BAC Information

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BAC

Clone NameB6Ng01-135K05
Chromosome6 (Build37)
Map Location 135,687,140 - 135,833,359
singlet/doubletdoublet
Overlap geneGrin2b
Upstream geneDusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135K05.bB6Ng01-135K05.g
ACCDH935624DH935625
length1,167848
definitionDH935624|Mus musculus domesticus DNA, BAC clone: B6Ng01-135K05, 5' end.DH935625|Mus musculus domesticus DNA, BAC clone: B6Ng01-135K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,687,140 - 135,688,310)(135,832,507 - 135,833,359)
sequence
gaattctgaggttaaactctctgacctctattttatagacagtggggata
acataaccaaacaagtaaaaacttggaattatacagagcacattaggttg
aggaaggagaggtagacagagattgaaagaggttgaatcattatgctctc
tcagaatttcagaagtcttttagaggaaaatatgaaacccaaatgaggag
gaagctggaatgaaacatgatcacctaaacttgcctcctctcaactctgc
ttaaagggacaaggacttctccagttgtgtcagactctgacctactatca
ctagacactaatcagtagaaatgtaaacatctcaaacaacacccccaaaa
cccaaaacccaaaacccaaaacccaaaaaccaaaaaccaaaaaccaaaac
caaccaaacaagcaaaagacaaagaaaacaagtacctactccaggatgtc
actaattcatacaaatgaaagtctagtttgctaaaattttgcatttgcat
agcacaatgaatcccaaaatcctttctactgatctacttggtaatagagt
ctggatccatttggctgtgactactggttataccagcatggcttatcagc
attccagctacaaacccctactcgttcttatagaaatccactcacgtttc
ttctcttctttgattcaacaatgctttttctaactagtgtagaagccaga
ttcaggtggaacctggaaacctgaccctggccttgtgtctctgatgtctt
ccctaataaaaaatgtcccatggacctagttgacagacccacgtgtctgg
tggacttcagaaccatgcagagtgaagatcatctctatctagattagttt
gtgtgtgaggattatgggtagactgtttttgggcaaggacatgaagagaa
atgcagaagatagtagtccggtgagatacatttctcagtgttcagcccat
gaccagaaagacacaggaaatgccttctggtatctacatctgagatcttt
gccttccacctcttcaccagaagaccgtgcaggacagattgagattgtag
aaacagacaaacatttgtttcactttctttctcctggaatagaaagaagc
actgcctacattcttgtctgtggttggccacatgtagggggtacactaac
tgagacctactcattcc
gaattctgcttgggttccctgaaatgctagatgctttgtgtgatacatct
ccagtgcctttgatagcatcagacatcgttatccttctggggaagaaaag
aggctaggtaaccccctgggggatccctctttggactgagaataagagga
ggcactaatattattcaccagagttcagaacccactgaatgccaaggacc
cacaggactcactggaatgggggctttctatgcaggagatctgacctcct
ttagaaacaatggagtctaggtcaactttaaatcacaaacataaaagtgt
catgtttcttagaatccccaaagttgttgggaaactttttattttttttt
cagtttttttttttctttaaaagaactgttcgttgtttcaaaccttcctc
tctatatcaagcctctgtcatcggcgatttcccctaccgtatcagaggaa
gcatcgtgcccaatgatctgctttcctcctgtttcctgggacttattaaa
agagctgactgcaaacagattttcactgcctcagtgtggacttacatcag
gcagcacccaataagagctgacaagctgacatctccaatccatcaacagt
gatggctcaagggaggggggaggggagaacaggaaggagagaattttatt
cccacccatttcctgagagacagtcttttggttgaatgatacaggatcca
tttttagaactctgtttaatttgggagccttgaggatttcacttttggaa
ctagggctaaaaacaatgctcacctaaggatgctaacagaaactgaaatt
ggtctttctggtccagaggagcgtaaggactgtaggaggaagaatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135687140_135688310
seq2: B6Ng01-135K05.b_48_1214

seq1  GAATTCTGAGGTTAAACTCTCTGACCTCTATTTTATAGACAGTGGGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGTTAAACTCTCTGACCTCTATTTTATAGACAGTGGGGATA  50

seq1  ACATAACCAAACAAGTAAAAACTTGGAATTATACAGAGCACATTAGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCAAACAAGTAAAAACTTGGAATTATACAGAGCACATTAGGTTG  100

seq1  AGGAAGGAGAGGTAGACAGAGATTGAAAGAGGTTGAATCATTATGCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAGAGGTAGACAGAGATTGAAAGAGGTTGAATCATTATGCTCTC  150

