BAC Information

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BAC

Clone NameB6Ng01-143G22
Chromosome6 (Build37)
Map Location 78,548,313 - 78,617,606
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143G22.bB6Ng01-143G22.g
ACCDH941368DH941369
length1,0861,118
definitionDH941368|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G22, 5' end.DH941369|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,616,503 - 78,617,606)(78,548,313 - 78,549,453)
sequence
gaattcacaaagaaaaagaaaataaaccacttataagggcatattattat
taaaacaattaaggtataaaaggaaaactcaaaattatccatattttaag
tgatatcatgctaaatgtagaagatcctaagactttccaagaggaattgt
caaacttcatattcagtcttacagatgccacaggatacaaaaatcaatgt
tcaaaaagtcagtttttctatacacaaactaactacctccctcttgccct
tcctttctctccctctatctctctctcatgcatacacaccacacacacac
acacacacacacacacacacacacacgcacacacacctaataaacacact
gagaaaaaatattcaggaacacaattttgttaacaaaagtctcaagccaa
taataagcacaagagagtgccataagaatgcatgttaacaatgtggtaaa
agatccctacaatggcacagcagagttcagcagaattaatattatggaaa
tgatagtattatcaaatacaatttatagattcaatacaataaaactgtaa
ttatatatcttatgcgaataggaaaagaattaattcatatagaagcataa
aaaggctgtaacacatgaatctatatctgaataaaatgagcatgaacaat
gctagagttattagaaaagcaactgggaattttgtaacagtgccatagtg
acaaaaagcatgaaggtactgacacaaaataaacacatagtccaatagga
ttgaatagtcaggtgttttcaatagcttaccacccaaaaagtacttatac
aatgaagaatgttttggtctggtactatagatattttgctcatgcagtag
atatttaccaagaagagtgttgccagtcatctggacagtaagtgctgaaa
atagtgctaataaattctgcatgcagattcaccacctttgtgagcatgtg
tgagtatgagacatgcagagactagtgttgtatctgcctagaagatagag
ttatgcattgtgtcactcctgttgtgggtgctggatcgactcgattctct
gtagaacagcaagaatcttacactacattctccaaa
gaattcaagggatcgttagccttaattcaccttgaagaacatcaaagact
gccaatcaaagtgacttgtcaaaaataaaagtgcatttcctttgcaggga
ggagtatctgacaaaaacatcttaatggatggaggatgtatacttgctca
tagtgtgtgagcacagtccatcatgttgtggatatcctgacttcaggacc
ttcacacaattgctcaggcccaggaccaagaagcagatgggttctgatac
tcagatctctttctcaggctaaaatctaggatgctaacctatggaatgat
acacccacactcagaacgggtcttcccttatcaattatttagttgcacag
gcatgccttcaggcttgtcaggagattattctagatcctgtcaagtagac
agtaatggtcataaaagttctcattcccatgttgagtggattatttgttg
aatagcttttgttatcagaaaaaaaacagctttcttcttaggcaagagtc
ctatggttcacaaatcagaggactgaataaaggttaaggcacttttacaa
cacgggcagttgtttggcgcctgagaggctcatgagaagacataatccat
ttatacacagaggggattttagagtgttagaggggcactaatggcccact
aaggaaaaactcctggttcagagagtaggatctctgatttgggtggagac
cactctggttgcgtgggtcaaccaccaaatcaaaagaccacttgtaaata
aaagatcacttggagccacactgacaaactggcacaataattggtccttt
taacaagatcttattccttttagagtccctgctcttagtacatagtgtac
ctggggcctcatgagtctgttcactactctagattcctcagaaaatataa
tttttttcttctcacagtcgctctccaaacatgctttccataggcaaatc
agcttctctgcatttctggcttcttactctttctctgagctcttccccac
ctgcgctgcttgttgtcatgcatctggtctccatgcagctaaacagcata
attccttttttctgttctcccttattacaatagatgtctgggataccttg
gcctgtctggggggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78616503_78617606
seq2: B6Ng01-143G22.b_49_1134 (reverse)

seq1  TTTGGAGAAATGGTAAGGTGGTAAAGATTTCTTGCTGTTCTTACAGAGAA  50
      |||||||||   |||  ||    |||| |||||||||||| |||||||||
seq2  TTTGGAGAA--TGTAGTGT----AAGA-TTCTTGCTGTTC-TACAGAGAA  42

seq1  TCCGAGTTCCGATCCCAGCACCCACAACAGGAGTGACACAATGGCCAATA  100
      | |||||  |||| |||||||||||||||||||||||||||||    |||
seq2  T-CGAGT--CGAT-CCAGCACCCACAACAGGAGTGACACAATG---CATA  85

seq1  ACTCTATC-TCTAGGCAGATACAACACTAGGTCTCTGCATGTTCTCATAC  149
      |||||||| |||||||||||||||||||| ||||||||||| ||||||||
seq2  ACTCTATCTTCTAGGCAGATACAACACTA-GTCTCTGCATG-TCTCATAC  133

