BAC Information

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BAC

Clone NameB6Ng01-136F03
Chromosome6 (Build37)
Map Location 126,015,039 - 126,143,991
singlet/doubletdoublet
Overlap geneNtf3, LOC100043565
Upstream geneGpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136F03.bB6Ng01-136F03.g
ACCDH936122DH936123
length2861,144
definitionDH936122|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F03, 5' end.DH936123|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,143,706 - 126,143,991)(126,015,039 - 126,016,199)
sequence
agccctgagttgatccagtgaagtgagtcaaaccaagagtctttccattt
gcaaatgagcaatggtagatctgtaggatgctcaccaagagcctgattcc
ttttcttagtcgtctccaactgtagtaagccttcactaagcccactttaa
gcatcactttcacttgtcccctttaactggtccctctcttaagtccatgc
cacatcacttcctgtcattatgagtacaaccaattcctaatttttcctcc
tgaaacatgtttgtttttcccatccagtgtgtgtgt
gaattctattatactttaaatgaataatctcttatataagttttttctat
gtcaaaaataaagaaaaataattggtcaactttttaatgaggtcgctgta
attgtagcttcaacatcatcagtgtcagtccagagacttctttcatttct
gagtacatatgttcaattacctctccaaagtatttgctaataaaaatatt
tttatcatttttaaaatactcttatgggggtgcaccaggagtggaatcag
tacttggcaatcacttgggtaaattaataaatcaatacatagatggtaaa
gtgaatagattttcttgatagatgaaaaaaatcattgcatgatatggaaa
aagcatgaacaactcttaatagagttcgtgaataagaaaaaacagtagca
ctttccagataacagtacccttggctttctgttgctgtaaagaaccctac
gaccaaaaccaaacaaggaggaaaaggtttatttcatctaacagttgcaa
tccaccatgaagggaagtcagggcagaagctcaaagttggaggaaggtac
agaaacagaagtcatagggggaacctgcctggcttagattgctcagcttg
atttttacatagcccaggatcacttgcctagggatggtgccacccacagt
gggctggggctttctacatcaattagaaattaagaaaatgcctgataggc
atacccacaggttaatctgattgaggaaactcctcaactgagttcccctc
tttcctagtgactctaggttgtatcacgtccgtagctacagctgtgacaa
ctacagatacaaatctctttgcttgattaaaatatatgcaaagataccac
aacaaacactattttcaagagggagagagacttgaattatattttgctta
attacatctcaatacaaaatatgattatcattattgttacttttacatgg
tatagtttgtccatatcagaatacttagagctaaagttgttaagatttca
gatctgctgggcagtggtgggtgcacacttatctcagcacttgggaggca
gaggcagcagatttctgagtcgaggcagtctggtcttaaggggtggttca
aggacattcaggctaacgagaaacctgtctgaaaaaaaaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126143706_126143991
seq2: B6Ng01-136F03.b_50_335 (reverse)

seq1  ACACACACACTGGATGGGAAAAACAAACATGTTTCAGGAGGAAAAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTGGATGGGAAAAACAAACATGTTTCAGGAGGAAAAATTAG  50

seq1  GAATTGGTTGTACTCATAATGACAGGAAGTGATGTGGCATGGACTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGTTGTACTCATAATGACAGGAAGTGATGTGGCATGGACTTAAGA  100

seq1  GAGGGACCAGTTAAAGGGGACAAGTGAAAGTGATGCTTAAAGTGGGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCAGTTAAAGGGGACAAGTGAAAGTGATGCTTAAAGTGGGCTTA  150

seq1  GTGAAGGCTTACTACAGTTGGAGACGACTAAGAAAAGGAATCAGGCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCTTACTACAGTTGGAGACGACTAAGAAAAGGAATCAGGCTCTT  200

seq1  GGTGAGCATCCTACAGATCTACCATTGCTCATTTGCAAATGGAAAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCATCCTACAGATCTACCATTGCTCATTTGCAAATGGAAAGACTC  250

seq1  TTGGTTTGACTCACTTCACTGGATCAACTCAGGGCT  286
      ||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGACTCACTTCACTGGATCAACTCAGGGCT  286

seq1: chr6_126015039_126016199
seq2: B6Ng01-136F03.g_70_1213

seq1  GAATTCTATTAAACTTTAAATGAATAATCTCTTATATAAGTTTTTTCTAT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTATACTTTAAATGAATAATCTCTTATATAAGTTTTTTCTAT  50

seq1  GTCAAAAATAAAGAAAAATAATTGGTCAACTTTTTAATGAGGTCGCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAATAAAGAAAAATAATTGGTCAACTTTTTAATGAGGTCGCTGTA  100

seq1  ATTGTAGCTTCAACATCATCAGTGTCAGTCCAGAGACTTCTTTCATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGCTTCAACATCATCAGTGTCAGTCCAGAGACTTCTTTCATTTCT  150

