BAC Information

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BAC

Clone NameB6Ng01-142A06
Chromosome6 (Build37)
Map Location 106,915,397 - 106,916,569
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn
Downstream genePpia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142A06.bB6Ng01-142A06.g
ACCDH940322DH940323
length1,1641,158
definitionDH940322|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A06, 5' end.DH940323|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtaatatttatcaattgtcctacaaattaatgtcctactcag
agtaatcattccaggataatactagaaaatattctggtgctcccttcccc
aggagctcagtgtctcacatctgaatacatatctgcaaacctggtattag
gaatacatagaaagagatgaatttgagtgtgtatggtcagctgtaaaaat
agttccaaatgaaaaaactccgtgatttcatataggcgctataattcaca
tttacccatatcttagttttctgcaataatatgcttaatatctgcaaaat
ggaattattttaaaaacaccaaaatttaatgagtatgtttggctttgttt
gcaagatgtcagatatcaccccggacctttgtttttgttgtttgatattt
ttcttttggttatctagtccccttggttcctgaactgttttaaaacagag
tcagtttgagagtgtctaagaagtaaagcaacagttgacattgctatgtg
aagaagcacacaccataaccccattcaataccatcattttctttcattat
tctttttccatctcaccccaagtggacgtaatcctactaggaccatgtgg
tgggatgtagtaaaagcatcagagttattcaaattttggttccactgatg
agtacaggcaaaacacttcattttctgtttcttcaatattctgttataga
gtgggttttttgaaaattcacgtcctgtgaggtttgtaaatattaggaac
tttcctcatcctgtttccttaaagtttggcatgtgatcaaccactttgcc
atctctggcttctgccatctgaaagtttgtatgtgtctttacactcagac
aaaaggctagtaacttgagatatgtaaggtctctatgtaagcagtgcatt
ttgttcttgtctaattctcagcagagtgtcttaatagaggctctagtcta
taaaggtctgacatgctgacctttatagcctgctggagtgagagctctca
tcctagtatcatctacacaatatcaagactgtggtcaggctgttaaaagt
cattttgcactcatatttgccagtctttcaatttactcctcaatatttca
tatgctactaagcatcctattcccttgctaattcagaattctccatgaca
atcatgtcgagtac
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccaggt
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaatttctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccccccttagaagtgggaa
caaaacatccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctgtctcatgggagactatgctggggcctagcaaac
acagaagtggatgctcacacatggatggatcactgggctcccaatggaga
gctagagaagtacccaggagctaaagggatctgcaccctataggtgtaca
cattatgattaccagtaccccagagctctgactctagctgcatatgttct
aaagtggcctatgcggcatcatgcaaagagagagccattggactgccaac
tttattgccccagtacagggtatgccaggccaaaagggagattggtggca
gtgggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106915397_106916569
seq2: B6Ng01-142A06.b_47_1210

seq1  GAATTCATGTAATATTTATCAATTGTCCTACAAATTAATGTCCTACTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAATATTTATCAATTGTCCTACAAATTAATGTCCTACTCAG  50

seq1  AGTAATCATTCCAGGATAATACTAGAAAATATTCTGGTGCTCCCTTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCATTCCAGGATAATACTAGAAAATATTCTGGTGCTCCCTTCCCC  100

seq1  AGGAGCTCAGTGTCTCACATCTGAATACATATCTGCAAACCTGGTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCAGTGTCTCACATCTGAATACATATCTGCAAACCTGGTATTAG  150

seq1  GAATACATAGAAAGAGATGAATTTGAGTGTGTATGGTCAGCTGTAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATAGAAAGAGATGAATTTGAGTGTGTATGGTCAGCTGTAAAAAT  200

seq1  AGTTCCAAATGAAAAAACTCCGTGATTTCATATAGGCGCTATAATTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAATGAAAAAACTCCGTGATTTCATATAGGCGCTATAATTCACA  250

seq1  TTTACCCATATCTTAGTTTTCTGCAATAATATGCTTAATATCTGCAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCATATCTTAGTTTTCTGCAATAATATGCTTAATATCTGCAAAAT  300

