BAC Information

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BAC

Clone NameB6Ng01-141G02
Chromosome6 (Build37)
Map Location 87,277,018 - 87,418,140
singlet/doubletdoublet
Overlap geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25
Upstream geneLOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e
Downstream geneProkr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141G02.bB6Ng01-141G02.g
ACCDH939853DH939854
length1,114693
definitionDH939853|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G02, 5' end.DH939854|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,417,002 - 87,418,140)(87,277,018 - 87,277,710)
sequence
gaattcatagctatttccaaatattttaactcacgaaactatgggaacag
gagagataaccaacgtgctcttcctatacagacacaccagtgatgtctct
ctactcactgccgacaaaggggcagtaggcttatttaccagtgtcaaaca
tctcttccaggctcagcaggagttggtgaagcagctttctacccttcccc
gagacaactacaacctcctgagctacatctgcaggtgagcatccaggtgt
ggagccacagtttccagccatggcagagagaagtccccgttagaagagga
agctttctaaggtcacagattctggtccagaactgtagaagctcaactct
gtttgcgtattattgacagaggactcaccagggatccctaagaacctgca
cacagaatacatgtactcttccttcagacctgccccaggtcctgcaagag
aacctggaatgcctgttatccctgaaactaccaccctggaaacattcatt
ctaggccatcagttatagtttcctgcagtcctctgtgggaacctactgtg
tgaggtcctttgtgaggacctactgtgtgaggtccttgtggcgatacctt
acaggtggtccagcccagatctgctgtggtggacaccttcaccccataca
tacctccattttgtcattttcaaaaatactgtgatgtaatttccaagttg
taaagatgattctgacttaatctggagaccacaaagagacaagaactgtg
aataaaggaccagcactagtgcagcccctcgtccagtgatgccttccttc
tcttgggtgttttatcttctgatgcatcttttctactgcagtgaaactgc
aggatggttttatacccatgaaaagcatgtcctttatcccaggataaaat
atcccgtaaaacttcataaatttcatcatttgaacatacgatttctattt
ctctaattttacaaataaagttctttagaaaataattttataatcaccta
aattatgatatttcagtctacccctttgaatgctttaaaattcagaatcc
ctactaatctgttagtgtttggtttctacacatctaaggattcagcttta
gtgtggaaatatag
gaattctccctggagttcagttaggaagggtgtgttgccttggcttccat
ttgttctccagcaaggaggaaggccactgtccactgagctgagtgccagc
tgttcttgtctttctgctcagcctcacacttactgtgagagtgaaggact
cacaccacaatcatctccggagtgttccccagtgagcctggacccagggt
gggtgggacccagggccttagcacactcccttctcactggtccacttcct
cctgaccactgcttctcctgctcagatgaatcctttcatgctaggaatca
acaagcttttaaaaattatttaaattcattaattagtttggttgggggca
gggggtaggttttctgaatagctgtcttgtgccccctgtgtagtgcctgc
agaggccaggaaagagcaccagaattcttaggagtggggttacagacgac
tgtgagccaccatgtgggtgctgggagtcaaacccagctcctctgcaaga
gcgccaagtattcctaaccacgaggctctccagcctcaaaggcagcaagc
ttggtgtgtgttgctttgcttttcaacctttagcaaggattcttcacaaa
gtggagcctctgcttggtggctcttgaaaatcagtgtagaggcaatctat
taatttttggttatcacaatgatcagaaagagaatcatgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87417002_87418140
seq2: B6Ng01-141G02.b_49_1162 (reverse)

seq1  CTATATTTCCACCCACTAGAAGCCTGAAATCCTTAGATGTGTTAGAAAAA  50
      |||||||||||  ||||| ||| ||| |||||||||||||| ||| ||| 
seq2  CTATATTTCCA--CACTA-AAG-CTG-AATCCTTAGATGTG-TAG-AAAC  43

seq1  CAAAAACAACTAAACAGATAGGTAAAGGAATTCTGGATATTTTTAAAAAG  100
      |||| ||     |||||||  ||  ||| |||||| || ||     ||||
seq2  CAAACAC----TAACAGATTAGT--AGGGATTCTGAATTTT-----AAAG  82

