BAC Information

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BAC

Clone NameB6Ng01-137M02
Chromosome6 (Build37)
Map Location 114,601,351 - 114,732,600
singlet/doubletdoublet
Overlap geneAtg7
Upstream geneIrak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
Downstream geneVgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137M02.bB6Ng01-137M02.g
ACCDH937187DH937188
length1,153995
definitionDH937187|Mus musculus domesticus DNA, BAC clone: B6Ng01-137M02, 5' end.DH937188|Mus musculus domesticus DNA, BAC clone: B6Ng01-137M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,731,443 - 114,732,600)(114,601,351 - 114,602,355)
sequence
gaattcactcactttccaccttctggctcacagaatccatcgtgaaaagc
ccctccaactcaaaatgcatccagttagtttaatgtattcatgatttaaa
gatatatacaactgccaatcaaagttgaggatccagtcagacaaagccag
atagataaaattcctgtctgacatgactgactcagtttaaaaaatatttt
taggttaatgtaatatcttgaagtctttatggtttaatgtcttttggtct
tgaatttcatggttgaaagaggactcaagtctcacaatttaaaaaggatt
gtgttcccatggtttaaggaggactagagcctctcttccattgctcagct
gtcttgtctgtgtgtcgcatgtgacttccccattctctctgccatggcct
ctaagtaggttgcgccactcagcctcctctctggaaggcaggattccacg
cagactttgctgtctacccttcagcaggactgtccctaatgcccacatat
ataaacatctcacatttctacagataactctgacagcaaataaaagggac
acactttacacagcgagttctcaatgggatgctgccaagctggatttcaa
aagacaggctccagtttccaaactaagcagcgattggctctgtgcctgca
gtttctgcctcccctcccctcactcaggagagagggccaaggctgacctg
gagggattgcttcataaggaaaattcagtgcagggcaccatcccaggaca
gaccggggagacgggctatcagaggactctgggaagacagggctaggtgc
ttgaacaagcccatgagttcccatagtgaactctctccactgcaaacagg
tctgagtgctgacacgggggtttcccacagcctcccctggcctccaaagg
cttatttgtcatcagaggctcttgatgaagctgtacataaatatctgact
gttgttaatacaaaacaaaacaaaaactatttccacagaaaccaaatcaa
accagctgtgagggcgaagggccagaacttggggtaagtgcaaaggccgg
gcagaaacacttgttacagccgtgctgactgagcagaacaggagtctttc
gtgccatgaagtcacccataaagcttgccatgtttctcgtgtgactcctg
ctg
gaattccagtgctcacaaggccaaggtgggaggaagttgaagcctgccta
agctatatagtgagactgtctcaaaaaataatattcataaattactgact
gtacggtgaagatgaggtgcagaagtgcttttggaaggtgcagtgtctgt
agaaagaatggcgaggctgagatgtgcacggggaaaggagatacctgggt
gaatgtcgggcaggaatgttccatgctgtgcaggagccactggaggatct
ggaattggtgtggaagcaaaacagcttcctttcttttttctttaattttg
aaatagcatcttactctagtataggctggcctcaaactcatgatcctctt
gcctcactgtccccagagctggggttgcaggtttgtgctgcactccccag
tttacccttctccttttgctctatcatagtgtgtaagtgtgtgtgtgcct
gtgtgtttgtgtacgggtatacacatgcaagtgcatgcatggaggtcaga
ggcagacaatcagtgtcttgcctgccattcttctccttattcctttgtac
caggacctttcactgaacttggagctagaatggcagccagcaagctccag
tccctccacagcatccgaggtgcaggcatgcattgctgttgctggttttt
tacataggaggtggggatgcaaactcagatgtttcatgattgctcattaa
gtgctgttacccactgaggcgctcactcagtcccagtgtagcttcctgat
ctagtatttgcctgccacctgccctattctcgggattagaagtgtgtggg
ctgttttattttactgtttacttttgaatgatatcaccaggatgtctctt
tccctttttctttaaatgagagcaacctgctatgttccacatttgtatgt
aaggccaaaaataaaaaagtatttccactcactggccagcccctgttgag
agtggcttttcagtttgtatacttggcgtaagggtccatgggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_114731443_114732600
seq2: B6Ng01-137M02.b_46_1198 (reverse)

seq1  CAGCAGAAGTCACAGGAGAAACATGGC-AGCTGTATGGTGTGACTTCATG  49
      |||||| ||||||| |||||||||||| |||| ||||| |||||||||||
seq2  CAGCAGGAGTCACACGAGAAACATGGCAAGCTTTATGG-GTGACTTCATG  49

seq1  GGCAGAAAGACTTCCTGTTCTGCTCAGTCAGCCACGCTGTTAACAAGTGT  99
      |   ||||||| ||||||||||||||||||||   |||| ||||||||||
seq2  GCACGAAAGAC-TCCTGTTCTGCTCAGTCAGCACGGCTG-TAACAAGTGT  97

