BAC Information

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BAC

Clone NameB6Ng01-141N03
Chromosome6 (Build37)
Map Location 142,656,662 - 142,858,069
singlet/doubletdoublet
Overlap geneCmas, Gm766, EG665037, St8sia1
Upstream geneEG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik
Downstream geneLOC665056, 5730419I09Rik, Etnk1, D6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N03.bB6Ng01-141N03.g
ACCDH940176DH940177
length1,0791,046
definitionDH940176|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N03, 5' end.DH940177|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,856,972 - 142,858,069)(142,656,662 - 142,657,713)
sequence
gaattctgtgcctgtcatcatcccggaataaaaagggaaaatgtgccttt
ctgtaggaaccagaagtcattacatcaccatgtgtgcataactgtgaaaa
acactcagtgagcagatttttaaacttatgtgttgattttcctgtaagat
tctgaaatgactaattactttgttaacactctgaaaaaccagttgcaaca
tggagttgcctacctctctattctcctaggtatttcttgtttgttacaag
aaaactaagttgccctctacttgcctgctctctcttgtgttgctgctgat
ccgaaagtatcatagccagaaagcaggtgaacaggctctgcttggtttga
ggagcaagcttggattcccctgcctgtactggtcagccctttaaaggcct
gaggtcagactcagagtctaccaacagtgtgcagatgagctgctcgtatc
atggcagacaggaagtgtagtgaagtcataacaggaagtgatcaggacaa
ggtctgggccccagagacaaggccctagtaacctacttttaaccaagcat
tgccgccatcattccagagccttccaataatctatccccaaaatggaacc
actcagtgggctgaagcattctttaggccatagccctcaagatctaatct
ctgtgaaggccctcacccagggatgcattgctaacccttatttgtttctc
agtctgattgacttgataatccaaatagcaactcattggactgagtttca
gtgaaacaactacctggtcactcattctcaagtctagaccgtgtatctct
actgagcatgtcccttcacatactgtacaatgttatccagcattctatcg
ttagtattcctctggccactattgctcatcttactgttgctgccaggtac
acagaagagagagaaaggggtcgtggttaattgcatggtttgggtccttc
tttagggctgtgtcctagataggattctaagagcacgtatcttggaaata
tacacaagctctggtatccagtgcaagtcttcctttgactttcaccatgc
ctgaagcttatcatcaacagtttgaattc
gaattctgaaccaggcaaatcactttgcaagtaaagaactttgttctgaa
ccagtgctatatagtcagtcacgtgaatcaatacctagacactttctcca
aaggagacaggcgtgggaagggcagatgctcaaagcatgaaagtcccacc
tctgcatctcgtggtgcagctggcgcagctgacaaacctgcaaatctggc
ctcacgtcgatgcacagaaaaccgaccgtgtgaaaggtcctgttgaggat
gtgaatcagagaaacggcttcggaaacggcttaagaggacctgaggtcaa
tgtcaaaatattgctgttcctggaagagcaggtcacagaggcccatgggg
gatctggctgatcctcgagcctttaacaagccagataagcaccgaagctt
atgttggctttgtcacaaagacacagctttcattcactgcacatctacac
ccttaagaagatcttacttccttctttaatgagtcatgtgggaaacaggg
gccatggccaggaagtgtctggctgatgaaaatacaacaggaatcaacag
gcagctcttgcacccatcagctacgaaccaaagtctttttcttgttctgt
tttttgttgttgttgttgttctctttgttgtactagggattgaaccaaag
ggttttgtgtcaatattctaccactgagtcacatccctagtttttctttt
cttgtggggggtggggcggagaatagcccaatagcccttgatcttgcaac
cctcctgcctctgcctctcgcatggatagcattaaagggtgtgcgccggt
cacaccttggaagcatttgtttttttagaacagaataatcaaggctgctg
tcaatttggttttttctcaaatatttataagaagtaatcaaattcttagc
tctagtaggaggaccgagcattatagctaggcagacatgctggattttct
ctctatcgtctagttctaaggaagaaacatctgacacttcttgagtgaag
cttgtatagattgtcagggtgaaacctgaagtctggactggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142856972_142858069
seq2: B6Ng01-141N03.b_48_1126 (reverse)

seq1  GAATTCAAAACTGTTGATGATAAGGCTACAGGCAGTGGTGAAAGGTCCAA  50
      |||||| |||||||||||||||| ||| |||||| |||||||| ||| ||
seq2  GAATTC-AAACTGTTGATGATAA-GCTTCAGGCA-TGGTGAAA-GTCAAA  46

seq1  GGGAGACTTGGCAGACTGTGATAACAGAGCTTTGGTGTGATATCTCCAAG  100
      || |||||||    |||| |||| ||||||||  |||| |||| ||||||
seq2  GGAAGACTTG---CACTG-GATACCAGAGCTT--GTGT-ATATTTCCAAG  89