seq1  TCAGAATTTCAGAAGTCTTTTAGAGGAAAATATGAAACCCAAATGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTCAGAAGTCTTTTAGAGGAAAATATGAAACCCAAATGAGGAG  200

seq1  GAAGCTGGAATGAAACATGATCACCTAAACTTGCCTCCTCTCAACTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGAATGAAACATGATCACCTAAACTTGCCTCCTCTCAACTCTGC  250

seq1  TTAAAGGGACAAGGACTTCTCCAGTTGTGTCAGACTCTGACCTACTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGACAAGGACTTCTCCAGTTGTGTCAGACTCTGACCTACTATCA  300

seq1  CTAGACACTAATCAGTAGAAATGTAAACATCTCAAACAACACCCCCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACTAATCAGTAGAAATGTAAACATCTCAAACAACACCCCCAAAA  350

seq1  CCCAAAACCCAAAACCCAAAACCCAAAAACCAAAAACCAAAAACCAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACCCAAAACCCAAAACCCAAAAACCAAAAACCAAAAACCAAAAC  400

seq1  CAACCAAACAAGCAAAAGACAAAGAAAACAAGTACCTACTCCAGGATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAACAAGCAAAAGACAAAGAAAACAAGTACCTACTCCAGGATGTC  450

seq1  ACTAATTCATACAAATGAAAGTCTAGTTTGCTAAAATTTTGCATTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTCATACAAATGAAAGTCTAGTTTGCTAAAATTTTGCATTTGCAT  500

seq1  AGCACAATGAATCCCAAAATCCTTTCTACTGATCTACTTGGTAATAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATGAATCCCAAAATCCTTTCTACTGATCTACTTGGTAATAGAGT  550

seq1  CTGGATCCATTTGGCTGTGACTACTGGTTATACCAGCATGGCTTATCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCCATTTGGCTGTGACTACTGGTTATACCAGCATGGCTTATCAGC  600

seq1  ATTCCAGCTACAAACCCCTACTCGTTCTTATAGAAATCCACTCACGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGCTACAAACCCCTACTCGTTCTTATAGAAATCCACTCACGTTTC  650

seq1  TTCTCTTCTTTGATTCAACAATGCTTTTTCTAACTAGTGTAGAAGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTTGATTCAACAATGCTTTTTCTAACTAGTGTAGAAGCCAGA  700

seq1  TTCAGGTGGAACCTGGAAACCTGACCCTGGCCTTGTGTCTCTGATGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGGAACCTGGAAACCTGACCCTGGCCTTGTGTCTCTGATGTCTT  750

seq1  CCCTAATAAAAAATGTCCCATGGACCTAGTTGACAGACCCACGTGTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATAAAAAATGTCCCATGGACCTAGTTGACAGACCCACGTGTCTGG  800

seq1  TGGACTTCAGAACCATGCAGAGTGAAGATCATCTCTATCTAGATTAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCAGAACCATGCAGAGTGAAGATCATCTCTATCTAGATTAGTTT  850

seq1  GTGTGTGAGGATTATGGGTAGACTG-TTTTGGGCAAGGACATGAAGAGAA  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGTGTGAGGATTATGGGTAGACTGTTTTTGGGCAAGGACATGAAGAGAA  900

seq1  ATGCAGAAGATAGTAGTCCGGTGAGATACATTTCTCAGTGTTCAGCCCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAGATAGTAGTCCGGTGAGATACATTTCTCAGTGTTCAGCCCAT  950

seq1  GACCAGAAAGACACAGGAAATGCCTTCTGGTATCTACATCTGAGGATCCT  999
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  GACCAGAAAGACACAGGAAATGCCTTCTGGTATCTACATCTGA-GATCTT  999

seq1  TGCCCTCCACCTCTTCAACCAGAAGACCGTGGCAGGACAGAATGAAGGAT  1049
      |||| ||||||||||| ||||||||||||| |||||||||| || ||  |
seq2  TGCCTTCCACCTCTTC-ACCAGAAGACCGT-GCAGGACAGATTG-AGATT  1046

seq1  GTAGAAACAGACAAACATTTGTTTCACTTTCCTTCCTCCTGGAATAGAAA  1099
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  GTAGAAACAGACAAACATTTGTTTCACTTT-CTTTCTCCTGGAATAGAAA  1095

seq1  G-AGCACTGCCCTACAT--CTGTCTGGTGTTGTGCCACATGTAGGGTG-A  1145
      | ||||||| |||||||   ||||||  |||| ||||||||||||| | |
seq2  GAAGCACTG-CCTACATTCTTGTCTGTGGTTG-GCCACATGTAGGGGGTA  1143