seq1  TTCTGCCCGGCCTTTGCACTTACCCCAAGTTTCTGGCCCTTCGCCCTCAC  149
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCTGCCCGGCCTTTGCACTTACCCCAAG-TTCTGGCCCTTCGCCCTCAC  146

seq1  AGCTGGTTTTGATTTGGTTTCTGTGG-AATAGTTTTTTGTTTTGTTTTGT  198
      |||||| ||||||||||||||||||| ||||| |||||||||||||||||
seq2  AGCTGG-TTTGATTTGGTTTCTGTGGAAATAG-TTTTTGTTTTGTTTTGT  194

seq1  ATTTAACAACAGTCAGATATTTATGTACAGCTTCATCAAGAGCCTCTGAT  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTAACAACAGTCAGATATTTATGTACAGCTTCATCAAGAGCCTCTGAT  243

seq1  GACAAATAAGCCTTTGGAGGCCAGGGGAGGCTGTGGGAAACCCCCGTGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATAAGCCTTTGGAGGCCAGGGGAGGCTGTGGGAAACCCCCGTGTC  293

seq1  AGCACTCAGACCTGTTTGCAGTGGAGAGAGTTCACTATGGGAACTCATGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGACCTGTTTGCAGTGGAGAGAGTTCACTATGGGAACTCATGG  343

seq1  GCTTGTTCAAGCACCTAGCCCTGTCTTCCCAGAGTCCTCTGATAGCCCGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCAAGCACCTAGCCCTGTCTTCCCAGAGTCCTCTGATAGCCCGT  393

seq1  CTCCCCGGTCTGTCCTGGGATGGTGCCCTGCACTGAATTTTCCTTATGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCGGTCTGTCCTGGGATGGTGCCCTGCACTGAATTTTCCTTATGAA  443

seq1  GCAATCCCTCCAGGTCAGCCTTGGCCCTCTCTCCTGAGTGAGGGGAGGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCTCCAGGTCAGCCTTGGCCCTCTCTCCTGAGTGAGGGGAGGGG  493

seq1  AGGCAGAAACTGCAGGCACAGAGCCAATCGCTGCTTAGTTTGGAAACTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAACTGCAGGCACAGAGCCAATCGCTGCTTAGTTTGGAAACTGG  543

seq1  AGCCTGTCTTTTGAAATCCAGCTTGGCAGCATCCCATTGAGAACTCGCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCTTTTGAAATCCAGCTTGGCAGCATCCCATTGAGAACTCGCTG  593

seq1  TGTAAAGTGTGTCCCTTTTATTTGCTGTCAGAGTTATCTGTAGAAATGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTGTGTCCCTTTTATTTGCTGTCAGAGTTATCTGTAGAAATGTG  643

seq1  AGATGTTTATATATGTGGGCATTAGGGACAGTCCTGCTGAAGGGTAGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTATATATGTGGGCATTAGGGACAGTCCTGCTGAAGGGTAGACA  693

seq1  GCAAAGTCTGCGTGGAATCCTGCCTTCCAGAGAGGAGGCTGAGTGGCGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCTGCGTGGAATCCTGCCTTCCAGAGAGGAGGCTGAGTGGCGCA  743

seq1  ACCTACTTAGAGGCCATGGCAGAGAGAATGGGGAAGTCACATGCGACACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTAGAGGCCATGGCAGAGAGAATGGGGAAGTCACATGCGACACA  793

seq1  CAGACAAGACAGCTGAGCAATGGAAGAGAGGCTCTAGTCCTCCTTAAACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGACAGCTGAGCAATGGAAGAGAGGCTCTAGTCCTCCTTAAACC  843

seq1  ATGGGAACACAATCCTTTTTAAATTGTGAGACTTGAGTCCTCTTTCAACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAACACAATCCTTTTTAAATTGTGAGACTTGAGTCCTCTTTCAACC  893

seq1  ATGAAATTCAAGACCAAAAGACATTAAACCATAAAGACTTCAAGATATTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCAAGACCAAAAGACATTAAACCATAAAGACTTCAAGATATTA  943

seq1  CATTAACCTAAAAATATTTTTTAAACTGAGTCAGTCATGTCAGACAGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCTAAAAATATTTTTTAAACTGAGTCAGTCATGTCAGACAGGAA  993

seq1  TTTTATCTATCTGGCTTTGTCTGACTGGATCCTCAACTTTGATTGGCAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTATCTGGCTTTGTCTGACTGGATCCTCAACTTTGATTGGCAGT  1043

seq1  TGTATATATCTTTAAATCATGAATACATTAAACTAACTGGATGCATTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATCTTTAAATCATGAATACATTAAACTAACTGGATGCATTTTG  1093

seq1  AGTTGGAGGGGCTTTTCACGATGGATTCTGTGAGCCAGAAGGTGGAAAGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGGGGCTTTTCACGATGGATTCTGTGAGCCAGAAGGTGGAAAGT  1143

seq1  GAGTGAATTC  1158
      ||||||||||
seq2  GAGTGAATTC  1153

seq1: chr6_114601351_114602355
seq2: B6Ng01-137M02.g_71_1065

seq1  GAATTCCAGTGCTCACAAGGCCAAGGTGGGAGGAAGTTGAAGCCTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCTCACAAGGCCAAGGTGGGAGGAAGTTGAAGCCTGCCTA  50

