BAC Information

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BAC

Clone NameB6Ng01-137I11
Chromosome6 (Build37)
Map Location 143,841,840 - 143,951,240
singlet/doubletdoublet
Overlap geneSox5
Upstream geneSt8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149, Bcat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137I11.bB6Ng01-137I11.g
ACCDH937025DH937026
length1,152997
definitionDH937025|Mus musculus domesticus DNA, BAC clone: B6Ng01-137I11, 5' end.DH937026|Mus musculus domesticus DNA, BAC clone: B6Ng01-137I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,950,067 - 143,951,240)(143,841,840 - 143,843,250)
sequence
gaattccagggcaactcaggctacaaacaatttcaggactagcctgggat
acatgagattatgtctccataactgattagagctagggtttattgtttag
ggtggggatagttaccaacataacatttcaattctgtccagtgctagttc
acgaatacatatacttcaggatattttggctaagaattttctatttagtt
gtgtttacatataataagtgttctgttgcaggctgtaaagtctatattaa
gccggagcataagtttccatgcagtgtgttgaactgctgagaacagagca
ggaagattttttccatttgttgttttggtttggttcaattttgggttttg
ttttgatggttatttttttttttgatatctttaacattccatatagacca
gactggccttgaactcagagaactccccctgcctctgaagttactggatt
aaaggcatgcacctgccatgacaggccttaatgttttaaaattaaaacat
tatactctttcaaagacaaaacatcagatacactgtactgttgatttagc
acctacctttggatatacatattcacacatagttatgttccttgcatata
gacacatgctgttcttgctatatattttaaagttttggtaagattatacc
caaaacaaagcataggataagtatggaaatatttcttgattgcactgtgt
ttgaaacataagaaatgaagactctccagcctcctgtataatgcgggttc
tcattttcattttctttaaagttggaaaataataagacttccatgggtta
tggctctctcttaaagtgatacagtaccactggggacacccacgtaaaga
tgacgggcaaagcagtgaagggaaaagtctaccttgaacgtagagtaatc
cttgccctccagagacatttgcattcatgactgaaggagagagaagtgtc
cactttctcattttctgtctctagacatcctgactactggctgtatatca
agtggattaattcacataagattgaacatgatgagcaaaatccctggcat
gcactgggcttctagatatgtacagagaaacttctcttcttctcatgtaa
gtgttgcggtggcaatatatcccatataagatgaatttctttataatgat
tt
gaattccataatctttctggatatggaatctttctccagagttcaaggat
atgataatttttcttaatcaaaattacattttgcctatgatatcttgaaa
tgctcctgcaatggtcagaggcactgagctctgaccacaaaatacttttt
caaaaagggtcagtgtaatgagagcaggcaagcattatgcctagtaagac
tacaaaatccccagaatcacagagggtcacaaggagctgctattgagagc
atcggtctgtgtgcggtgtgatcactctcaataagctaacccagttttta
tagaagtggtgtttggggtagaaagcattgcacaggtgtcaggatggaaa
gagtggaaggaagaatccagactctatgtatggtggaggaacaggggtaa
tgagcaaactgatataagacagggtgtgttaaaaggtggcacccacagag
cactggaagagaggcttgcaaagggcggacgaaggggctggctaccagag
tgccatggaaggcagcactgcgcctcctttggacatttctatctttgtgc
ttttattcttaaatccactcagagttcaagagagatcttactgtcaatca
tgcttcacccttcacagtctggggaggaggcagctcaagctctgcgggct
gctgtgttggcctcctgtatccccccacccccaccccagttagaaacttc
caatagtttatgctgtaatggaagagcactctgccgcccgtgttttaatg
gtgggttttcttgtgtgtttcccatcgcattacacagggcttggttatca
ctcttctttccttctgtttggttccagcatatcatagttcatctctcgaa
agcagtgctagaagccacagctacgagaaacacttcattgcatcgttttt
taaaaacttatattaggcaggggagaacatattgcttcttcaaggcaagc
tccgaaattagctgtggggcagattgaaagtgttctttctctctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143950067_143951240
seq2: B6Ng01-137I11.b_43_1194 (reverse)

