BAC Information

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BAC

Clone NameB6Ng01-145F02
Chromosome6 (Build37)
Map Location 53,295,358 - 53,461,926
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145F02.bB6Ng01-145F02.g
ACCDH942753DH942754
length1,1441,056
definitionDH942753|Mus musculus domesticus DNA, BAC clone: B6Ng01-145F02, 5' end.DH942754|Mus musculus domesticus DNA, BAC clone: B6Ng01-145F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,460,770 - 53,461,926)(53,295,358 - 53,296,418)
sequence
gaattcaatgaaaaagtgcttataaaaatccattgtcccacactgtgcta
ttttcttgagtcttcacagcgatctgatgaggtggatgctattgtgccaa
catcagttgattagagaggcaaagctgagaccatgtaatcgtccctatgg
tctcactgacccatgtgacattatctctggaagctatggggtgctcagtg
catctgaattgacccttttgcttatagaatagtgtctgggttaggtttct
actgctgtgacaagacaccatgaccaaaagctaccaggggagggaagtgg
ttttattttagtttatagttccgaatcacagtccatcactgagggaatgt
aaggaaaggcagacacctggatggaggcaggaactgatgcagaggccatg
atggcttgctcctcctggctaatacaacatgcttccttagacggcccaag
accaactgcaccactaacaatgggcagagccctcctacatcaatcactac
ttaagaaatgtcctccagcatgcctacaggccagtcttctggagcttggg
tcaactcgataaacacaaacaaattaaaaaaaaaaaatcaaccagtgcag
agagaaacacaactaatagagattaggggaactgacttaaagtaaacttg
gggctagcacaggtataaataaaaaattccaacacaacaaaaaagttctt
tacacttcacccaatacttccagtcttggctcttaattctagccaggaag
cacaaaaagcagatttaagaaaaatgcctgatttcaaccctaaaataact
ggaatgtcaactggggtaagactgaagtggtgagtcaaaggacacacaca
ggatcctcattttccacaaagcctgtagtttcttatgcaaaaattgttgg
gttttaaaaagatattgaactcaaccatttcaagctatgaaactcatcat
ttattaatcattcattaaataatctgctatcaaatccaatagatagttgc
caagccagtaaacactggcttccaaggctaaacagaaatgctagtcacag
attttcagttttcttggcctgtgtctgaatttccatcaaacgaaactttc
aacttggaatgttaggctcgacccgacaatgctactgaagtgcc
gaattcctttgttcatgctggttatctaacctacagaggcagttgttcat
ccgatgtacaattttgtttcagtttccataaagagaagattgttgcacat
tttgaaatactgtgtggctcctgcaggacctagccctgcagttctagctg
gaagcctcatgaagacattcattgtacagcagagtgttaatagtgtgctg
ggattgtcgctgaatacctgatgtgtacagtttgcatcgcagccttctgc
tgagttaggtttctgtgttgtttcaggagcatagtggtactgcagttgga
gtgtgatgggactagggtgatgggatagcctgggctcttcattggaaggg
ggcactcaatgccacctcctctaggccttatcttgggaaaggagggatta
caaggctgcttctgcgtctcctaaaaggcaggagacctctaagacaagat
gccaagtaaggaatgtctgaagcctgcagctgcatcgctggaccaaacat
cttgctatttgagttgtgcaggaggtaatactcaggggattgctgcaatt
tctccagtctctgaggcaagagaattgccttcatccatctttgaaaacat
cctggaggactagaggcttctaggacaacattttttattcagtacacaaa
atacttagaattaatctaattctgccaggtctagatacaccccaaccagt
ttaaaatggtttcgctttgctgtgttaagtaagaagattcaagtggctcg
gagcagagggcctgaatttaagttgtagctctgacttttaccggtagtgt
gacttcagcccttattactttcctctctaaatgtcagatttgtcatctta
gaaataataagaaaaatactaccatcccataatcatctaaaaccaaatta
gattaatgtatgggaaaatgtctttgtaaactgtaagctctgcagagttc
acttattgctgttttgtcccatatgggaaggccacaagatgattatcctt
cttgtgagtggtcattttagtcagcctgctgaaggtcaaacgtggtgcct
ttgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53460770_53461926
seq2: B6Ng01-145F02.b_47_1190 (reverse)

seq1  GGCACTTCAGTAAGCCATTTGTCCCGGGTTTGAGACCTAACATTTCCAAG  50
      ||||||||||| |||   |||||   || | ||| ||||||| |||||||
seq2  GGCACTTCAGT-AGC--ATTGTC---GGGTCGAG-CCTAACA-TTCCAAG  42

seq1  TTTTGAAAGTGTCTGTTTGGGATGGAAA-TCAGACACAGGCAAGAAAAAC  99
        |||||||| || ||||  |||||||| |||||||||||| |  |||||
seq2  --TTGAAAGTTTC-GTTT--GATGGAAATTCAGACACAGGCCAAGAAAAC  87

