BAC Information

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BAC

Clone NameB6Ng01-140N03
Chromosome6 (Build37)
Map Location 33,792,623 - 33,915,617
singlet/doubletdoublet
Overlap geneExoc4
Upstream geneChchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140N03.bB6Ng01-140N03.g
ACCDH939445DH939446
length1,112513
definitionDH939445|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N03, 5' end.DH939446|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,914,488 - 33,915,617)(33,792,623 - 33,793,141)
sequence
gaattccactgatgccagtccatcagtcctaacagggatgagtccatccc
tgtagctgctgagatgatggcagcgttcctgttacagtcactgagagtgg
agagaatgtctccccatgctcttagttggtaactctgtcctcattccact
tttggaatacattctaaatttaaaaatatctaaggttgaaattctcactc
caacaattaaggatttatatgtcactctccactctatcagataattttta
aaattaaggtttctgcaagaggactagaggccaatttgtattttacattc
agtacaattaaaactgtgtctctttggtctagtcctgcctttggtcggag
cctgtttatatgaataattatttactacattacgaagtcagctcaagtcc
ttctcccattctgaaggttttaataaatattgatcaggaccattttttgt
ttgcacttgccaaagcaattctgatggattcatcatctgatgttatcaaa
taatgaaatatgaaagagtgaatagaattaccctcttgttctgtgatttt
ttatttaggccttcattttactttcataattgtgtttgtctcatacttct
gtaaatgttcttttgattaccaaaaggtgagcctgggttaagaagagcta
tgcggtgctgaatagcagtttagagtcttttcaattaaaatagtttatcg
gatagcactttggagagttttcaattttaaaaaataatttatctgatatc
acagggtgaaaaaaggcacatcgtatattgccctctggcagtaacaaagc
ctcagattgtttactaattagtaagaaaatcttaaattatatattatcta
tatttcacatactagaaatctggaggcaagtgctggtgtaaactgaaaat
aatttagaggccctgtggccctttcatctttaagtaaagtaaaggaaaca
taacttttcatagatatgccagtgctgcttcagagggagacttgaccttg
tacatgctgagcatcaggaataccacagttgacaacttcgtgtggagcat
gctccttagcctcaggggtctcggtattggctcttagaaatacatccgtt
aggcctagtcaa
actctgtaactagttctttccttttaacccgtcccattctttttctagat
tagatgttgaaaccatgtaagtagaagagagacctttcactgatactcca
gcaaaccagagttgacagagggccggatttagcacattgagtaccatata
gcactgtatgagccaaaaagactgcaaagttactctcctcctataattag
tttttaaagctcagaagactatttggtgaacagatgaatatagaatccag
tgtcctttgcattgagtaaaagctatgctctcttcattattaaatgaggc
ctttttctcttcttgtgttttaactgaaaaaaaaaaaaaaaaagatgtat
tatttcccagttcagcattgaatagatggaggaaaaaaaaactaggtcaa
gctagggctttaatagaacccttttgttcccaaagagctaaaagcaggct
ctcaagcccattgtctttgcgcctgtcatggtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33914488_33915617
seq2: B6Ng01-140N03.b_46_1157 (reverse)

seq1  TTGACCTAGGCCTAGACGTGATGTTATTTCTAAAGAGCAAATA-CGAGAA  49
      |||| ||||||||| ||| |||| ||||||| |||||| |||| ||||| 
seq2  TTGA-CTAGGCCTA-ACG-GATG-TATTTCT-AAGAGCCAATACCGAGA-  44

seq1  CCCCTTGAGGCTAAGGAGCATGCCTTCCACACGGAGTTGTCACCTGTGGT  99
       ||| ||||||||||||||||||  |||||||| |||||||| |||||||
seq2  -CCCCTGAGGCTAAGGAGCATGC--TCCACACGAAGTTGTCAACTGTGGT  91

seq1  ATTCCTGGATGGCTCAGCATTGTTAACAAGGTCAAGTCTCCCTCTGAAGC  149
      |||||| ||| |||||||| |||  |||||||||||||||||||||||||
seq2  ATTCCT-GAT-GCTCAGCA-TGT--ACAAGGTCAAGTCTCCCTCTGAAGC  136

seq1  AGCACTTGGCATTATCTATTGAAAAGTTATTGTTTCCTTTACTTTACTTA  199
      ||||| ||||| |||||| |||||||||| ||||||||||||||||||||
seq2  AGCAC-TGGCA-TATCTA-TGAAAAGTTA-TGTTTCCTTTACTTTACTTA  182

seq1  AAGATGAAAGGGCCACAGGGCCTCTAAATTATTTTTCAGTTTACACCAGC  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGATGAAAGGGCCACAGGGCCTCTAAATTA-TTTTCAGTTTACACCAGC  231

seq1  ACTTGCCTCCAGATTTCTAGTATGTGAAATATAGATAATATATAATTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTCCAGATTTCTAGTATGTGAAATATAGATAATATATAATTTAA  281

seq1  GATTTTCTTACTAATTAGTAAACAATCTGAGGCTTTGTTACTGCCAGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTACTAATTAGTAAACAATCTGAGGCTTTGTTACTGCCAGAGG  331

seq1  GCAATATACGATGTGCCTTTTTTCACCCTGTGATATCAGATAAATTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATACGATGTGCCTTTTTTCACCCTGTGATATCAGATAAATTATTT  381