seq1  TCACACATGCTCACAAAGGTGGTTGAATCTGCATGGCAGAATTTATTAGC  199
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TCACACATGCTCACAAAGGTGG-TGAATCTGCAT-GCAGAATTTATTAGC  181

seq1  ACTATTTTCAGCACTTACTGTCCAGATGACTGGCAACACTCTTCTTGGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTCAGCACTTACTGTCCAGATGACTGGCAACACTCTTCTTGGTA  231

seq1  AATATCTACTGCATGAGCAAAATATCTATAGTACCAGACCAAAACATTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTACTGCATGAGCAAAATATCTATAGTACCAGACCAAAACATTCT  281

seq1  TCATTGTATAAGTACTTTTTGGGTGGTAAGCTATTGAAAACACCTGACTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTATAAGTACTTTTTGGGTGGTAAGCTATTGAAAACACCTGACTA  331

seq1  TTCAATCCTATTGGACTATGTGTTTATTTTGTGTCAGTACCTTCATGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCTATTGGACTATGTGTTTATTTTGTGTCAGTACCTTCATGCTT  381

seq1  TTTGTCACTATGGCACTGTTACAAAATTCCCAGTTGCTTTTCTAATAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACTATGGCACTGTTACAAAATTCCCAGTTGCTTTTCTAATAACT  431

seq1  CTAGCATTGTTCATGCTCATTTTATTCAGATATAGATTCATGTGTTACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTGTTCATGCTCATTTTATTCAGATATAGATTCATGTGTTACAG  481

seq1  CCTTTTTATGCTTCTATATGAATTAATTCTTTTCCTATTCGCATAAGATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATGCTTCTATATGAATTAATTCTTTTCCTATTCGCATAAGATA  531

seq1  TATAATTACAGTTTTATTGTATTGAATCTATAAATTGTATTTGATAATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTACAGTTTTATTGTATTGAATCTATAAATTGTATTTGATAATAC  581

seq1  TATCATTTCCATAATATTAATTCTGCTGAACTCTGCTGTGCCATTGTAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTCCATAATATTAATTCTGCTGAACTCTGCTGTGCCATTGTAGG  631

seq1  GATCTTTTACCACATTGTTAACATGCATTCTTATGGCACTCTCTTGTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTACCACATTGTTAACATGCATTCTTATGGCACTCTCTTGTGCT  681

seq1  TATTATTGGCTTGAGACTTTTGTTAACAAAATTGTGTTCCTGAATATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGGCTTGAGACTTTTGTTAACAAAATTGTGTTCCTGAATATTTT  731

seq1  TTCTCAGTGTGTTTATTAGGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGTGTTTATTAGGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTG  781

seq1  TGTGTGTGTGTGTGTGGTGTGTATGCATGAGAGAGAGATAGAGGGAGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGGTGTGTATGCATGAGAGAGAGATAGAGGGAGAGA  831

seq1  AAGGAAGGGCAAGAGGGAGGTAGTTAGTTTGTGTATAGAAAAACTGACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGCAAGAGGGAGGTAGTTAGTTTGTGTATAGAAAAACTGACTT  881

seq1  TTTGAACATTGATTTTTGTATCCTGTGGCATCTGTAAGACTGAATATGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACATTGATTTTTGTATCCTGTGGCATCTGTAAGACTGAATATGAA  931

seq1  GTTTGACAATTCCTCTTGGAAAGTCTTAGGATCTTCTACATTTAGCATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACAATTCCTCTTGGAAAGTCTTAGGATCTTCTACATTTAGCATGA  981

seq1  TATCACTTAAAATATGGATAATTTTGAGTTTTCCTTTTATACCTTAATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTAAAATATGGATAATTTTGAGTTTTCCTTTTATACCTTAATTG  1031

seq1  TTTTAATAATAATATGCCCTTATAAGTGGTTTATTTTCTTTTTCTTTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAATAATATGCCCTTATAAGTGGTTTATTTTCTTTTTCTTTGTG  1081

seq1  AATTC  1104
      |||||
seq2  AATTC  1086

seq1: chr6_78548313_78549453
seq2: B6Ng01-143G22.g_69_1186

seq1  GAATTCAAGGGATCGTTAGCCTTAATTCACCTTGAAGAACATCAAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGATCGTTAGCCTTAATTCACCTTGAAGAACATCAAAGACT  50

seq1  GCCAATCAAAGTGACTTGTCAAAAATAAAAGTGCATTTCCTTTGCAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCAAAGTGACTTGTCAAAAATAAAAGTGCATTTCCTTTGCAGGGA  100

seq1  GGAGTATCTGACAAAAACATCTTAATGGATGGAGGATGTATACTTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATCTGACAAAAACATCTTAATGGATGGAGGATGTATACTTGCTCA  150

