BAC Information

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BAC

Clone NameB6Ng01-140B04
Chromosome6 (Build37)
Map Location 12,760,614 - 12,897,717
singlet/doubletdoublet
Overlap geneLOC667735
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140B04.bB6Ng01-140B04.g
ACCDH938897DH938898
length1,1761,042
definitionDH938897|Mus musculus domesticus DNA, BAC clone: B6Ng01-140B04, 5' end.DH938898|Mus musculus domesticus DNA, BAC clone: B6Ng01-140B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,760,614 - 12,761,792)(12,896,667 - 12,897,717)
sequence
gaattcaatgtctgaaatagatgtttttattacactaataaattgtaccc
aaacatttcatgataaatggtattattcccacttttaaatataaatcttt
aagaaaaagccaagacattatttacaaagattactagctttgaaagtact
tagtacaagccaagaagaattattttaactaccccaaaaccatcagtgct
gacgcattcaaagccaactgccatgtaaatttctaccttaaatttcaggt
aattatttttctgttcacacatcttcagaagagtttaatttgaaaatgac
tgaccctttattatcagttgcataaattaaacattagtcatctgttaaaa
atcatatttctacctttcaatgaaaatattttattagctggtaaaatttt
tctatttccctggaataaaggacagaagaaattcccattgttcaagtgga
caggggtgtaagctagaaacctcatctgtcactggattgcccttgagcca
cgcagttttatgatatttctaaagagtctgtttgcacctgaaaatgttct
tccatttaacaaatgcacttttgaagtagacactttttgccttttctatt
cttagacaaagaaaaaggagacagaaagaaaagatatatattttttactg
cctttctttgttttccacaagcacattcaataaactgtcctgtcaagagt
aagagcgaagggctcaattcaataaaaaattgcagtgattatgctatgca
attttgctctcactactttatcacaatttaccattcaagtagacaatgct
cttcttccagccctagaaggggaaaggccccatctactatggcaaggtcg
ttctctattcaaagacaccagacctatttgacagcttgtcttatatcaga
tatccagcagtctttgtgtcataaactaagtcatgattttttgttacaca
aagtagccaaatgaatcattatcacataagaattatttacctagacaata
tcagatcagcgattataattgcctgaaacataacaagaatacagtatttt
aaggtcttcagaggtatgttaactgattacttctacctggagtgcgtccc
tcttcaggtcattcaatagaggtaaaaaagcagaagggtctcactttaga
ggataatccagtttgttttgcatgtg
gaattccattgttttttaaagtctcagggttcaaaacagtcctagtcttt
agagatctttgcattttattctaaatgagcatattcatcctttagtctct
cctagagaaaaccatttcactaaaaatatgatataaatttataatatttt
atctgaatcaatcttttttcctttttattactgtagttagatattttctt
tggtaataatcttgaattgatttacaactgaaccatgatatctttaaaac
ttgcatttttatatgatggtgattaaatttaaataaatattcatactcta
tcatcttttcactctgtattatggagagctcttcaatacatattgacaag
ttaagattccagtgttaaagactgcgtattgtatgtcaccatgcatatcc
aataatatggcaatttataaaaggcatttaatgtacgttatattagtaaa
ttgtcacgtgctgtttaagaccatctagaagatagctttagaggtggagt
tgacctcactacttcagacccaagcttgtttatcttagactgtgctccta
gtcccattgtccaaaacaggttacctgccttccaccccagtcccagtcaa
aagagaaaggagaacagataaacagacaagaattgaaaatatcatttact
tgagaacagagaagtaaatcatttaagtgaaatttctgtgtccataaata
ggtaagccattcctaagcacctccccaaagcaaggctcacccactgtttc
tcccaaggtatgaacaagtctctagtgaaacaacctggtctcacccacaa
tgtctattctgcctggaaccctctttacccatctggttcctgctggagtt
tggaatttgtgtggaatgacatgtatccgaactaattcttgctcatttgt
tattttatttctgtggctatatatttataatctcactccttaaaacttaa
acacggaccattcttcatattaagcaagacagaatttaagaaataaaaaa
ttgccacaaaagaaagaataagagctcagagacgtttaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12760614_12761792
seq2: B6Ng01-140B04.b_46_1221

seq1  GAATTCAATGTCTGAAATAGATGTTTTTATTACACTAATAAATTGTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCTGAAATAGATGTTTTTATTACACTAATAAATTGTACCC  50

seq1  AAACATTTCATGATAAATGGTATTATTCCCACTTTTAAATATAAATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCATGATAAATGGTATTATTCCCACTTTTAAATATAAATCTTT  100

seq1  AAGAAAAAGCCAAGACATTATTTACAAAGATTACTAGCTTTGAAAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGCCAAGACATTATTTACAAAGATTACTAGCTTTGAAAGTACT  150