seq1  TTTAAAATTGAAAACTCTCCAAAGTGCTATCCGATAAACTATTTTAATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTGAAAACTCTCCAAAGTGCTATCCGATAAACTATTTTAATTG  431

seq1  AAAAGACTCTAAACTGCTATTCAGCACCGCATAGCTCTTCTTAACCCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTCTAAACTGCTATTCAGCACCGCATAGCTCTTCTTAACCCAGG  481

seq1  CTCACCTTTTGGTAATCAAAAGAACATTTACAGAAGTATGAGACAAACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTTTGGTAATCAAAAGAACATTTACAGAAGTATGAGACAAACAC  531

seq1  AATTATGAAAGTAAAATGAAGGCCTAAATAAAAAATCACAGAACAAGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAAAGTAAAATGAAGGCCTAAATAAAAAATCACAGAACAAGAGG  581

seq1  GTAATTCTATTCACTCTTTCATATTTCATTATTTGATAACATCAGATGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCTATTCACTCTTTCATATTTCATTATTTGATAACATCAGATGAT  631

seq1  GAATCCATCAGAATTGCTTTGGCAAGTGCAAACAAAAAATGGTCCTGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATCAGAATTGCTTTGGCAAGTGCAAACAAAAAATGGTCCTGATC  681

seq1  AATATTTATTAAAACCTTCAGAATGGGAGAAGGACTTGAGCTGACTTCGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTAAAACCTTCAGAATGGGAGAAGGACTTGAGCTGACTTCGT  731

seq1  AATGTAGTAAATAATTATTCATATAAACAGGCTCCGACCAAAGGCAGGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTAAATAATTATTCATATAAACAGGCTCCGACCAAAGGCAGGAC  781

seq1  TAGACCAAAGAGACACAGTTTTAATTGTACTGAATGTAAAATACAAATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAAAGAGACACAGTTTTAATTGTACTGAATGTAAAATACAAATTG  831

seq1  GCCTCTAGTCCTCTTGCAGAAACCTTAATTTTAAAAATTATCTGATAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAGTCCTCTTGCAGAAACCTTAATTTTAAAAATTATCTGATAGAG  881

seq1  TGGAGAGTGACATATAAATCCTTAATTGTTGGAGTGAGAATTTCAACCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTGACATATAAATCCTTAATTGTTGGAGTGAGAATTTCAACCTT  931

seq1  AGATATTTTTAAATTTAGAATGTATTCCAAAAGTGGAATGAGGACAGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTTAAATTTAGAATGTATTCCAAAAGTGGAATGAGGACAGAGT  981

seq1  TACCAACTAAGAGCATGGGGAGACATTCTCTCCACTCTCAGTGACTGTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTAAGAGCATGGGGAGACATTCTCTCCACTCTCAGTGACTGTAA  1031

seq1  CAGGAACGCTGCCATCATCTCAGCAGCTACAGGGATGGACTCATCCCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACGCTGCCATCATCTCAGCAGCTACAGGGATGGACTCATCCCTGT  1081

seq1  TAGGACTGATGGACTGGCATCAGTGGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  TAGGACTGATGGACTGGCATCAGTGGAATTC  1112

seq1: chr6_33792623_33793141
seq2: B6Ng01-140N03.g_69_587

seq1  GAATTCACTCTGTAACTAGTTCTTTCCTTTTAACCCGTCCCATTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAACTAGTTCTTTCCTTTTAACCCGTCCCATTCTTTTT  50

seq1  CTAGATTAGATGTTGAAACCATGTAAGTAGAAGAGAGACCTTTCACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTAGATGTTGAAACCATGTAAGTAGAAGAGAGACCTTTCACTGAT  100

seq1  ACTCCAGCAAACCAGAGTTGACAGAGGGCCGGATTTAGCACATTGAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCAAACCAGAGTTGACAGAGGGCCGGATTTAGCACATTGAGTAC  150

seq1  CATATAGCACTGTATGAGCCAAAAAGACTGCAAAGTTACTCTCCTCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCACTGTATGAGCCAAAAAGACTGCAAAGTTACTCTCCTCCTAT  200

seq1  AATTAGTTTTTAAAGCTCAGAAGACTATTTGGTGAACAGATGAATATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTTTAAAGCTCAGAAGACTATTTGGTGAACAGATGAATATAGA  250

seq1  ATCCAGTGTCCTTTGCATTGAGTAAAAGCTATGCTCTCTTCATTATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGTCCTTTGCATTGAGTAAAAGCTATGCTCTCTTCATTATTAAA  300

seq1  TGAGGCCTTTTTCTCTTCTTGTGTTTTAACTGAAAAAAAAAAAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTTTTTCTCTTCTTGTGTTTTAACTGAAAAAAAAAAAAAAAAAG  350

seq1  ATGTATTATTTCCCAGTTCAGCATTGAATAGATGGAGGAAAAAAAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATTTCCCAGTTCAGCATTGAATAGATGGAGGAAAAAAAAACTA  400

seq1  GGTCAAGCTAGGGCTTTAATAGAACCCTTTTGTTCCCAAAGAGCTAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCTAGGGCTTTAATAGAACCCTTTTGTTCCCAAAGAGCTAAAAG  450

seq1  CAGGCTCTCAAGCCCATTGTCTTTGCGCCTGTCATGGTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTCAAGCCCATTGTCTTTGCGCCTGTCATGGTGTGTGTGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGTG  519
      |||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTG  519