BAC Information

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BAC

Clone NameB6Ng01-138K18
Chromosome7 (Build37)6 (Build37)
Map Location 92,645,732 - 92,646,87985,609,685 - 85,610,201
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339
Downstream geneVmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138K18.bB6Ng01-138K18.g
ACCDH937867DH937868
length1,143998
definitionDH937867|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K18, 5' end.DH937868|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,645,732 - 92,646,879)(85,609,685 - 85,610,201)
sequence
gaattcagcaaaatatcacatgtctgctcatatgaccgctaacagaaaaa
catcatattatacaaataaagttattttaaagaaaccataaacttcaact
ccattttaccctctctgtttaaaaatatatatattttctctaaaattaag
gatcaacatacagccaggcagttgtggtgcaagcatttaatcccagcact
tgggaggaagaggcaggaggatttctgggttcaaggctagcctggtctaa
agagtgagtaccaggacagtcgggttacacagaaaaacgctgtcttgaaa
aaaccaaaaccaaaccaaccaaccaaacaaacaaacaaaaccgaattgat
atacaataaaaataaatttgaaaaatataaaaactcatattttatatcgc
aattaagcatgctctttatttacaacatattaaaagatattcaatcaact
ttatatatatatatacatatatatatcaaggtatagtaattaagaaaaaa
acactaaatttgtatcaataaaacatggtcaagcaaaacaaccattaaaa
tcaagatataaaagtatagaaaaccttaaatttctatcaatatataatag
ttaataaatatataataatttaaaaaataacctcaaatttttatcaatat
atattaatctatgccaaagtgaaatagacttaaattcatttaaaaaatct
atatctaagtctatatcatctatatctatatgtgtatgtatttatacata
tatgtagctctatatctatatagttacatatacatacatatatatttata
tataaaatatgtgtacatttaatacacacacatatgtgtatgtttctata
tatggctatttttatttcatgtttgctctttccccccataattattgaac
ctcgatctataatttacatattaatttgtttcctacaagaccataatcaa
taataagaatagcaaacatcctacacatagcagcctaacacccaaatgaa
caaaatgtccaccccaggtttatacgtatgggagtcaagctcttacaatt
atttttctggaagaataggatgtgggcaattcccggaaagcttatcttca
cctttttctggtctagtttcgtgtgtgcactctgtggtttcaa
gaattcctgatcttaccaagacttttatcatgaatgggtgttggatcttg
tcgaatgctttctctgcatctaaggagatgatcatgtgtttttgtttttg
aatttgtttatataatggattacattgatggatttctgtatattaaacca
tccctgcatccctggattaaaacctacttggtcaggatggatgattgttt
taatgtgttcttgtattcggttagtgagaattttattgagtatttttgca
ttgatattcataagggcaattggtctgaagttctctatctttttgaatct
ttctgtggtttaagtatcagagtcattgtggcttcagagaatgagttgga
tagagtaccttctactcctattttgtggaataatttgtgcagaactggaa
ttagatcttttttgaaggtatgatacaactctgcactaaacccatctggt
cctgggctttttttggttgggagactattaatgactgcttctatttcttt
aggggatatgggactttttagatcattaacttgatcctgatcctgattta
actttggtacctggtacctgtctagaaatgtgtccatttcatccaggttc
tccagttttgttgagtatagccttttgtagaaggatctgatggtgtattg
gatttcttcaggatctgttgttatgtctcccttttcatttctgattttgt
taattaggatgctgtccctgtgtcctctagagagtctagctaagggttta
tctatcttgttgtttttctcaaagaaccagctccttgtttggttgattct
ttgaatagttcttcttgtttcccctgattgatttgcctatgagtttgata
tttccaggcttgtactcctcttgggtgatttgctttcttttctagagcta
tagtgtgttttaagctgttaggttgtgtccctctagtttcttttggagac
actcacagctatggtttcctctgaaaatgcttcattgtgtcccataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_92645732_92646879
seq2: B6Ng01-138K18.b_44_1186 (reverse)

