BAC Information

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BAC

Clone NameB6Ng01-138N08
Chromosome6 (Build37)
Map Location 146,208,084 - 146,346,894
singlet/doubletdoublet
Overlap geneItpr2
Upstream geneLOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream gene4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138N08.bB6Ng01-138N08.g
ACCDH937978DH937979
length4591,050
definitionDH937978|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N08, 5' end.DH937979|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,208,084 - 146,208,548)(146,345,835 - 146,346,894)
sequence
acaggaaaggtccagcaaaattacaaagagctcaccccagctatttgaat
ggttcagatcagaagaaaattagaaaataattcacattaatctcatgaaa
taaaatatgaaaaactgaaacaaaattctggcagtgatcaagaacaaaaa
tatctggatatttacagacatccctgtgtgtacagacgcaacgtatgcgc
cactgaattccacaccacatgtagtttgtcccagaaatgcaaagatggct
caatatcagaagtattgtgaacatattaaccaaacatggagttcaaggca
acacactgcatgaaatagctgtaaaaagaaaaaccacatgatctcaatga
tgctctatagccatatagacagatttaatctgatttctgattacaacata
tacatgcaatatatataagacaggagagaaggagagagggggagggagag
agagagaga
gaattcattttggaggagaggctaccaggttggcctagaactcacagaga
tccccctgcttctgcgtctcaagtattgggaccccccccccccactctga
cttagtctccttctgccaccttcttcaccataatcagtgctgtctttaac
atcagagcttatggcagcctctgtctttgagagggaactccagttgggag
cggctgctcatggtcttaactccagatttggcaggctgaagcaggaaggc
tgctgtgagtctgaggccagcctgggctgcttagggagaccctgtctaaa
aagaaggaaggaaggagaaagggagggaagtgttttatgttgcacaagtt
cttcctttggttctttacaagagggtcacgtgcccctccatcccctgccc
ccccccccaaccttcctgcctctgttactggcagtcagtgctgtggtttc
acagtctggagcctccagagaaagctgctgctctgccattcacagttgac
tgaaactgcacgttctttttgtgggccaatgaatctacatcctttaactc
actttcttcctcccttcctcctttccttccttcctattgtctgtagtttg
tccatccgtccgtctgtctgtctgcctttggcttttccatgaatggcttt
ttgactagtcttcagccagcctggggtgcaggtctcttttgtgaggtggg
gattgcatttgtgcacttgaacgtgaccctgcatctttctcacatcatca
tgcccacaggagaatccccaggccatgtgttttcacaatactttacatcc
cacccacaggatacaagggtttccttgctctgacctttggcctttatctc
tggacttaggtcatcatgttcctagcctggaggctgtctgcttttgctgt
ggttttgattactccctccacacacacaataactggagcatgttttccta
tagtcactggtcattgtatgtcttcttgagtccgtggcatttaagaggtt
ctggtgacttaaatgggaggatcaatcctttagttgtaattggatacagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146208084_146208548
seq2: B6Ng01-138N08.b_43_507

seq1  GAATTCACAGGAAAGGTCCAGCAAAATTACAAAGAGCTCACCCCAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAAAGGTCCAGCAAAATTACAAAGAGCTCACCCCAGCTAT  50

seq1  TTGAATGGTTCAGATCAGAAGAAAATTAGAAAATAATTCACATTAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGGTTCAGATCAGAAGAAAATTAGAAAATAATTCACATTAATCTC  100

seq1  ATGAAATAAAATATGAAAAACTGAAACAAAATTCTGGCAGTGATCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAAATATGAAAAACTGAAACAAAATTCTGGCAGTGATCAAGAA  150

seq1  CAAAAATATCTGGATATTTACAGACATCCCTGTGTGTACAGACGCAACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATATCTGGATATTTACAGACATCCCTGTGTGTACAGACGCAACGT  200

seq1  ATGCGCCACTGAATTCCACACCACATGTAGTTTGTCCCAGAAATGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCACTGAATTCCACACCACATGTAGTTTGTCCCAGAAATGCAAAG  250

seq1  ATGGCTCAATATCAGAAGTATTGTGAACATATTAACCAAACATGGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAATATCAGAAGTATTGTGAACATATTAACCAAACATGGAGTTC  300

seq1  AAGGCAACACACTGCATGAAATAGCTGTAAAAAGAAAAACCACATGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACACACTGCATGAAATAGCTGTAAAAAGAAAAACCACATGATCT  350

seq1  CAATGATGCTCTATAGCCATATAGACAGATTTAATCTGATTTCTGATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGCTCTATAGCCATATAGACAGATTTAATCTGATTTCTGATTAC  400

seq1  AACATATACATGCAATATATATAAGACAGGAGAGAAGGAGAGAGGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATACATGCAATATATATAAGACAGGAGAGAAGGAGAGAGGGGGAG  450

seq1  GGAGAGAGAGAGAGA  465
      |||||||||||||||
seq2  GGAGAGAGAGAGAGA  465

seq1: chr6_146345835_146346894
seq2: B6Ng01-138N08.g_69_1118 (reverse)