seq1  ATACAGTGCTCTCTGGATCCTTATCTAAGGACACAGCCCTAAAG-AGGAC  149
      |||| |||||||  | |||| ||||| ||||||||||||||||| |||||
seq2  ATAC-GTGCTCTTAGAATCC-TATCT-AGGACACAGCCCTAAAGAAGGAC  136

seq1  CCAAAACACTGCAATAAACACGGACACCTTTCTCTCTCTTCTGTTGTACC  199
      ||||| || |||||| |||   ||| ||||||||||||||||| ||||||
seq2  CCAAACCA-TGCAATTAACCACGACCCCTTTCTCTCTCTTCTG-TGTACC  184

seq1  TTGGCAGCAACAGTGAAGATGAGCAATAGTGGCCAGAGGAATACTAACGA  249
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  -TGGCAGCAACAGT-AAGATGAGCAATAGTGGCCAGAGGAATACTAACGA  232

seq1  TAAGAATGCTGGATAACATTTGTACAGTATGTGGAGGGACATGCTCAGTA  299
      | |||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  T-AGAATGCTGGATAACA-TTGTACAGTATGTGAAGGGACATGCTCAGTA  280

seq1  GAGATACACGGTCTGGACTTGAGAATGAGTGACCAGGTAGTTGTTTCACT  349
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGATACACGGTCTAGACTTGAGAATGAGTGACCAGGTAGTTGTTTCACT  330

seq1  GAAACTCAGTCCAATGAGTTGCTATTTGGATTATCAAGTCAATCAGACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGTCCAATGAGTTGCTATTTGGATTATCAAGTCAATCAGACTG  380

seq1  AGAAACAAATAAGGGTTAGCAATGCATCCCTGGGTGAGGGCCTTCACAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAATAAGGGTTAGCAATGCATCCCTGGGTGAGGGCCTTCACAGA  430

seq1  GATTAGATCTTGAGGGCTATGGCCTAAAGAATGCTTCAGCCCACTGAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGATCTTGAGGGCTATGGCCTAAAGAATGCTTCAGCCCACTGAGTG  480

seq1  GTTCCATTTTGGGGATAGATTATTGGAAGGCTCTGGAATGATGGCGGCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTTTGGGGATAGATTATTGGAAGGCTCTGGAATGATGGCGGCAA  530

seq1  TGCTTGGTTAAAAGTAGGTTACTAGGGCCTTGTCTCTGGGGCCCAGACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTTAAAAGTAGGTTACTAGGGCCTTGTCTCTGGGGCCCAGACCT  580

seq1  TGTCCTGATCACTTCCTGTTATGACTTCACTACACTTCCTGTCTGCCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGATCACTTCCTGTTATGACTTCACTACACTTCCTGTCTGCCATG  630

seq1  ATACGAGCAGCTCATCTGCACACTGTTGGTAGACTCTGAGTCTGACCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAGCAGCTCATCTGCACACTGTTGGTAGACTCTGAGTCTGACCTCA  680

seq1  GGCCTTTAAAGGGCTGACCAGTACAGGCAGGGGAATCCAAGCTTGCTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTAAAGGGCTGACCAGTACAGGCAGGGGAATCCAAGCTTGCTCCT  730

seq1  CAAACCAAGCAGAGCCTGTTCACCTGCTTTCTGGCTATGATACTTTCGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAGCAGAGCCTGTTCACCTGCTTTCTGGCTATGATACTTTCGGA  780

seq1  TCAGCAGCAACACAAGAGAGAGCAGGCAAGTAGAGGGCAACTTAGTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCAACACAAGAGAGAGCAGGCAAGTAGAGGGCAACTTAGTTTTC  830

seq1  TTGTAACAAACAAGAAATACCTAGGAGAATAGAGAGGTAGGCAACTCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAAACAAGAAATACCTAGGAGAATAGAGAGGTAGGCAACTCCAT  880

seq1  GTTGCAACTGGTTTTTCAGAGTGTTAACAAAGTAATTAGTCATTTCAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAACTGGTTTTTCAGAGTGTTAACAAAGTAATTAGTCATTTCAGAA  930

seq1  TCTTACAGGAAAATCAACACATAAGTTTAAAAATCTGCTCACTGAGTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGGAAAATCAACACATAAGTTTAAAAATCTGCTCACTGAGTGTT  980

seq1  TTTCACAGTTATGCACACATGGTGATGTAATGACTTCTGGTTCCTACAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGTTATGCACACATGGTGATGTAATGACTTCTGGTTCCTACAGA  1030

seq1  AAGGCACATTTTCCCTTTTTATTCCGGGATGATGACAGGCACAGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACATTTTCCCTTTTTATTCCGGGATGATGACAGGCACAGAATTC  1079

seq1: chr6_142656662_142657713
seq2: B6Ng01-141N03.g_69_1114

seq1  GAATTCTGAACCAGGCAAATCACTTTGCAAGTAAAGAACTTTGTTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACCAGGCAAATCACTTTGCAAGTAAAGAACTTTGTTCTGAA  50