seq1  GAGTACATATGTTCAATTACCTCTCCAAAGTATTTGCTAATAAAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATATGTTCAATTACCTCTCCAAAGTATTTGCTAATAAAAATATT  200

seq1  TTTATCATTTTTAAAATACTCTTATGGGGGTGCACCAGGAGTGGAATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTTTTAAAATACTCTTATGGGGGTGCACCAGGAGTGGAATCAG  250

seq1  TACTTGGCAATCACTTGGGTAAATTAATAAATCAATACATAGATGGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGCAATCACTTGGGTAAATTAATAAATCAATACATAGATGGTAAA  300

seq1  GTGAATAGATTTTCTTGATAGATGAAAAAAATCATTGCATGATATGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGATTTTCTTGATAGATGAAAAAAATCATTGCATGATATGGAAA  350

seq1  AAGCATGAACAACTCTTAATAGAGTTCGTGAATAAGAAAAAACAGTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGAACAACTCTTAATAGAGTTCGTGAATAAGAAAAAACAGTAGCA  400

seq1  CTTTCCAGATAACAGTACCCTTGGCTTTCTGTTGCTGTAAAGAACCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGATAACAGTACCCTTGGCTTTCTGTTGCTGTAAAGAACCCTAC  450

seq1  GACCAAAACCAAACAAGGAGGAAAAGGTTTATTTCATCTAACAGTTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAACCAAACAAGGAGGAAAAGGTTTATTTCATCTAACAGTTGCAA  500

seq1  TCCACCATGAAGGGAAGTCAGGGCAGAAGCTCAAAGTTGGAGGAAGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATGAAGGGAAGTCAGGGCAGAAGCTCAAAGTTGGAGGAAGGTAC  550

seq1  AGAAACAGAAGTCATAGGGGGAACCTGCCTGGCTTAGATTGCTCAGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAAGTCATAGGGGGAACCTGCCTGGCTTAGATTGCTCAGCTTG  600

seq1  ATTTTTACATAGCCCAGGATCACTTGCCTAGGGATGGTGCCACCCACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACATAGCCCAGGATCACTTGCCTAGGGATGGTGCCACCCACAGT  650

seq1  GGGCTGGGGCTTTCTACATCAATTAGAAATTAAGAAAATGCCTGATAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGCTTTCTACATCAATTAGAAATTAAGAAAATGCCTGATAGGC  700

seq1  ATACCCACAGGTTAATCTGATTGAGGAAACTCCTCAACTGAGTTCCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACAGGTTAATCTGATTGAGGAAACTCCTCAACTGAGTTCCCCTC  750

seq1  TTTCCTAGTGACTCTAGGTTGTATCAGGTCCGTAGCTACAGCTGTGACAA  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCCTAGTGACTCTAGGTTGTATCACGTCCGTAGCTACAGCTGTGACAA  800

seq1  CTACAGATACAAATCTCTTTGCTTGATTAAAATATATGCAAAGATACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATACAAATCTCTTTGCTTGATTAAAATATATGCAAAGATACCAC  850

seq1  AACAAACACTATTTTCAAGAGGGAGAGAGACTTGAATTATATTTTGCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACTATTTTCAAGAGGGAGAGAGACTTGAATTATATTTTGCTTA  900

seq1  ATTACATCTCAATACAAAATATGATTATCATTATTGTTACTTTTAACATG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTACATCTCAATACAAAATATGATTATCATTATTGTTACTTTT-ACATG  949

seq1  GTATAGTTTGTCCATTATCAGAAATACTTAGAGCTAAAGTTGTTAAGATT  1000
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  GTATAGTTTGTCCA-TATCAG-AATACTTAGAGCTAAAGTTGTTAAGATT  997

seq1  TCAGATCTTGCTGGGCAGTGGT-GGTGCACACCTTTAATCTCAGCACTTG  1049
      ||||||| |||||||||||||| |||||||||   | |||||||||||||
seq2  TCAGATC-TGCTGGGCAGTGGTGGGTGCACAC---TTATCTCAGCACTTG  1043

seq1  GGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAG  1099
      ||||||||||||| ||||||||||||| |||||| |||||||||||  ||
seq2  GGAGGCAGAGGCA-GCAGATTTCTGAG-TCGAGG-CAGTCTGGTCTTAAG  1090

seq1  AGTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTTGAAAA  1149
       |   |||| ||||||| || ||||| || |||||| |||||||     |
seq2  GGGTGGTTCAAGGACATTCA-GGCTA-AC-GAGAAA-CCTGTCT----GA  1132

seq1  AAAAAAAAGATT  1161
      ||||||||||||
seq2  AAAAAAAAGATT  1144