCTTA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAAGGCAGATTCTTCTCTATCAGACAGTAGCAGCTAAAGTCTTA  649

seq1  TGGGTACCACTGGGCCTGAGATGGGTACTTCAACATTCCTTTGAAACATT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACCACTGGGCCTGAGATGGGTACTTCAACATTCCTTTGAAACATT  699

seq1  TTGAAAGCATCCATTCTGCTGCTATTCTTGTTCTCAATAAACTCCAGTGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCATCCATTCTGCTGCTATTCTTGTTCTCAATAAACTCCAGTGT  749

seq1  AAGTGGCAGTGTAGAAGAGAATCCTCCTACATACTCCTTCCTGTAGCCAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCAGTGTAGAAGAGAATCCTCCTACATACTCCTTCCTGTAGCCAT  799

seq1  CAGTCCTTAGGATGTGTGTCTCTTTGAGATGGATACATCCTGTGTGCTAG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTAGGATGTGTGTCTCTTTGAGATGGATACATCCTGTGTGCTAG  849

seq1  GAGTATTGTAGGGGTCCCTCTCTGTGTGATACACAAGACAGAATCACAAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGTAGGGGTCCCTCTCTGTGTGATACACAAGACAGAATCACAAG  899

seq1  TCCCCCCATCTTCATTCATATAATGTAATCACGGACACAAAGTATAATTG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCATCTTCATTCATATAATGTAATCACGGACACAAAGTATAATTG  949

seq1  AAAATTATACACATTAATTAAATTGTGTTAAATGCTATGAAAAGAACAAG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATACACATTAATTAAATTGTGTTAAATGCTATGAAAAGAACAAG  999

seq1  GTCAGTAATTGGATAATAATTAAATTTTAGCCTTTATTTAGATATTTAAG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAATTGGATAATAATTAAATTTTAGCCTTTATTTAGATATTTAAG  1049

seq1  AAAGTGTGAGTTTTTGGTGAGCAATAGGAGGCAGACATATTGACACCAAG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGAGTTTTTGGTGAGCAATAGGAGGCAGACATATTGACACCAAG  1099

seq1  CGTGAAGTAATGAGGAAGCTCTCAATCCTCTCACTGTGGGAATTC  1128
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGTAATGAGGAAGCTCTCAATCCTCTCACTGTGGGAATTC  1144