seq1  CCAGTGCTATATAGTCAGTCACGTGAATCAATACCTAGACACTTTCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTATATAGTCAGTCACGTGAATCAATACCTAGACACTTTCTCCA  100

seq1  AAGGAGACAGGCGTGGGAAGGGCAGATGCTCAAAGCATGAAAGTCCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACAGGCGTGGGAAGGGCAGATGCTCAAAGCATGAAAGTCCCACC  150

seq1  TCTGCATCTCGTGGTGCAGCTGGCGCAGCTGACAAACCTGCAAATCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTCGTGGTGCAGCTGGCGCAGCTGACAAACCTGCAAATCTGGC  200

seq1  CTCACGTCGATGCACAGAAAACCGACCGTGTGAAAGGTCCTGTTGAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTCGATGCACAGAAAACCGACCGTGTGAAAGGTCCTGTTGAGGAT  250

seq1  GTGAATCAGAGAAACGGCTTCGGAAACGGCTTAAGAGGACCTGAGGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCAGAGAAACGGCTTCGGAAACGGCTTAAGAGGACCTGAGGTCAA  300

seq1  TGTCAAAATATTGCTGTTCCTGGAAGAGCAGGTCACAGAGGCCCATGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATATTGCTGTTCCTGGAAGAGCAGGTCACAGAGGCCCATGGGG  350

seq1  GATCTGGCTGATCCTCGAGCCTTTAACAAGCCAGATAAGCACCGAAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGCTGATCCTCGAGCCTTTAACAAGCCAGATAAGCACCGAAGCTT  400

seq1  ATGTTGGCTTTGTCACAAAGACACAGCTTTCATTCACTGCACATCTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCTTTGTCACAAAGACACAGCTTTCATTCACTGCACATCTACAC  450

seq1  CCTTAAGAAGATCTTACTTCCTTCTTTAATGAGTCATGTGGGAAACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGAAGATCTTACTTCCTTCTTTAATGAGTCATGTGGGAAACAGGG  500

seq1  GCCATGGCCAGGAAGTGTCTGGCTGATGAAAATACAACAGGAATCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCCAGGAAGTGTCTGGCTGATGAAAATACAACAGGAATCAACAG  550

seq1  GCAGCTCTTGCACCCATCAGCTACGAACCAAAGTCTTTTTCTTGTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTTGCACCCATCAGCTACGAACCAAAGTCTTTTTCTTGTTCTGT  600

seq1  TTTTTGTTGTTGTTGTTGTTCTCTTTGTTGTACTAGGGATTGAACCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTTGTTGTTGTTCTCTTTGTTGTACTAGGGATTGAACCAAAG  650

seq1  GGTTTTGTGTCAATATTCTACCACTGAGTCACATCCCTAGTTTTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTGTCAATATTCTACCACTGAGTCACATCCCTAGTTTTTCTTTT  700

seq1  CTTGT-GGGGGTGGGGCGGAGAATAGCCCAATAGCCCTTGATCTTGCAAC  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGGGGTGGGGCGGAGAATAGCCCAATAGCCCTTGATCTTGCAAC  750

seq1  CCTCCTGCCTCTGCCTCTCGCATGGATAGCATT-AAGGGTGTGCGCC-GT  797
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  CCTCCTGCCTCTGCCTCTCGCATGGATAGCATTAAAGGGTGTGCGCCGGT  800

seq1  CACACCTGGAAAGCATTTGTTTTTTTAGAACAGAATAATC-AGGCTGCTG  846
      ||||||| | |||||||||||||||||||||||||||||| |||||||||
seq2  CACACCTTGGAAGCATTTGTTTTTTTAGAACAGAATAATCAAGGCTGCTG  850

seq1  TCAATTTGGTCTTTCCTCAAATATTTATAAGAAGTTAACCAAATTCCTTA  896
      |||||||||| ||| ||||||||||||||||||| ||| |||||| ||||
seq2  TCAATTTGGTTTTTTCTCAAATATTTATAAGAAG-TAATCAAATT-CTTA  898

seq1  GCCCTAGTAGGAGGACCGAGCATTAAAGCTAGGCAGACATGCTGGATTCT  946
      || |||||||||||||||||||||| |||||||||||||||||||||| |
seq2  GCTCTAGTAGGAGGACCGAGCATTATAGCTAGGCAGACATGCTGGATTTT  948

seq1  CTCTCTACAGCCTTAGTTCTAAGGAAGGAAACAACTTGAACACTTCTTGA  996
      |||||||  | | ||||||||||||| |||||| ||   |||||||||||
seq2  CTCTCTATCGTC-TAGTTCTAAGGAA-GAAACATCT--GACACTTCTTGA  994

seq1  GTTGAAGCTGTAATAGAATTGTCAGGGTGGAACCCAGAGTACTTGGACTG  1046
      | |||||||   |||| |||||||||||| ||||   |||   |||||||
seq2  G-TGAAGCTTGTATAG-ATTGTCAGGGTGAAACCTGAAGT--CTGGACTG  1040

seq1  GGGAGG  1052
      ||||||
seq2  GGGAGG  1046