seq1  TAGTGTGTGAGCACAGTCCATCATGTTGTGGATATCCTGACTTCAGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTGAGCACAGTCCATCATGTTGTGGATATCCTGACTTCAGGACC  200

seq1  TTCACACAATTGCTCAGGCCCAGGACCAAGAAGCAGATGGGTTCTGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAATTGCTCAGGCCCAGGACCAAGAAGCAGATGGGTTCTGATAC  250

seq1  TCAGATCTCTTTCTCAGGCTAAAATCTAGGATGCTAACCTATGGAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTCTTTCTCAGGCTAAAATCTAGGATGCTAACCTATGGAATGAT  300

seq1  ACACCCACACTCAGAACGGGTCTTCCCTTATCAATTATTTAGTTGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACACTCAGAACGGGTCTTCCCTTATCAATTATTTAGTTGCACAG  350

seq1  GCATGCCTTCAGGCTTGTCAGGAGATTATTCTAGATCCTGTCAAGTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTCAGGCTTGTCAGGAGATTATTCTAGATCCTGTCAAGTAGAC  400

seq1  AGTAATGGTCATAAAAGTTCTCATTCCCATGTTGAGTGGATTATTTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGTCATAAAAGTTCTCATTCCCATGTTGAGTGGATTATTTGTTG  450

seq1  AATAGCTTTTGTTATCAGAAAAAAAACAGCTTTCTTCTTAGGCAAGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTTTGTTATCAGAAAAAAAACAGCTTTCTTCTTAGGCAAGAGTC  500

seq1  CTATGGTTCACAAATCAGAGGACTGAATAAAGGTTAAGGCACTTTTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTTCACAAATCAGAGGACTGAATAAAGGTTAAGGCACTTTTACAA  550

seq1  CACGGGCAGTTGTTTGGCGCCTGAGAGGCTCATGAGAAGACATAATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCAGTTGTTTGGCGCCTGAGAGGCTCATGAGAAGACATAATCCAT  600

seq1  TTATACACAGAGGGGATTTTAGAGTGTTAGAGGGGCACTAATGGCCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACAGAGGGGATTTTAGAGTGTTAGAGGGGCACTAATGGCCCACT  650

seq1  AAGGAAAAACTCCTGGTTCAGAGAGTAGGATCTCTGATTTGGGTGGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAACTCCTGGTTCAGAGAGTAGGATCTCTGATTTGGGTGGAGAC  700

seq1  CACTCTGGTTGCGTGGGTCAACCACCAAATCAAAAGACCACTTGTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGTTGCGTGGGTCAACCACCAAATCAAAAGACCACTTGTAAATA  750

seq1  AAAGATCACTTGGAGCCACACTGACAAAACTGGCACAATAATTGGTCCTT  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAGATCACTTGGAGCCACACTGAC-AAACTGGCACAATAATTGGTCCTT  799

seq1  TTAACAAGATCTTATTCCTTTTTAGAGTCCCTGCTCTTAGTACAATAGTG  850
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TTAACAAGATCTTATTCC-TTTTAGAGTCCCTGCTCTTAGTAC-ATAGTG  847

seq1  TACCTGGGGCCTCATGAGTCTGTTCACTACTCTAGATTCCTCAGAAAAAT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACCTGGGGCCTCATGAGTCTGTTCACTACTCTAGATTCCTCAG-AAAAT  896

seq1  ATAATTTTTTTCTTCTCACAGTCGCTCTTCCAAACATGCTTTTCCATA-G  949
      ||||||||||||||||||||||||||| ||||||||||| |||||||| |
seq2  ATAATTTTTTTCTTCTCACAGTCGCTC-TCCAAACATGC-TTTCCATAGG  944

seq1  CAAATCAGGCTTCTCTTGCATTTCTGGCTTCCTTACTCTTTCTCTGAAGC  999
      ||||||| ||||||| |||||||||||||| ||||||||||||||| |||
seq2  CAAATCA-GCTTCTC-TGCATTTCTGGCTT-CTTACTCTTTCTCTG-AGC  990

seq1  TTCCTTCCCCACCCTGCGGCTGCTTGTCTGTCATGCATCTGGTCTCCATG  1049
      |  |||||||| ||||| ||||||||| ||||||||||||||||||||||
seq2  T--CTTCCCCA-CCTGC-GCTGCTTGT-TGTCATGCATCTGGTCTCCATG  1035

seq1  CCAGCTCAAACAGCATAATTTCTTTTTTCTTTGTTCTTTCCCTTATACAA  1099
       ||||| ||||||||||||| ||||||||  |||||  ||||||||   |
seq2  -CAGCT-AAACAGCATAATTCCTTTTTTC--TGTTC--TCCCTTATTACA  1079

seq1  ATAGATG-CTGGGATTTACACTTTGCCTGTCCTGGGGGGATTT  1141
      ||||||| ||||||  ||| ||| |||||| ||||||||||||
seq2  ATAGATGTCTGGGA--TAC-CTTGGCCTGT-CTGGGGGGATTT  1118