seq1  TAGTACAAGCCAAGAAGAATTATTTTAACTACCCCAAAACCATCAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAAGCCAAGAAGAATTATTTTAACTACCCCAAAACCATCAGTGCT  200

seq1  GACGCATTCAAAGCCAACTGCCATGTAAATTTCTACCTTAAATTTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCATTCAAAGCCAACTGCCATGTAAATTTCTACCTTAAATTTCAGGT  250

seq1  AATTATTTTTCTGTTCACACATCTTCAGAAGAGTTTAATTTGAAAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTCTGTTCACACATCTTCAGAAGAGTTTAATTTGAAAATGAC  300

seq1  TGACCCTTTATTATCAGTTGCATAAATTAAACATTAGTCATCTGTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTTATTATCAGTTGCATAAATTAAACATTAGTCATCTGTTAAAA  350

seq1  ATCATATTTCTACCTTTCAATGAAAATATTTTATTAGCTGGTAAAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTTCTACCTTTCAATGAAAATATTTTATTAGCTGGTAAAATTTT  400

seq1  TCTATTTCCCTGGAATAAAGGACAGAAGAAATTCCCATTGTTCAAGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCCCTGGAATAAAGGACAGAAGAAATTCCCATTGTTCAAGTGGA  450

seq1  CAGGGGTGTAAGCTAGAAACCTCATCTGTCACTGGATTGCCCTTGAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGTAAGCTAGAAACCTCATCTGTCACTGGATTGCCCTTGAGCCA  500

seq1  CGCAGTTTTATGATATTTCTAAAGAGTCTGTTTGCACCTGAAAATGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTTTATGATATTTCTAAAGAGTCTGTTTGCACCTGAAAATGTTCT  550

seq1  TCCATTTAACAAATGCACTTTTGAAGTAGACACTTTTTGCCTTTTCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTAACAAATGCACTTTTGAAGTAGACACTTTTTGCCTTTTCTATT  600

seq1  CTTAGACAAAGAAAAAGGAGACAGAAAGAAAAGATATATATTTTTTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACAAAGAAAAAGGAGACAGAAAGAAAAGATATATATTTTTTACTG  650

seq1  CCTTTCTTTGTTTTCCACAAGCACATTCAATAAACTGTCCTGTCAAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTGTTTTCCACAAGCACATTCAATAAACTGTCCTGTCAAGAGT  700

seq1  AAGAGCGAAGGGCTCAATTCAATAAAAAATTGCAGTGATTATGCTATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGAAGGGCTCAATTCAATAAAAAATTGCAGTGATTATGCTATGCA  750

seq1  ATTTTGCTCTCACTACTTTATCACAATTTACCATTCAAGTAGACAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCTCACTACTTTATCACAATTTACCATTCAAGTAGACAATGCT  800

seq1  CTTCTTCCAGCCCTAGAAGGGGAAAGGCCCCATCTACTATGGCAAGGTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCAGCCCTAGAAGGGGAAAGGCCCCATCTACTATGGCAAGGTCG  850

seq1  TTCTCTATTCAAAGACACCAGACCTATTTGACAGCTTGTCTTATATCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATTCAAAGACACCAGACCTATTTGACAGCTTGTCTTATATCAGA  900

seq1  TATCCAGCAGTCTTTGTGTCATAAACTAAGTCATGATTTTTTGTTACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGCAGTCTTTGTGTCATAAACTAAGTCATGATTTTTTGTTACACA  950

seq1  AAGTAGCCAAATGAATCATTATCACATAAGAATTATTTACCTAGACAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCAAATGAATCATTATCACATAAGAATTATTTACCTAGACAATA  1000

seq1  TCAGGATCAGCGATTATAATTGCCTGAAACATAACAAG-ATACAGTA-TT  1048
      ||| |||||||||||||||||||||||||||||||||| |||||||| ||
seq2  TCA-GATCAGCGATTATAATTGCCTGAAACATAACAAGAATACAGTATTT  1049

seq1  TCAGGTC-TCAGAGGTATGTTTAACTGATTACTTCTACCCTGAGTGCTGC  1097
      | ||||| ||||||||||| |||||||||||||||||||  |||||| | 
seq2  TAAGGTCTTCAGAGGTATG-TTAACTGATTACTTCTACCTGGAGTGC-GT  1097

seq1  CCCTCTTCAAGGTCATTCAATAGGATGTAAAAGAGCAGGAAGGGTCTCAC  1147
      |||||||| ||||||||||||| || |||||| |||| ||||||||||||
seq2  CCCTCTTC-AGGTCATTCAATA-GAGGTAAAAAAGCA-GAAGGGTCTCAC  1144

seq1  TTTAGAGGATAATCCAGTTAGTTTGCCATGTG  1179
      ||||||||||||||||||| ||||  ||||||
seq2  TTTAGAGGATAATCCAGTTTGTTTTGCATGTG  1176