seq1  GCTGTATACCAATTTACAACATAAGGATTTGATCCTCCACATTTAAGTCA  50
      ||||||| |||| |||||||  ||||| |||||||||| |||||||||||
seq2  GCTGTAT-CCAA-TTACAACTAAAGGA-TTGATCCTCC-CATTTAAGTCA  46

seq1  CCAGAACTCTC-TAAATGCCACGGACTCAAGAAGACATACAAATGACCAG  99
      ||||||| ||| |||||||||||||||||||||||||||| |||||||||
seq2  CCAGAAC-CTCTTAAATGCCACGGACTCAAGAAGACATAC-AATGACCAG  94

seq1  TGACTATAGGAAAACATGCT-CAGTTATGTGTGTGTGGGGGGGGGGAGGT  148
      |||||||||||||||||||| |||||||   |||||| | || |||||  
seq2  TGACTATAGGAAAACATGCTCCAGTTAT---TGTGTGTGTGGAGGGAG--  139

seq1  AAATCAAAACCACAGC-AAAGCAGACAGCCTCCCAGGCTAGGGACATGAT  197
       ||||||||||||||| |||||||||||||| |||||||||| |||||||
seq2  TAATCAAAACCACAGCAAAAGCAGACAGCCT-CCAGGCTAGGAACATGAT  188

seq1  GACCTAAGTCCAGAGATAAATGGCCAAAGGTCAGAGCAAGGGAACCCTTG  247
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  GACCTAAGTCCAGAGATAAA-GGCCAAAGGTCAGAGCAAGGAAACCCTTG  237

seq1  TATCCTGTGGGTGGGATGTAAAGTATTGTGAAAACACATGGCCTGGGGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTGGGTGGGATGTAAAGTATTGTGAAAACACATGGCCTGGGGAT  287

seq1  TCTTCCTGTGGGCATGATGATGTGAGAAAGATGCAGGGTCACGTTCAAGT  347
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TCCTGTGGGCATGATGATGTGAGAAAGATGCAGGGTCACGTTCAAGT  336

seq1  GCACAAATGCAATCCCCACCTCAC-AAAGAGACCTGCACCCCAGGCTGGC  396
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCACAAATGCAATCCCCACCTCACAAAAGAGACCTGCACCCCAGGCTGGC  386

seq1  TGAAGACTAGTCAAAAAGCCATTCATGGAAAAGCCAAAGGCAGACAGACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTAGTCAAAAAGCCATTCATGGAAAAGCCAAAGGCAGACAGACA  436

seq1  GACGGACGGATGGACAAACTACAGACAATAGGAAGGAAGGAAAGGAGGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGACGGATGGACAAACTACAGACAATAGGAAGGAAGGAAAGGAGGAA  486

seq1  GGGAGGAAGAAAGTGAGTTAAAGGATGTAGATTCATTGGCCCACAAAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAGAAAGTGAGTTAAAGGATGTAGATTCATTGGCCCACAAAAAG  536

seq1  AACGTGCAGTTTCAGTCAACTGTGAATGGCAGAGCAGCAGCTTTCTCTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCAGTTTCAGTCAACTGTGAATGGCAGAGCAGCAGCTTTCTCTGG  586

seq1  AGGCTCCAGACTGTGAAACCACAGCACTGACTGCCAGTAACAGAGGCAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAGACTGTGAAACCACAGCACTGACTGCCAGTAACAGAGGCAGG  636

seq1  AAGGTTGGGGGGGGGGGCAGGGGATGGAGGGGCACGTGACCCTCTTGTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGGGGGGGGGGGCAGGGGATGGAGGGGCACGTGACCCTCTTGTAA  686

seq1  AGAACCAAAGGAAGAACTTGTGCAACATAAAACACTTCCCTCCCTTTCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAAGGAAGAACTTGTGCAACATAAAACACTTCCCTCCCTTTCTC  736

seq1  CTTCCTTCCTTCTTTTTAGACAGGGTCTCCCTAAGCAGCCCAGGCTGGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCTTTTTAGACAGGGTCTCCCTAAGCAGCCCAGGCTGGCC  786

seq1  TCAGACTCACAGCAGCCTTCCTGCTTCAGCCTGCCAAATCTGGAGTTAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCACAGCAGCCTTCCTGCTTCAGCCTGCCAAATCTGGAGTTAAG  836

seq1  ACCATGAGCAGCCGCTCCCAACTGGAGTTCCCTCTCAAAGACAGAGGCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGCAGCCGCTCCCAACTGGAGTTCCCTCTCAAAGACAGAGGCTG  886

seq1  CCATAAGCTCTGATGTTAAAGACAGCACTGATTATGGTGAAGAAGGTGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCTCTGATGTTAAAGACAGCACTGATTATGGTGAAGAAGGTGGC  936

seq1  AGAAGGAGACTAAGTCAGAGTGGGGGGGGGGGGTCCCAATACTTGAGACG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGACTAAGTCAGAGTGGGGGGGGGGGGTCCCAATACTTGAGACG  986

seq1  CAGAAGCAGGGGGATCTCTGTGAGTTCTAGGCCAACCTGGTAGCCTCTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAGGGGGATCTCTGTGAGTTCTAGGCCAACCTGGTAGCCTCTCC  1036

seq1  TCCAAAATGAATTC  1060
      ||||||||||||||
seq2  TCCAAAATGAATTC  1050