seq1  AAATCAATTATAAAGAAAATACCTACTTTATTATGGGGTATATTATATGC  50
      ||||| |||||||||||| |  |  |||   |||||| |||||    |||
seq2  AAATC-ATTATAAAGAAATT--CATCTT--ATATGGGATATAT----TGC  41

seq1  --ACGCACACATATACATGGAGAAGAAGAGGAAGGTCTCTGTTACATTAA  98
         |||| |||  ||||| ||||||||||| |   |||||| |||||  |
seq2  CACCGCA-ACACTTACAT-GAGAAGAAGAGAAGTTTCTCTG-TACAT--A  86

seq1  TCTAGAAGCCCAGTGCATGCCAGGGAATTTTGCTCATCATGTTTTCAATC  148
      ||||||||||||||||||||||||| |||||||||||||||  |||||||
seq2  TCTAGAAGCCCAGTGCATGCCAGGG-ATTTTGCTCATCATG--TTCAATC  133

seq1  TTTATGTGATATTTAAAATCACTTGAATATACAGCCAGTAGGTCAGGATG  198
       |||||||| |||  ||  |||||| |||||||||||||| |||||||||
seq2  -TTATGTGA-ATT--AATCCACTTG-ATATACAGCCAGTA-GTCAGGATG  177

seq1  TCTAGAGACAGAAAATGAGGAAAGTGGACACTTCTCTCTTCCTTCAGTCA  248
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TCTAGAGACAGAAAATGA-GAAAGTGGACACTTCTCTC-TCCTTCAGTCA  225

seq1  TGAATGCAAATGTCTCTGGAGGGCAAGGATTACTCTACGTTCAAGGTAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCAAATGTCTCTGGAGGGCAAGGATTACTCTACGTTCAAGGTAGA  275

seq1  CTTTTCCCTTCACTGCTTTGCCCGTCATCTTTACGTGGGTGTCCCCAGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCTTCACTGCTTTGCCCGTCATCTTTACGTGGGTGTCCCCAGTG  325

seq1  GTACTGTATCACTTTAAGAGAGAGCCATAACCCATGGAAGTCTTATTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTATCACTTTAAGAGAGAGCCATAACCCATGGAAGTCTTATTATT  375

seq1  TTCCAACTTTAAAGAAAATGAAAATGAGAACCCGCATTATACAGGAGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTTTAAAGAAAATGAAAATGAGAACCCGCATTATACAGGAGGCT  425

seq1  GGAGAGTCTTCATTTCTTATGTTTCAAACACAGTGCAATCAAGAAATATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTCTTCATTTCTTATGTTTCAAACACAGTGCAATCAAGAAATATT  475

seq1  TCCATACTTATCCTATGCTTTGTTTTGGGTATAATCTTACCAAAACTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTTATCCTATGCTTTGTTTTGGGTATAATCTTACCAAAACTTTA  525

seq1  AAATATATAGCAAGAACAGCATGTGTCTATATGCAAGGAACATAACTATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAGCAAGAACAGCATGTGTCTATATGCAAGGAACATAACTATG  575

seq1  TGTGAATATGTATATCCAAAGGTAGGTGCTAAATCAACAGTACAGTGTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATATGTATATCCAAAGGTAGGTGCTAAATCAACAGTACAGTGTAT  625

seq1  CTGATGTTTTGTCTTTGAAAGAGTATAATGTTTTAATTTTAAAACATTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTTGTCTTTGAAAGAGTATAATGTTTTAATTTTAAAACATTAA  675

seq1  GGCCTGTCATGGCAGGTGCATGCCTTTAATCCAGTAACTTCAGAGGCAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTCATGGCAGGTGCATGCCTTTAATCCAGTAACTTCAGAGGCAGG  725

seq1  GGGAGTTCTCTGAGTTCAAGGCCAGTCTGGTCTATATGGAATGTTAAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCTCTGAGTTCAAGGCCAGTCTGGTCTATATGGAATGTTAAAGA  775