seq1: chr6_12896667_12897717
seq2: B6Ng01-140B04.g_68_1109 (reverse)

seq1  TGCCTTAAACGTCCTCTGAGCTTCTTTATTCTTTCTTTTGTGGCAATTTT  50
      |||| ||||||| |||||||||   ||||||||||||||||||||| |||
seq2  TGCC-TAAACGT-CTCTGAGCT--CTTATTCTTTCTTTTGTGGCAA-TTT  45

seq1  TTTATTTCTTTAAATTCTGTCTTGCTTAATATGAAGAATGGTCCGTGGTT  100
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TTTATTTC-TTAAATTCTGTCTTGCTTAATATGAAGAATGGTCCGT-GTT  93

seq1  TAAGTTTTAAAGGAGTGAGATTATTAAATATATAGCCACAGAAATAAAAT  150
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TAAGTTTT-AAGGAGTGAGATTA-TAAATATATAGCCACAGAAATAAAAT  141

seq1  AACAAATGAGCAAGAATTAGTTCGGATACATGTCATTCCACACAAATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGAGCAAGAATTAGTTCGGATACATGTCATTCCACACAAATTCC  191

seq1  AAACTCCAGCAGGAACCAGATGGGTAAAGAGGGTTCCAGGCAGAATAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAGCAGGAACCAGATGGGTAAAGAGGGTTCCAGGCAGAATAGAC  241

seq1  ATTGTGGGTGAGACCAGGTTGTTTCACTAGAGACTTGTTCATACCTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGTGAGACCAGGTTGTTTCACTAGAGACTTGTTCATACCTTGGG  291

seq1  AGAAACAGTGGGTGAGCCTTGCTTTGGGGAGGTGCTTAGGAATGGCTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGTGGGTGAGCCTTGCTTTGGGGAGGTGCTTAGGAATGGCTTAC  341

seq1  CTATTTATGGACACAGAAATTTCACTTAAATGATTTACTTCTCTGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATGGACACAGAAATTTCACTTAAATGATTTACTTCTCTGTTCTC  391

seq1  AAGTAAATGATATTTTCAATTCTTGTCTGTTTATCTGTTCTCCTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGATATTTTCAATTCTTGTCTGTTTATCTGTTCTCCTTTCTCT  441

seq1  TTTGACTGGGACTGGGGTGGAAGGCAGGTAACCTGTTTTGGACAATGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGGGACTGGGGTGGAAGGCAGGTAACCTGTTTTGGACAATGGGA  491

seq1  CTAGGAGCACAGTCTAAGATAAACAAGCTTGGGTCTGAAGTAGTGAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCACAGTCTAAGATAAACAAGCTTGGGTCTGAAGTAGTGAGGTC  541

seq1  AACTCCACCTCTAAAGCTATCTTCTAGATGGTCTTAAACAGCACGTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCACCTCTAAAGCTATCTTCTAGATGGTCTTAAACAGCACGTGACA  591

seq1  ATTTACTAATATAACGTACATTAAATGCCTTTTATAAATTGCCATATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAATATAACGTACATTAAATGCCTTTTATAAATTGCCATATTAT  641

seq1  TGGATATGCATGGTGACATACAATACGCAGTCTTTAACACTGGAATCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGCATGGTGACATACAATACGCAGTCTTTAACACTGGAATCTTA  691

seq1  ACTTGTCAATATGTATTGAAGAGCTCTCCATAATACAGAGTGAAAAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCAATATGTATTGAAGAGCTCTCCATAATACAGAGTGAAAAGATG  741

seq1  ATAGAGTATGAATATTTATTTAAATTTAATCACCATCATATAAAAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTATGAATATTTATTTAAATTTAATCACCATCATATAAAAATGCA  791

seq1  AGTTTTAAAGATATCATGGTTCAGTTGTAAATCAATTCAAGATTATTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAGATATCATGGTTCAGTTGTAAATCAATTCAAGATTATTACC  841

seq1  AAAGAAAATATCTAACTACAGTAATAAAAAGGAAAAAAGATTGATTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATATCTAACTACAGTAATAAAAAGGAAAAAAGATTGATTCAGA  891

seq1  TAAAATATTATAAATTTATATCATATTTTTAGTGAAATGGTTTTCTCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTATAAATTTATATCATATTTTTAGTGAAATGGTTTTCTCTAG  941

seq1  GAGAGACTAAAGGATGAATATGCTCATTTAGAATAAAATGCAAAGATCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTAAAGGATGAATATGCTCATTTAGAATAAAATGCAAAGATCTC  991

seq1  TAAAGACTAGGACTGTTTTGAACCCTGAGACTTTAAAAAACAATGGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTAGGACTGTTTTGAACCCTGAGACTTTAAAAAACAATGGAATT  1041

seq1  C  1051
      |
seq2  C  1042