BAC Information

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BAC

Clone NameB6Ng01-139K23
Chromosome6 (Build37)
Map Location 108,248,853 - 108,425,957
singlet/doubletdoublet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K23.bB6Ng01-139K23.g
ACCDH938608DH938609
length507448
definitionDH938608|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K23, 5' end.DH938609|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,248,853 - 108,249,365)(108,425,504 - 108,425,957)
sequence
agaaaagggagcaaggtgggagcatggaaggggttgagggaggaaaggga
aagtgatgtaattatatttgaattaaaaataaaaaaataaaatttatctc
cagggtataatagtagtaataataataataacaaaaacaacaacaataat
aattgaagaaaacatctcagtgtcacctctgacctcagcattctgctaca
tgggtgagcacacctgcacatatctgtgtatgcaacacacacagacaaca
cagagtgctggttgggtttatagtctagggtgttacagaatgttttaatt
gctcatattttgtcttgatataaataatattatactaggtagaggctagc
atgtagaaactgaagttctttgctgaaatgcaaggaacaattgtatctac
aaatagaggattggtggatgaacactgagacccttggcatcacccaggca
ggactgagagtgactcgggggcaagtgagaaaaaaaaccctgctggtcat
aagtcaa
cagcaagaaatcatgtagtttgtgcagttagctaatcgagcagttagggc
ctagctctattttcctactctagaaacatggagatggggggtcggggagt
ggcggggagaggaagagaaaggcagggcaagtccatgaaaccagaaggca
accttggttggttagatgggaactcagcaagtattagctgtttggacctt
tacagcacttagcatgttgtattgcaatctctcgttggtcccagtcctcc
tgctccatacactgggatctgagggatgagtgagggctgatcaccgttag
tgctgggtcctgcttatgtgttttccagtgtacatgacaggaattgatgc
cacctatttcttttggggagcctgaagttggtgggggtcagtgacaccac
atggaagaacaaacagtacagaacaccaatctctatgctttgcagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108248853_108249365
seq2: B6Ng01-139K23.b_47_559

seq1  GAATTCAGAAAAGGGAGCAAGGTGGGAGCATGGAAGGGGTTGAGGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAAGGGAGCAAGGTGGGAGCATGGAAGGGGTTGAGGGAGGA  50

seq1  AAGGGAAAGTGATGTAATTATATTTGAATTAAAAATAAAAAAATAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAGTGATGTAATTATATTTGAATTAAAAATAAAAAAATAAAATT  100

seq1  TATCTCCAGGGTATAATAGTAGTAATAATAATAATAACAAAAACAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAGGGTATAATAGTAGTAATAATAATAATAACAAAAACAACAAC  150

seq1  AATAATAATTGAAGAAAACATCTCAGTGTCACCTCTGACCTCAGCATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATTGAAGAAAACATCTCAGTGTCACCTCTGACCTCAGCATTCT  200

seq1  GCTACATGGGTGAGCACACCTGCACATATCTGTGTATGCAACACACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGGGTGAGCACACCTGCACATATCTGTGTATGCAACACACACAG  250

seq1  ACAACACAGAGTGCTGGTTGGGTTTATAGTCTAGGGTGTTACAGAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAGAGTGCTGGTTGGGTTTATAGTCTAGGGTGTTACAGAATGTT  300

seq1  TTAATTGCTCATATTTTGTCTTGATATAAATAATATTATACTAGGTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCTCATATTTTGTCTTGATATAAATAATATTATACTAGGTAGAG  350

seq1  GCTAGCATGTAGAAACTGAAGTTCTTTGCTGAAATGCAAGGAACAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATGTAGAAACTGAAGTTCTTTGCTGAAATGCAAGGAACAATTGT  400

seq1  ATCTACAAATAGAGGATTGGTGGATGAACACTGAGACCCTTGGCATCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAATAGAGGATTGGTGGATGAACACTGAGACCCTTGGCATCACC  450

seq1  CAGGCAGGACTGAGAGTGACTCGGGGGCAAGTGAGAAAAAAAACCCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGACTGAGAGTGACTCGGGGGCAAGTGAGAAAAAAAACCCTGCT  500

seq1  GGTCATAAGTCAA  513
      |||||||||||||
seq2  GGTCATAAGTCAA  513

seq1: chr6_108425504_108425957
seq2: B6Ng01-139K23.g_66_519 (reverse)

seq1  GTGCTGCAAAGCATAGAGATTGGTGTTCTGTACTGTTTGTTCTTCCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCAAAGCATAGAGATTGGTGTTCTGTACTGTTTGTTCTTCCATGT  50

seq1  GGTGTCACTGACCACCACCAACTTCAGGCTCCCCAAAAGAAATAGGTGGC  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACTGACCCCCACCAACTTCAGGCTCCCCAAAAGAAATAGGTGGC  100

seq1  ATCAATTCCTGTCATGTACACTGGAAAACACATAAGCAGGACCCAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTCCTGTCATGTACACTGGAAAACACATAAGCAGGACCCAGCACT  150

seq1  AACGGTGATCAGCCCTCACTCATCCCTCAGATCCCAGTGTATGGAGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTGATCAGCCCTCACTCATCCCTCAGATCCCAGTGTATGGAGCAGG  200

seq1  AGGACTGGGACCAACGAGAGATTGCAATACAACATGCTAAGTGCTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGGACCAACGAGAGATTGCAATACAACATGCTAAGTGCTGTAAA  250

seq1  GGTCCAAACAGCTAATACTTGCTGAGTTCCCATCTAACCAACCAAGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAACAGCTAATACTTGCTGAGTTCCCATCTAACCAACCAAGGTTG  300

seq1  CCTTCTGGTTTCATGGACTTGCCCTGCCTTTCTCTTCCTCTCCCCGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGTTTCATGGACTTGCCCTGCCTTTCTCTTCCTCTCCCCGCCAC  350

seq1  TCCCCGACCCCCCATCTCCATGTTTCTAGAGTAGGAAAATAGAGCTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGACCCCCCATCTCCATGTTTCTAGAGTAGGAAAATAGAGCTAGGC  400

seq1  CCTAACTGCTCGATTAGCTAACTGCACAAACTACATGATTTCTTGCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGCTCGATTAGCTAACTGCACAAACTACATGATTTCTTGCTGGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454