BAC Information

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BAC

Clone NameB6Ng01-141E09
Chromosome6 (Build37)
Map Location 52,990,947 - 53,111,934
singlet/doubletdoublet
Overlap geneJazf1, LOC666259
Upstream geneLOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E09.bB6Ng01-141E09.g
ACCDH939772DH939773
length1,147469
definitionDH939772|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E09, 5' end.DH939773|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,990,947 - 52,992,105)(53,111,460 - 53,111,934)
sequence
gaattcatgaatcaataaacagacaagtaagacaccttcatcaatgctgc
atattctgtttttataatattctttacaacatatagaaaccaagtggctt
ccaatttcctttaattggaaactgattgtatcttaaatgatttttttgtt
tgtttttgtttttcgagacagggtttctctgtatggccctggctgtccgg
gaactcactctgtagaccaggctggcctcaaactcagaaatctgcctgcc
tctgcctcccaagtgctgggattaaaggcgtgcgccaccacgcctggctt
aaatggattttaaagtggaaagagactacaatatgaacattcacatgtac
actcacacacattcctacaacgggctgctctatgaatctcattatcactg
tcttccttttcataataaaacctgtagtctggcctgggcaaattgttgtc
catctgaaaactctatctcttcatcgcctgcagctatgtctgctcaccaa
caaatgctctttttcatacactgaagaactgacagggagaaaaccaagtg
taatgaagatcacacaggagggaagacgatctctccccagcagaggtagg
caaacttctagaaaatgctacccagcaaactttttgacttggcaggctat
actgtctctacgacttaagtctcccactccagtgccacagcaagtacaga
gagtgagacacaagcacgtgactgctgcaactgaaccttacttatggaca
tgaaacaagagttcaactctcatagctgtagactttttccaattacttaa
aaataatgcaataaccattttttagcatgcagaccatactaaaacagaaa
acaagccaaatttaacccagggtccaccatttgccaatccgtattcttga
taacaatgaagcaacaaatagaaggactggcctttagagctggtggagta
gcagggagaagttcttctcttttgttagggattgtattctgagtccacgt
ctaggaagctattcatgtaatcccattcaggtacaacacacagagctata
ctttgaattggaagactggactctacatcttctacctctggctggaaaca
ggactccagaatgctactaagatctggaactgtaagcaagaaagaga
tttactccatcctccctcccctttgcccctgagagggtgctttctccccc
cacctccacccccaccccaggcatgtccctttcatggggcatcaagtctc
tacagcattaggcgaaacctctcccactgaggccagataaggcagggagt
aacttatcaacaggacaaaaccctcagaattttgtgactaagcagaaatc
tagctgaaagattctggagatgttggtatagttaaattggagaaacataa
aactataaaggggattgatggacggatggagaagatcatgcagaatctag
cataaagggaatgaagggaagaagggacagagggaaggagaaggaaggtg
gaggagccaaaatgtcacttgtgagtttcaagttttcaatgctgtatgtg
acagtaacaatcaacagtgcagttgttctgttccttttctggggaggggg
tcttttctggggagggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52990947_52992105
seq2: B6Ng01-141E09.b_49_1195

seq1  GAATTCATGAATCAATAAACAGACAAGTAAGACACCTTCATCAATGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATCAATAAACAGACAAGTAAGACACCTTCATCAATGCTGC  50

seq1  ATATTCTGTTTTTATAATATTCTTTACAACATATAGAAACCAAGTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGTTTTTATAATATTCTTTACAACATATAGAAACCAAGTGGCTT  100

seq1  CCAATTTCCTTTAATTGGAAACTGATTGTATCTTAAATGATTTTTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCCTTTAATTGGAAACTGATTGTATCTTAAATGATTTTTTTGTT  150

seq1  TGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATGGCCCTGGCTGTCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATGGCCCTGGCTGTCCGG  200

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCC  250

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCTT  300

seq1  AAATGGATTTTAAAGTGGAAAGAGACTACAATATGAACATTCACATGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTTTAAAGTGGAAAGAGACTACAATATGAACATTCACATGTAC  350

seq1  ACTCACACACATTCCTACAACGGGCTGCTCTATGAATCTCATTATCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACACATTCCTACAACGGGCTGCTCTATGAATCTCATTATCACTG  400

seq1  TCTTCCTTTTCATAATAAAACCTGTAGTCTGGCCTGGGCAAATTGTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTTCATAATAAAACCTGTAGTCTGGCCTGGGCAAATTGTTGTC  450

seq1  CATCTGAAAACTCTATCTCTTCATCGCCTGCAGCTATGTCTGCTCACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAACTCTATCTCTTCATCGCCTGCAGCTATGTCTGCTCACCAA  500

seq1  CAAATGCTCTTTTTCATACACTGAAGAACTGACAGGGAGAAAACCAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTCTTTTTCATACACTGAAGAACTGACAGGGAGAAAACCAAGTG  550

seq1  TAATGAAGATCACACAGGAGGGAAGACGATCTCTCCCCAGCAGAGGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGATCACACAGGAGGGAAGACGATCTCTCCCCAGCAGAGGTAGG  600

seq1  CAAACTTCTAGAAAATGCTACCCAGCAAACTTTTTGACTTGGCAGGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTAGAAAATGCTACCCAGCAAACTTTTTGACTTGGCAGGCTAT  650