seq1  AGCTATATAGTGAGACTGTCTCAAAAAATAATATTCATAAATTACTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATAGTGAGACTGTCTCAAAAAATAATATTCATAAATTACTGACT  100

seq1  GTACGGTGAAGATGAGGTGCAGAAGTGCTTTTGGAAGGTGCAGTGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGTGAAGATGAGGTGCAGAAGTGCTTTTGGAAGGTGCAGTGTCTGT  150

seq1  AGAAAGAATGGCGAGGCTGAGATGTGCACGGGGAAAGGAGATACCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATGGCGAGGCTGAGATGTGCACGGGGAAAGGAGATACCTGGGT  200

seq1  GAATGTCGGGCAGGAATGTTCCATGCTGTGCAGGAGCCACTGGAGGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCGGGCAGGAATGTTCCATGCTGTGCAGGAGCCACTGGAGGATCT  250

seq1  GGAATTGGTGTGGAAGCAAAACAGCTTCCTTTCTTTTTTCTTTAATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGTGTGGAAGCAAAACAGCTTCCTTTCTTTTTTCTTTAATTTTG  300

seq1  AAATAGCATCTTACTCTAGTATAGGCTGGCCTCAAACTCATGATCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCATCTTACTCTAGTATAGGCTGGCCTCAAACTCATGATCCTCTT  350

seq1  GCCTCACTGTCCCCAGAGCTGGGGTTGCAGGTTTGTGCTGCACTCCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTGTCCCCAGAGCTGGGGTTGCAGGTTTGTGCTGCACTCCCCAG  400

seq1  TTTACCCTTCTCCTTTTGCTCTATCATAGTGTGTAAGTGTGTGTGTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTTCTCCTTTTGCTCTATCATAGTGTGTAAGTGTGTGTGTGCCT  450

seq1  GTGTGTTTGTGTACGGGTATACACATGCAAGTGCATGCATGGAGGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGTGTACGGGTATACACATGCAAGTGCATGCATGGAGGTCAGA  500

seq1  GGCAGACAATCAGTGTCTTGCCTGCCATTCTTCTCCTTATTCCTTTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACAATCAGTGTCTTGCCTGCCATTCTTCTCCTTATTCCTTTGTAC  550

seq1  CAGGACCTTTCACTGAACTTGGAGCTAGAATGGCAGCCAGCAAGCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTTTCACTGAACTTGGAGCTAGAATGGCAGCCAGCAAGCTCCAG  600

seq1  TCCCTCCACAGCATCCGAGGTGCAGGCATGCATTGCTGTTGCTGGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCACAGCATCCGAGGTGCAGGCATGCATTGCTGTTGCTGGTTTTT  650

seq1  TACATAGGAGGTGGGGATGCAAACTCAGATG-TTCATGATTGCTCATTAA  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACATAGGAGGTGGGGATGCAAACTCAGATGTTTCATGATTGCTCATTAA  700

seq1  GTGCTGTTACCCACTGAGGCGCTCACTCAGTCCCAGTGTAGCTTCCTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTACCCACTGAGGCGCTCACTCAGTCCCAGTGTAGCTTCCTGAT  750

seq1  CTAGTATTTGCCTGCCACCTGCCCTATTCTCGGGATTTAGAAGTGTGTGG  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTAGTATTTGCCTGCCACCTGCCCTATTCTCGGGA-TTAGAAGTGTGTGG  799

seq1  GCTGTTTTATTTTACTGTTTTACTTTGTAATGATAACCACAGGATGTCTC  849
      ||||||||||||||||| ||||||||  ||||||| |  |||||||||||
seq2  GCTGTTTTATTTTACTG-TTTACTTTTGAATGATATCACCAGGATGTCTC  848

seq1  TTTCCCTTTTTCTTTTAATTGAGAGGGAACCAGCTATGTTCAACATTTTG  899
      |||||||||||| ||||| ||||| | |||| ||||||||| ||| ||||
seq2  TTTCCCTTTTTC-TTTAAATGAGA-GCAACCTGCTATGTTCCACA-TTTG  895

seq1  TAGTGTAAGGCTCAGAAGAAAAAAGTTATTCCACTCAGCCTGCCCTAGGC  949
      || ||||||||  | || ||||||||  |||||||||  ||| ||   ||
seq2  TA-TGTAAGGCCAAAAATAAAAAAGTATTTCCACTCA--CTGGCC--AGC  940

seq1  CCCTGTTGAGAGTGCTCTTCCAGTTTGTAAAAGCTTGGCTGAAGGGT-CA  998
      ||||||||||||||   || ||||||||| |  ||||||  |||||| ||
seq2  CCCTGTTGAGAGTGGCTTTTCAGTTTGTATA--CTTGGCGTAAGGGTCCA  988

seq1  TGGGAAA  1005
      |||||||
seq2  TGGGAAA  995