seq1  TGAAAATCTGTGAACTAGC-TTTCTGTTTAAGCCTTGGAAAGCCAGTGTT  148
      |||||||||||| |||||| ||||||||| |||||||| |||||||||||
seq2  TGAAAATCTGTG-ACTAGCATTTCTGTTT-AGCCTTGG-AAGCCAGTGTT  134

seq1  TACTTGGCTGGGCAACTATCTATTGGGATTTGATAGCAGA-TATTTAATG  197
      ||| ||||| |||||||||||||| ||||||||||||||| |||||||||
seq2  TAC-TGGCTTGGCAACTATCTATT-GGATTTGATAGCAGATTATTTAATG  182

seq1  AATGATTAATAAATGATGAGTTTCATAGCTTGAAATGGTTGAGTTCAATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTAATAAATGATGAGTTTCATAGCTTGAAATGGTTGAGTTCAATA  232

seq1  TCTTTTTAAAA-CCAAC-ATTTTTGCATAAGAAACTAACAGGCTTTGTGG  295
      ||||||||||| ||||| |||||||||||||||||| |||||||||||||
seq2  TCTTTTTAAAACCCAACAATTTTTGCATAAGAAACT-ACAGGCTTTGTGG  281

seq1  AAAATGAGGATCCTGTGTGTGTCCTTTGACTCACCACTTCAGTCTTACCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGATCCTGTGTGTGTCCTTTGACTCACCACTTCAGTCTTACCC  331

seq1  CAGTTGACATTCCAGTTATTTTAGGGTTGAAATCAGGCATTTTTCTT-AA  394
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGTTGACATTCCAGTTATTTTAGGGTTGAAATCAGGCATTTTTCTTAAA  381

seq1  TCTGCTTTTTGTGCTTCCTGGCTAGAATTAAGAGCCAAGACTGGAAGTAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTTGTGCTTCCTGGCTAGAATTAAGAGCCAAGACTGGAAGTAT  431

seq1  TGGGTGAAGTGTAAAGAACTTTTTTGTTGTGTTGGAATTTTTTATTTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAAGTGTAAAGAACTTTTTTGTTGTGTTGGAATTTTTTATTTATA  481

seq1  CCTGTGCTAGCCCCAAGTTTACTTTAAGTCAGTTCCCCTAATCTCTATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTAGCCCCAAGTTTACTTTAAGTCAGTTCCCCTAATCTCTATTA  531

seq1  GTTGTGTTTCTCTCTGCACTGGTTGATTTTTTTTTTTTAATTTGTTTGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTTCTCTCTGCACTGGTTGATTTTTTTTTTTTAATTTGTTTGTG  581

seq1  TTTATCGAGTTGACCCAAGCTCCAGAAGACTGGCCTGTAGGCATGCTGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCGAGTTGACCCAAGCTCCAGAAGACTGGCCTGTAGGCATGCTGGA  631

seq1  GGACATTTCTTAAGTAGTGATTGATGTAGGAGGGCTCTGCCCATTGTTAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTCTTAAGTAGTGATTGATGTAGGAGGGCTCTGCCCATTGTTAG  681

seq1  TGGTGCAGTTGGTCTTGGGCCGTCTAAGGAAGCATGTTGTATTAGCCAGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGTTGGTCTTGGGCCGTCTAAGGAAGCATGTTGTATTAGCCAGG  731

seq1  AGGAGCAAGCCATCATGGCCTCTGCATCAGTTCCTGCCTCCATCCAGGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAAGCCATCATGGCCTCTGCATCAGTTCCTGCCTCCATCCAGGTG  781

seq1  TCTGCCTTTCCTTACATTCCCTCAGTGATGGACTGTGATTCGGAACTATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTTCCTTACATTCCCTCAGTGATGGACTGTGATTCGGAACTATA  831

seq1  AACTAAAATAAAACCACTTCCCTCCCCTGGTAGCTTTTGGTCATGGTGTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAATAAAACCACTTCCCTCCCCTGGTAGCTTTTGGTCATGGTGTC  881

seq1  TTGTCACAGCAGTAGAAACCTAACCCAGACACTATTCTATAAGCAAAAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAGCAGTAGAAACCTAACCCAGACACTATTCTATAAGCAAAAGG  931

seq1  GTCAATTCAGATGCACTGAGCACCCCATAGCTTCCAGAGATAATGTCACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCAGATGCACTGAGCACCCCATAGCTTCCAGAGATAATGTCACA  981

seq1  TGGGTCAGTGAGACCATAGGGACGATTACATGGTCTCAGCTTTGCCTCTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGTGAGACCATAGGGACGATTACATGGTCTCAGCTTTGCCTCTC  1031

seq1  TAATCAACTGATGTTGGCACAATAGCATCCACCTCATCAGATCGCTGTGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACTGATGTTGGCACAATAGCATCCACCTCATCAGATCGCTGTGA  1081

seq1  AGACTCAAGAAAATAGCACAGTGTGGGACAATGGATTTTTATAAGCACTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAGAAAATAGCACAGTGTGGGACAATGGATTTTTATAAGCACTT  1131