seq1  TATC-AAAAAAAAAATAACCATCAAAACAAAACCCAAAATTGAACCAAAC  847
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAAAAAAAATAACCATCAAAACAAAACCCAAAATTGAACCAAAC  825

seq1  CAAAACAACAAATGGAAAAAATCTTCCTGCTCTGTTCTCAGCAGTTCAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACAAATGGAAAAAATCTTCCTGCTCTGTTCTCAGCAGTTCAAC  875

seq1  ACACTGCATGGAAACTTATGCTCCGGCTTAATATAGACTTTACAGCCTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCATGGAAACTTATGCTCCGGCTTAATATAGACTTTACAGCCTGC  925

seq1  AACAGAACACTTATTATATGTAAACACAACTAAATAGAAAATTCTTAGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACACTTATTATATGTAAACACAACTAAATAGAAAATTCTTAGCC  975

seq1  AAAATATCCTGAAGTATATGTATTCGTGAACTAGCACTGGACAGAATTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCTGAAGTATATGTATTCGTGAACTAGCACTGGACAGAATTGA  1025

seq1  AATGTTATGTTGGTAACTATCCCCACCCTAAACAATAAACCCTAGCTCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATGTTGGTAACTATCCCCACCCTAAACAATAAACCCTAGCTCTA  1075

seq1  ATCAGTTATGGAGACATAATCTCATGTATCCCAGGCTAGTCCTGAAATTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTATGGAGACATAATCTCATGTATCCCAGGCTAGTCCTGAAATTG  1125

seq1  TTTGTAGCCTGAGTTGCCCTGGAATTC  1174
      |||||||||||||||||||||||||||
seq2  TTTGTAGCCTGAGTTGCCCTGGAATTC  1152

seq1: chr6_143841840_143843250
seq2: B6Ng01-137I11.g_67_1063

seq1  GAATTCCATAATCTTTCTGGATATGGAATCTTTCTCCAGAGTTCAAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATCTTTCTGGATATGGAATCTTTCTCCAGAGTTCAAGGAT  50

seq1  ATGATAATTTTTCTTAATCAAAATTACATTTTGCCTATGATATCTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATTTTTCTTAATCAAAATTACATTTTGCCTATGATATCTTGAAA  100

seq1  TGCTCCTGCAATGGTCAGAGGCACTGAGCTCTGACCACAAAATACTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGCAATGGTCAGAGGCACTGAGCTCTGACCACAAAATACTTTTT  150

seq1  CAAAAAGGGTCAGTGTAATGAGAGCAGGCAAGCATTATGCCTAGTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGGTCAGTGTAATGAGAGCAGGCAAGCATTATGCCTAGTAAGAC  200

seq1  TACAAAATCCCCAGAATCACAGAGGGTCACAAGGAGCTGCTATTGAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATCCCCAGAATCACAGAGGGTCACAAGGAGCTGCTATTGAGAGC  250

seq1  ATCGGTCTGTGTGCGGTGTGATCACTCTCAATAAGCTAACCCAGTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTCTGTGTGCGGTGTGATCACTCTCAATAAGCTAACCCAGTTTTTA  300

seq1  TAGAAGTGGTGTTTGGGGTAGAAAGCATTGCACAGGTGTCAGGATGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGGTGTTTGGGGTAGAAAGCATTGCACAGGTGTCAGGATGGAAA  350

seq1  GAGTGGAAGGAAGAATCCAGACTCTATGTATGGTGGAGGAACAGGGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAGGAAGAATCCAGACTCTATGTATGGTGGAGGAACAGGGGTAA  400

seq1  TGAGCAAACTGATATAAGACAGGGTGTGTTAAAAGGTGGCACCCACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAACTGATATAAGACAGGGTGTGTTAAAAGGTGGCACCCACAGAG  450

seq1  CACTGGAAGAGAGGCTTGCAAAGGGCGGACGAAGGGGCTGGCTACCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAGAGAGGCTTGCAAAGGGCGGACGAAGGGGCTGGCTACCAGAG  500