seq1  GGAATTATTTTAAAAACACCAAAATTTAATGAGTATGTTTGGCTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATTTTAAAAACACCAAAATTTAATGAGTATGTTTGGCTTTGTTT  350

seq1  GCAAGATGTCAGATATCACCCCGGACCTTTGTTTTTGTTGTTTGATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGTCAGATATCACCCCGGACCTTTGTTTTTGTTGTTTGATATTT  400

seq1  TTCTTTTGGTTATCTAGTCCCCTTGGTTCCTGAACTGTTTTAAAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGGTTATCTAGTCCCCTTGGTTCCTGAACTGTTTTAAAACAGAG  450

seq1  TCAGTTTGAGAGTGTCTAAGAAGTAAAGCAACAGTTGACATTGCTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGAGAGTGTCTAAGAAGTAAAGCAACAGTTGACATTGCTATGTG  500

seq1  AAGAAGCACACACCATAACCCCATTCAATACCATCATTTTCTTTCATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCACACACCATAACCCCATTCAATACCATCATTTTCTTTCATTAT  550

seq1  TCTTTTTCCATCTCACCCCAAGTGGACGTAATCCTACTAGGACCATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCATCTCACCCCAAGTGGACGTAATCCTACTAGGACCATGTGG  600

seq1  TGGGATGTAGTAAAAGCATCAGAGTTATTCAAATTTTGGTTCCACTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTAGTAAAAGCATCAGAGTTATTCAAATTTTGGTTCCACTGATG  650

seq1  AGTACAGGCAAAACACTTCATTTTCTGTTTCTTCAATATTCTGTTATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGCAAAACACTTCATTTTCTGTTTCTTCAATATTCTGTTATAGA  700

seq1  GTGGGTTTTTTGAAAATTCAGGTCCTGTGAGGTTTGTAAATATTAGGAAC  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGGGTTTTTTGAAAATTCACGTCCTGTGAGGTTTGTAAATATTAGGAAC  750

seq1  TTTCCTCATCCTGTTTCCTTAAAGTTTGGCATGTGATCAACCACTTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCATCCTGTTTCCTTAAAGTTTGGCATGTGATCAACCACTTTGCC  800

seq1  ATCTCTGGCTTCTGCCATCTGAAAGTTTGTATGTGTCTTTACACTCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGCTTCTGCCATCTGAAAGTTTGTATGTGTCTTTACACTCAGAC  850

seq1  AAAAGGCTAGTAACTTGAGATATGTAAGGTCTCTATGTAAGGCAGTGCAT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAAGGCTAGTAACTTGAGATATGTAAGGTCTCTATGTAA-GCAGTGCAT  899

seq1  TTTGTTCTTGTCTAATTCTCAGCAGAGTGTCTTAATAGAGGCTCTAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTGTCTAATTCTCAGCAGAGTGTCTTAATAGAGGCTCTAGTCT  949

seq1  ATAAAGGTCTGACATGCTGACCTTTATAGCCTGCTGGAGGTGAGAAGCTC  1000
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  ATAAAGGTCTGACATGCTGACCTTTATAGCCTGCTGGA-GTGAG-AGCTC  997

seq1  TCATCCTAGTATCATCTACACAATATCAAAGACTGTGGTCAGGCTGTTAA  1050
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCATCCTAGTATCATCTACACAATATC-AAGACTGTGGTCAGGCTGTTAA  1046

seq1  AAGTCATTTTGCACTCATATTTGCCAGTCTTTCAATTTACTCCTCATATA  1100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGTCATTTTGCACTCATATTTGCCAGTCTTTCAATTTACTCCTCA-ATA  1095

seq1  -TTCATAGTGCTACTTAGCAATCCTATCCCTTTGCTTATCTCAGACATTC  1149
       |||||| ||||||| ||| ||||||| || ||||| || ||||| ||||
seq2  TTTCATA-TGCTACTAAGC-ATCCTATTCCCTTGCTAAT-TCAGA-ATTC  1141

seq1  CTCATGACCAATCATGTCGAGTAC  1173
        ||||| ||||||||||||||||
seq2  TCCATGA-CAATCATGTCGAGTAC  1164