seq1  CATTCAAAGGGGGTAGACTGAAATATCATAAAATTTAGGTGATTTATAAA  150
      |||||||| ||||||||||||||||||||  ||||||||||| |||||||
seq2  CATTCAAA-GGGGTAGACTGAAATATCAT--AATTTAGGTGA-TTATAAA  128

seq1  ATTAATTTCTTAAGGACTTTATTTGTAAAAATTAGGAGAAATAAGAAATC  200
      |||| ||||| ||| ||||||||||| ||||||| ||||||| |||||||
seq2  ATTATTTTCTAAAGAACTTTATTTGT-AAAATTA-GAGAAAT-AGAAATC  175

seq1  GTATGTTCAAATGATGAAAATTATGAGTTATTACGGGATAATTTATCCTG  250
      ||||||||||||||||||| ||||||  | |||||||||| |||||||||
seq2  GTATGTTCAAATGATGAAATTTATGAAGTTTTACGGGATATTTTATCCTG  225

seq1  GGATAAAGGACATGCTTTTCATGGGTATAAAACCATTCCTGCAGTTTCAC  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGATAAAGGACATGCTTTTCATGGGTATAAAACCA-TCCTGCAGTTTCAC  274

seq1  TGCAGTAGAAAAGATGCATCAGAAGATAAAACACCCAAGAGAAGGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGAAAAGATGCATCAGAAGATAAAACACCCAAGAGAAGGAAGGC  324

seq1  ATCACTGGACGAGGGGCTGCACTAGTGCTGGTCC-TTATTCACAGTTCTT  399
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCACTGGACGAGGGGCTGCACTAGTGCTGGTCCTTTATTCACAGTTCTT  374

seq1  GTCTCTTTGTGGTCTCCAGATTAAGTCAGAATCATCTTTACAACTTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTGTGGTCTCCAGATTAAGTCAGAATCATCTTTACAACTTGGAA  424

seq1  ATTACATCACAGTATTTTTGAAAATGACAAAATGGAGGTATGTATGGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCACAGTATTTTTGAAAATGACAAAATGGAGGTATGTATGGGGT  474

seq1  GAAGGTGTCCACCACAGCAGATCTGGGCTGGACCACCTGTAAGGTATCGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTCCACCACAGCAGATCTGGGCTGGACCACCTGTAAGGTATCGC  524

seq1  CACAAGGACCTCACACAGTAGGTCCTCACAAAGGACCTCACACAGTAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGACCTCACACAGTAGGTCCTCACAAAGGACCTCACACAGTAGGT  574

seq1  TCCCACAGAGGACTGCAGGAAACTATAACTGATGGCCTAGAATGAATGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGAGGACTGCAGGAAACTATAACTGATGGCCTAGAATGAATGTT  624

seq1  TCCAGGGTGGTAGTTTCAGGGATAACAGGCATTCCAGGTTCTCTTGCAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTGGTAGTTTCAGGGATAACAGGCATTCCAGGTTCTCTTGCAGG  674

seq1  ACCTGGGGCAGGTCTGAAGGAAGAGTACATGTATTCTGTGTGCAGGTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGGCAGGTCTGAAGGAAGAGTACATGTATTCTGTGTGCAGGTTCT  724

seq1  TAGGGATCCCTGGTGAGTCCTCTGTCAATAATACGCAAACAGAGTTGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATCCCTGGTGAGTCCTCTGTCAATAATACGCAAACAGAGTTGAGC  774

seq1  TTCTACAGTTCTGGACCAGAATCTGTGACCTTAGAAAGCTTCCTCTTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGTTCTGGACCAGAATCTGTGACCTTAGAAAGCTTCCTCTTCTA  824

seq1  ACGGGGACTTCTCTCTGCCATGGCTGGAAACTGTGGCTCCACACCTGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGACTTCTCTCTGCCATGGCTGGAAACTGTGGCTCCACACCTGGAT  874

seq1  GCTCACCTGCAGATGTAGCTCAGGAGGTTGTAGTTGTCTCGGGGAAGGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTGCAGATGTAGCTCAGGAGGTTGTAGTTGTCTCGGGGAAGGGT  924