seq1  TTGAAAACACAGAGTGCACAACAGAGACACTAGA-CAGAAAAAGTTGAAG  49
      |||||| |||||||||||| |||  || |||||| ||||||||| |||||
seq2  TTGAAACCACAGAGTGCAC-ACA-CGAAACTAGACCAGAAAAAGGTGAAG  48

seq1  AT-AGCTTTCCCGGGATTTGGCCAACATCCTAATCTT-CAGAAAAATAAT  97
      || |||||||| || |||  ||| |||||||| |||| ||||||||||||
seq2  ATAAGCTTTCCGGGAATT--GCCCACATCCTATTCTTCCAGAAAAATAAT  96

seq1  TGTAAGAGCTTGACTCCCATACGTATAAACCTGGGGTGGACATTTTTGTT  147
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTAAGAGCTTGACTCCCATACGTATAAACCTGGGGTGGACA-TTTTGTT  145

seq1  CATTTGGGGTGTTAGGCTGCTATTGTGTAGGATGTTTGCTTATTCTTATT  197
      ||||| |||||||||||||||| |||||||||||||||| ||||||||||
seq2  CATTT-GGGTGTTAGGCTGCTA-TGTGTAGGATGTTTGC-TATTCTTATT  192

seq1  ATTGATTATGGTCTTGTAGGAAACAAATTAATATGTAAATTATAGATCGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTATGGTCTTGTAGGAAACAAATTAATATGTAAATTATAGATCGA  242

seq1  GGTTCAATAATTATGGGGGGAAAGAGCAAACATGAAATAAAAATAGCCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATAATTATGGGGGGAAAGAGCAAACATGAAATAAAAATAGCCAT  292

seq1  ATATAGAAACATACACATATGTGTGTGTATTAAATGTACACATATTTTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAACATACACATATGTGTGTGTATTAAATGTACACATATTTTAT  342

seq1  ATATAAATATATATGTATGTATATGTAACTATATAGATATAGAGCTACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATATATATGTATGTATATGTAACTATATAGATATAGAGCTACAT  392

seq1  ATATGTATAAATACATACACATATAGATATAGATGATATAGACTTAGATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATAAATACATACACATATAGATATAGATGATATAGACTTAGATA  442

seq1  TAGATTTTTTAAATGAATTTAAGTCTATTTCACTTTGGCATAGATTAATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTTAAATGAATTTAAGTCTATTTCACTTTGGCATAGATTAATA  492

seq1  TATATTGATAAAAATTTGAGGTTATTTTTTAAATTATTATATATTTATTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGATAAAAATTTGAGGTTATTTTTTAAATTATTATATATTTATTA  542

seq1  ACTATTATATATTGATAGAAATTTAAGGTTTTCTATACTTTTATATCTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATATATTGATAGAAATTTAAGGTTTTCTATACTTTTATATCTTG  592

seq1  ATTTTAATGGTTGTTTTGCTTGACCATGTTTTATTGATACAAATTTAGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGGTTGTTTTGCTTGACCATGTTTTATTGATACAAATTTAGTG  642

seq1  TTTTTTTCTTAATTACTATACCTTGATATATATATGTATATATATATATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTAATTACTATACCTTGATATATATATGTATATATATATATA  692

seq1  AAGTTGATTGAATATCTTTTAATATGTTGTAAATAAAGAGCATGCTTAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATTGAATATCTTTTAATATGTTGTAAATAAAGAGCATGCTTAAT  742

seq1  TGCGATATAAAATATGAGTTTTTATATTTTTCAAATTTATTTTTATTGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATATAAAATATGAGTTTTTATATTTTTCAAATTTATTTTTATTGTA  792

seq1  TATCAATTCGGTTTTGTTTGTTTGTTTGGTTGGTTGGTTTGGTTTTGGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTCGGTTTTGTTTGTTTGTTTGGTTGGTTGGTTTGGTTTTGGTT  842

seq1  TTTTCAAGACAGCGTTTTTCTGTGTAACCCGACTGTCCTGGTACTCACTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACAGCGTTTTTCTGTGTAACCCGACTGTCCTGGTACTCACTC  892