seq1  ACTGTCTCTACGACTTAAGTCTCCCACTCCAGTGCCACAGCAAGTACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTACGACTTAAGTCTCCCACTCCAGTGCCACAGCAAGTACAGA  700

seq1  GAGTGAGACACAAGCACGTGACTGCTGCAACTGAACCTTACTTATGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGACACAAGCACGTGACTGCTGCAACTGAACCTTACTTATGGACA  750

seq1  TGAAACAAGAGTTCAACTCTCATAGCTGTAAGACTTTTTCCAACTACTTA  800
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TGAAACAAGAGTTCAACTCTCATAGCTGT-AGACTTTTTCCAATTACTTA  799

seq1  AAAATAATGCAATAACCA-TTTTTAGCATGCAGACCATACTAAAACAGAA  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAATAATGCAATAACCATTTTTTAGCATGCAGACCATACTAAAACAGAA  849

seq1  AACAAGCCAAATTTAGCCCAGGGTCCACCATTTGCCAATCCGTATTCTTG  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACAAGCCAAATTTAACCCAGGGTCCACCATTTGCCAATCCGTATTCTTG  899

seq1  ATAACAATGAAGCAACAAATAGAAGGACTGGCCCTTAGAGCT-GTGGAGT  948
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  ATAACAATGAAGCAACAAATAGAAGGACTGGCCTTTAGAGCTGGTGGAGT  949

seq1  AGCAGGGAGAAGTTCCTCTCTTTTGTAAGGGATTGTATTCTGGAGTCCAC  998
      ||||||||||||||| |||||||||| |||||||||||||| ||||||||
seq2  AGCAGGGAGAAGTTCTTCTCTTTTGTTAGGGATTGTATTCT-GAGTCCAC  998

seq1  GTCTAGGAAGCATATCATGTAACCCCATCCAGGTACCAAACACACAGAGC  1048
      |||||||||||   |||||||| ||||| |||||||  ||||||||||||
seq2  GTCTAGGAAGCTATTCATGTAATCCCATTCAGGTAC--AACACACAGAGC  1046

seq1  TATACTTTGATATGGGAAGACCTGAGCTTCTTTACATCTTCTTACCCTTG  1098
      |||||||||| || |||||||  ||    || ||||||||||  | || |
seq2  TATACTTTGA-ATTGGAAGACTGGA----CTCTACATCTTCTACCTCTGG  1091

seq1  CTGTGGAAGACAGGGACTCAAGAATGCTAACTAGAGATCTGGGAACTGTA  1148
      |  ||||| ||| |||||| |||||||| |||| |||||| |||||||||
seq2  C--TGGAA-ACA-GGACTCCAGAATGCT-ACTA-AGATCT-GGAACTGTA  1134

seq1  A--AGCAAAGAGA  1159
      |  |  |||||||
seq2  AGCAAGAAAGAGA  1147

seq1: chr6_53111460_53111934
seq2: B6Ng01-141E09.g_67_541 (reverse)

seq1  ACCCCCTCCCCAGAAAAGACCCCCTCCCCAGAAAAGGAACAGAACAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCCCCAGAAAAGACCCCCTCCCCAGAAAAGGAACAGAACAACTG  50

seq1  CACTGTTGATTGTTACTGTCACATACAGCATTGAAAACTTGAAACTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGATTGTTACTGTCACATACAGCATTGAAAACTTGAAACTCACA  100

seq1  AGTGACATTTTGGCTCCTCCACCTTCCTTCTCCTTCCCTCTGTCCCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATTTTGGCTCCTCCACCTTCCTTCTCCTTCCCTCTGTCCCTTCT  150

seq1  TCCCTTCATTCCCTTTATGCTAGATTCTGCATGATCTTCTCCATCCGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCATTCCCTTTATGCTAGATTCTGCATGATCTTCTCCATCCGTCC  200

seq1  ATCAATCCCCTTTATAGTTTTATGTTTCTCCAATTTAACTATACCAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCCCCTTTATAGTTTTATGTTTCTCCAATTTAACTATACCAACAT  250

seq1  CTCCAGAATCTTTCAGCTAGATTTCTGCTTAGTCACAAAATTCTGAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAATCTTTCAGCTAGATTTCTGCTTAGTCACAAAATTCTGAGGGT  300

seq1  TTTGTCCTGTTGATAAGTTACTCCCTGCCTTATCTGGCCTCAGTGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTGTTGATAAGTTACTCCCTGCCTTATCTGGCCTCAGTGGGAGA  350

seq1  GGTTTCGCCTAATGCTGTAGAGACTTGATGCCCCATGAAAGGGACATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCGCCTAATGCTGTAGAGACTTGATGCCCCATGAAAGGGACATGCC  400

seq1  TGGGGTGGGGGTGGAGGTGGGGGGAGAAAGCACCCTCTCAGGGGCAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGGGGTGGAGGTGGGGGGAGAAAGCACCCTCTCAGGGGCAAAGG  450

seq1  GGAGGGAGGATGGAGTAAAGAATTC  475
      |||||||||||||||||||||||||
seq2  GGAGGGAGGATGGAGTAAAGAATTC  475