seq1  TGCCATGGAAGGCAGCACTGCGCCTCCTTTGGACATTTCTATCTTTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGAAGGCAGCACTGCGCCTCCTTTGGACATTTCTATCTTTGTGC  550

seq1  TTTTATTCTTAAATCCACTCAGAGTTCAAGAGAGATCTTACTGTCAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTAAATCCACTCAGAGTTCAAGAGAGATCTTACTGTCAATCA  600

seq1  TGCTTCACCCTTCACAGTCTGGGGAGGAGGCAGCTCAAGCTCTGCGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACCCTTCACAGTCTGGGGAGGAGGCAGCTCAAGCTCTGCGGGCT  650

seq1  GCTGTGTTGGCCTCCTGTATCCCCCCACCCCCACCCCAGTTAGAAACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTGGCCTCCTGTATCCCCCCACCCCCACCCCAGTTAGAAACTTC  700

seq1  CAATAGTTTATGCTGTAATGGAAGAGCACTCTGCCGCCCGTGTTTTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTTTATGCTGTAATGGAAGAGCACTCTGCCGCCCGTGTTTTAATG  750

seq1  GTGGGTTTTCTTGTGTGTTTCCCATCGCATTACACAGGGCTTGGTTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTTCTTGTGTGTTTCCCATCGCATTACACAGGGCTTGGTTATCA  800

seq1  CTCTTCTTTCCTTCTGTTTGGTTTCCAGCATATCATAGTTCATCTCCCGA  850
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  CTCTTCTTTCCTTCTGTTTGG-TTCCAGCATATCATAGTTCATCTCTCGA  849

seq1  AAGCAGTGCTAGAAGCCACAGCTACGAGAAACACTTCATTGCATCGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGCTAGAAGCCACAGCTACGAGAAACACTTCATTGCATCGTTTT  899

seq1  TTAAAAACTTATATTAGGCAGGGGAGAAACATATTGCTTCTTCCAGGCAA  950
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  TTAAAAACTTATATTAGGCAGGGGAG-AACATATTGCTTCTTCAAGGCAA  948

seq1  GCTCCGAAATTAGCTGTTGGGGGCAGATTGACAGTGTTCCTTTCCTCTCC  1000
      |||||||||||||||||  |||||||||||| ||||||| ||  |||| |
seq2  GCTCCGAAATTAGCTGT--GGGGCAGATTGAAAGTGTTCTTTCTCTCTGC  996

seq1  TGCTTGGCCCCGCCGTGCTGTCAACGAGTTCGGTGCTATTAACTGTGTGC  1050
      |                                                 
seq2  T-------------------------------------------------  997

seq1  CTTAAGTAGACCTGTGTTGTTTAATTGAGGCTCAGCAGCATTTTGAAGTC  1100
                                                        
seq2  --------------------------------------------------  997

seq1  ATGCTTTTATAAAATACTTCAATATTTCCCTTTGTCCACCCAAATTCTCA  1150
                                                        
seq2  --------------------------------------------------  997

seq1  ATGGCCTGCCTCAGACTGTAGAAAACAGTATGGTTATGCAAAGGCCGGGA  1200
                                                        
seq2  --------------------------------------------------  997

seq1  AAGTTCACAATTCGAATCGCTAAAAGCCATGCAATTGATTTAGGAAGAAA  1250
                                                        
seq2  --------------------------------------------------  997

seq1  GCGTCCCCATAGCGACATTCTCTCAAATCAGGTTGTATTAATAAATGTAA  1300
                                                        
seq2  --------------------------------------------------  997

seq1  CTTTTCAAAGTTTGATATGATGAAAATTCAAACCACACATGGTGGTAACT  1350
                                                        
seq2  --------------------------------------------------  997

seq1  AATGGCTCAGTTATTGCTACTACTGGAGTGTTAACACACATTTACTCCAG  1400
                                                        
seq2  --------------------------------------------------  997

seq1  GTCTCTCTGCT  1411
                 
seq2  -----------  997