seq1  TTTAGACCAGGCTAGCCTTGAACCCAGAAATCCTCCTGCCTCTTCCTCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACCAGGCTAGCCTTGAACCCAGAAATCCTCCTGCCTCTTCCTCCC  942

seq1  AAGTGCTGGGATTAAATGCTTGCACCACAACTGCCTGGCTGTATGTTGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAATGCTTGCACCACAACTGCCTGGCTGTATGTTGAT  992

seq1  CCTTAATTTTAGAGAAAATATATATATTTTTAAACAGAGAGGGTAAAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTTTAGAGAAAATATATATATTTTTAAACAGAGAGGGTAAAATG  1042

seq1  GAGTTGAAGTTTATGGTTTCTTTAAAATAACTTTATTTGTATAATATGAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAGTTTATGGTTTCTTTAAAATAACTTTATTTGTATAATATGAT  1092

seq1  GTTTTTCTGTTAGCGGTCATATGAGCAGACATGTGATATTTTGCTGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTGTTAGCGGTCATATGAGCAGACATGTGATATTTTGCTGAATT  1142

seq1  C  1148
      |
seq2  C  1143

seq1: chr6_85609685_85610201
seq2: B6Ng01-138K18.g_557_1066 (reverse)

seq1  CTTATGGGACACAATGAAAGCATTCCTAAGAGGAAAACTCATAGCTCTGA  50
      |||||||||||||||| |||||||  | ||||||||   ||||||| |||
seq2  CTTATGGGACACAATG-AAGCATT-TTCAGAGGAAA--CCATAGCTGTGA  46

seq1  GTGCCTCCAAAAAGAAACTAGAGAGAGCACACATTAGCAGCTTGACAACA  100
      ||| |||| |||||||||||||| || ||||   || |||||| | ||||
seq2  GTGTCTCC-AAAAGAAACTAGAGGGA-CACAACCTAACAGCTT-AAAACA  93

seq1  CACCTAAAAGCTCTAGATCAAAAGGAAGCAAATTCACCCAAGAGGAGTAG  150
      |||   | ||||||||   ||||| ||||||| |||||||||||||||| 
seq2  CAC--TATAGCTCTAG---AAAAGAAAGCAAA-TCACCCAAGAGGAGTAC  137

seq1  ACGGCAGGAAATAATCAAACTCAGGGACGAAATCAACCAAGTGGAAAC--  198
      | | | |||||| ||||||||||  | | ||||||| | || ||||||  
seq2  AAGCCTGGAAAT-ATCAAACTCATAGGC-AAATCAATC-AGGGGAAACAA  184

seq1  -AAGAACTATTCAAAGAATCAACCAATCGAGGAGCTGGTTCTTTGAGAAA  247
       ||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  GAAGAACTATTCAAAGAATCAACCAAACAAGGAGCTGGTTCTTTGAGAAA  234

seq1  ATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGA  297
      | ||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  AACAACAAGATAGATAAACCCTTAGCTAGACTCTCTAGAGGACACAGGGA  284

seq1  AAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGATATAACAACAG  347
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAG  334

seq1  ATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATAC  397
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCCTGAAGAAATCCAATACACCATCAGATCCTTCTACAAAAGGCTATAC  384

seq1  TCATCAAAACTGGAGAACCTGGATGAAATGGACACGTTTCTAGACAGATA  447
      ||| ||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TCAACAAAACTGGAGAACCTGGATGAAATGGACACATTTCTAGACAGGTA  434

seq1  CCAGGTACCAAAGTTAAATCAAGATCAG------GTTAATGATCTAAACA  491
      ||||||||||||||||||||| ||||||      |||||||||||||| |
seq2  CCAGGTACCAAAGTTAAATCAGGATCAGGATCAAGTTAATGATCTAAAAA  484

seq1  GTCCTATATCCCCTAAAGAAATAGAA  517
      |||| |||||||||||||||||||||
seq2  GTCCCATATCCCCTAAAGAAATAGAA  510