seq1  AGAAAGCTGCTTCACCAACTCCTGCTGAGCCTGGAAGAGATGTTTGACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGCTTCACCAACTCCTGCTGAGCCTGGAAGAGATGTTTGACAC  974

seq1  TGGTAAATAAGCCTACTGCCCCTTTGTCGGCAGTGAGTAGAGAGACATCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATAAGCCTACTGCCCCTTTGTCGGCAGTGAGTAGAGAGACATCA  1024

seq1  CTGGTGTGTCTGTATAGGAAGAGCACGTTGGTTATCTCTCCTGTTCCCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGTATAGGAAGAGCACGTTGGTTATCTCTCCTGTTCCCAT  1074

seq1  AGTTTCGTGAGTTAAAATATTTGGAAATAGCTATGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCGTGAGTTAAAATATTTGGAAATAGCTATGAATTC  1114

seq1: chr6_87277018_87277710
seq2: B6Ng01-141G02.g_69_761

seq1  GAATTCTCCCTGGAGTTCAGTTAGGAAGGGTGTGTTGCCTTGGCTTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGGAGTTCAGTTAGGAAGGGTGTGTTGCCTTGGCTTCCAT  50

seq1  TTGTTCTCCAGCAAGGAGGAAGGCCACTGTCCACTGAGCTGAGTGCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCAGCAAGGAGGAAGGCCACTGTCCACTGAGCTGAGTGCCAGC  100

seq1  TGTTCTTGTCTTTCTGCTCAGCCTCACACTTACTGTGAGAGTGAAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTCTTTCTGCTCAGCCTCACACTTACTGTGAGAGTGAAGGACT  150

seq1  CACACCACAATCATCTCCGGAGTGTTCCCCAGTGAGCCTGGACCCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACAATCATCTCCGGAGTGTTCCCCAGTGAGCCTGGACCCAGGGT  200

seq1  GGGTGGGACCCAGGGCCTTAGCACACTCCCTTCTCACTGGTCCACTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGACCCAGGGCCTTAGCACACTCCCTTCTCACTGGTCCACTTCCT  250

seq1  CCTGACCACTGCTTCTCCTGCTCAGATGAATCCTTTCATGCTAGGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCACTGCTTCTCCTGCTCAGATGAATCCTTTCATGCTAGGAATCA  300

seq1  ACAAGCTTTTAAAAATTATTTAAATTCATTAATTAGTTTGGTTGGGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTTAAAAATTATTTAAATTCATTAATTAGTTTGGTTGGGGGCA  350

seq1  GGGGGTAGGTTTTCTGAATAGCTGTCTTGTGCCCCCTGTGTAGTGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAGGTTTTCTGAATAGCTGTCTTGTGCCCCCTGTGTAGTGCCTGC  400

seq1  AGAGGCCAGGAAAGAGCACCAGAATTCTTAGGAGTGGGGTTACAGACGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGGAAAGAGCACCAGAATTCTTAGGAGTGGGGTTACAGACGAC  450

seq1  TGTGAGCCACCATGTGGGTGCTGGGAGTCAAACCCAGCTCCTCTGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCATGTGGGTGCTGGGAGTCAAACCCAGCTCCTCTGCAAGA  500

seq1  GCGCCAAGTATTCCTAACCACGAGGCTCTCCAGCCTCAAAGGCAGCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAAGTATTCCTAACCACGAGGCTCTCCAGCCTCAAAGGCAGCAAGC  550

seq1  TTGGTGTGTGTTGCTTTGCTTTTCAACCTTTAGCAAGGATTCTTCACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGTGTTGCTTTGCTTTTCAACCTTTAGCAAGGATTCTTCACAAA  600

seq1  GTGGAGCCTCTGCTTGGTGGCTCTTGAAAATCAGTGTAGAGGCAATCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCCTCTGCTTGGTGGCTCTTGAAAATCAGTGTAGAGGCAATCTAT  650

seq1  TAATTTTTGGTTATCACAATGATCAGGAAGAGAATCATGAAAT  693
      |||||||||||||||||||||||||| ||||||||||||||||
seq2  TAATTTTTGGTTATCACAATGATCAGAAAGAGAATCATGAAAT  693