seq1  CATCTAACTGTAGCCTACTTCATTCC  1171
      || |||||||   ||||| |||||||
seq2  CA-CTAACTGAGACCTAC-TCATTCC  1167

seq1: chr6_135832507_135833359
seq2: B6Ng01-135K05.g_70_917 (reverse)

seq1  GCTATTCTTCCTCCTACAGTCCTTACCGCTCCTCTGGACCTAGAAAGTAC  50
      ||||||||||||||||||||||||| |||||||||||||| |||||| ||
seq2  GCTATTCTTCCTCCTACAGTCCTTA-CGCTCCTCTGGACC-AGAAAG-AC  47

seq1  CATTTTCAGTTTCTGTTTAGCATCCTTAAGGTGAGCATTGTTTTTAGCCC  100
      || |||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CAATTTCAGTTTCTG-TTAGCATCCTT-AGGTGAGCATTGTTTTTAGCCC  95

seq1  TAGTTTCCAAAAGTGAAATCCTCAAGGCTCCCAAATTAAACAGAGTTCTA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAG-TTCCAAAAGTGAAATCCTCAAGGCTCCCAAATTAAACAGAGTTCTA  144

seq1  AAAATGGATCCTGTATCATTCAACC-AAAGACTGTCTCTCAGGAAATGGG  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAATGGATCCTGTATCATTCAACCAAAAGACTGTCTCTCAGGAAATGGG  194

seq1  TGGGAATAAAATTCTCTCCTTCCTGTTCTCCCCTCCCCCCTCCCTTGAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAAAATTCTCTCCTTCCTGTTCTCCCCTCCCCCCTCCCTTGAGC  244

seq1  CATCACTGTTGATGGATTGGAGATGTCAGCTTGTCAGCTCTTATTGGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGTTGATGGATTGGAGATGTCAGCTTGTCAGCTCTTATTGGGTG  294

seq1  CTGCCTGATGTAAGTCCACACTGAGGCAGTGAAAATCTGTTTGCAGTCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGATGTAAGTCCACACTGAGGCAGTGAAAATCTGTTTGCAGTCAG  344

seq1  CTCTTTTAATAAGTCCCAGGAAACAGGAGGAAAGCAGATCATTGGGCACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAATAAGTCCCAGGAAACAGGAGGAAAGCAGATCATTGGGCACG  394

seq1  ATGCTTCCTCTGATACGGTAGGGGAAATCGCCGATGACAGAGGCTTGATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCTCTGATACGGTAGGGGAAATCGCCGATGACAGAGGCTTGATA  444

seq1  TAGAGAGGAAGGTTTGAAACAACGAACAGTTCTTTTAAAGAAAAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGAAGGTTTGAAACAACGAACAGTTCTTTTAAAGAAAAAAAAAA  494

seq1  ACTGAAAAAAAAATAAAAAGTTTCCCAACAACTTTGGGGATTCTAAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAAAAATAAAAAGTTTCCCAACAACTTTGGGGATTCTAAGAAA  544

seq1  CATGACACTTTTATGTTTGTGATTTAAAGTTGACCTAGACTCCATTGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTTTTATGTTTGTGATTTAAAGTTGACCTAGACTCCATTGTTT  594

seq1  CTAAAGGAGGTCAGATCTCCTGCATAGAAAGCCCCCATTCCAGTGAGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGGTCAGATCTCCTGCATAGAAAGCCCCCATTCCAGTGAGTCC  644

seq1  TGTGGGTCCTTGGCATTCAGTGGGTTCTGAACTCTGGTGAATAATATTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCCTTGGCATTCAGTGGGTTCTGAACTCTGGTGAATAATATTAG  694

seq1  TGCCTCCTCTTATTCTCAGTCCAAAGAGGGATCCCCCAGGGGGTTACCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTCTTATTCTCAGTCCAAAGAGGGATCCCCCAGGGGGTTACCTA  744

seq1  GCCTCTTTTCTTCCCCAGAAGGATAACGATGTCTGATGCTATCAAAGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTTCTTCCCCAGAAGGATAACGATGTCTGATGCTATCAAAGGCA  794

seq1  CTGGAGATGTATCACACAAAGCATCTAGCATTTCAGGGAACCCAAGCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATGTATCACACAAAGCATCTAGCATTTCAGGGAACCCAAGCAGA  844

seq1  ATTC  853
      ||||
seq2  ATTC  848