seq1  TTTCATTGAATTC  1157
      |||||||||||||
seq2  TTTCATTGAATTC  1144

seq1: chr6_53295358_53296418
seq2: B6Ng01-145F02.g_66_1121

seq1  GAATTCCTTTGTTCATGCTGGTTATCTAACCTACAGAGGCAGTTGTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTTCATGCTGGTTATCTAACCTACAGAGGCAGTTGTTCAT  50

seq1  CCGATGTACAATTTTGTTTCAGTTTCCATAAAGAGAAGATTGTTGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGTACAATTTTGTTTCAGTTTCCATAAAGAGAAGATTGTTGCACAT  100

seq1  TTTGAAATACTGTGTGGCTCCTGCAGGACCTAGCCCTGCAGTTCTAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATACTGTGTGGCTCCTGCAGGACCTAGCCCTGCAGTTCTAGCTG  150

seq1  GAAGCCTCATGAAGACATTCATTGTACAGCAGAGTGTTAATAGTGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCATGAAGACATTCATTGTACAGCAGAGTGTTAATAGTGTGCTG  200

seq1  GGATTGTCGCTGAATACCTGATGTGTACAGTTTGCATCGCAGCCTTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTCGCTGAATACCTGATGTGTACAGTTTGCATCGCAGCCTTCTGC  250

seq1  TGAGTTAGGTTTCTGTGTTGTTTCAGGAGCATAGTGGTACTGCAGTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGGTTTCTGTGTTGTTTCAGGAGCATAGTGGTACTGCAGTTGGA  300

seq1  GTGTGATGGGACTAGGGTGATGGGATAGCCTGGGCTCTTCATTGGAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGGGACTAGGGTGATGGGATAGCCTGGGCTCTTCATTGGAAGGG  350

seq1  GGCACTCAATGCCACCTCCTCTAGGCCTTATCTTGGGAAAGGAGGGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCAATGCCACCTCCTCTAGGCCTTATCTTGGGAAAGGAGGGATTA  400

seq1  CAAGGCTGCTTCTGCGTCTCCTAAAAGGCAGGAGACCTCTAAGACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCTTCTGCGTCTCCTAAAAGGCAGGAGACCTCTAAGACAAGAT  450

seq1  GCCAAGTAAGGAATGTCTGAAGCCTGCAGCTGCATCGCTGGACCAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTAAGGAATGTCTGAAGCCTGCAGCTGCATCGCTGGACCAAACAT  500

seq1  CTTGCTATTTGAGTTGTGCAGGAGGTAATACTCAGGGGATTGCTGCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATTTGAGTTGTGCAGGAGGTAATACTCAGGGGATTGCTGCAATT  550

seq1  TCTCCAGTCTCTGAGGCAAGAGAATTGCCTTCATCCATCTTTGAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTCTCTGAGGCAAGAGAATTGCCTTCATCCATCTTTGAAAACAT  600

seq1  CCTGGAGGACTAGAGGCTTCTAGGACAACATTTTTTATTCAGTACACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGACTAGAGGCTTCTAGGACAACATTTTTTATTCAGTACACAAA  650

seq1  ATACTTAGAATTAATCTAATTCTGCCAGGTCTAGATACACCCCAACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGAATTAATCTAATTCTGCCAGGTCTAGATACACCCCAACCAGT  700

seq1  TTAAAATGGTTTCGCTTTGCTGTGTTAAGTAAGAAGATTCAAGTGGCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGTTTCGCTTTGCTGTGTTAAGTAAGAAGATTCAAGTGGCTCG  750

seq1  GAGCAGAGGGCCTGAATTTAAGTTGTAGCTCTGACTTTTACCGGTAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGGGCCTGAATTTAAGTTGTAGCTCTGACTTTTACCGGTAGTGT  800

seq1  GACTTCAG-CCATATTACTTTCCCTCTCTAAATGTCAGATTTGTCATCTA  849
      |||||||| || ||||||||| ||||||||||||||||||||||||||| 
seq2  GACTTCAGCCCTTATTACTTT-CCTCTCTAAATGTCAGATTTGTCATCTT  849

seq1  GAAAATAATAAGAAAAATACTACCATCCCATAAATCATTCTAAGAACCAA  899
        ||||||||||||||||||||||||||||| ||||| ||||| ||||||
seq2  AGAAATAATAAGAAAAATACTACCATCCCAT-AATCA-TCTAA-AACCAA  896

seq1  ATTAGATTAATGTAT-GGAAAATGGCTTTGTAAACTGTTAAGCTCTGCAG  948
      ||||||||||||||| |||||||| |||||||||||| ||||||||||||
seq2  ATTAGATTAATGTATGGGAAAATGTCTTTGTAAACTG-TAAGCTCTGCAG  945

seq1  AGGTTCACTAATGGCTGTTTCTGTCCCATATGGGAAAGCCACAAGATGAA  998
      | ||||||| || ||||||| ||||||||||||||| ||||||||||| |
seq2  A-GTTCACTTATTGCTGTTT-TGTCCCATATGGGAAGGCCACAAGATG-A  992

seq1  TAATCTTTCTTGTGAGTGTCCATTTATGTCAGCCTGCTG-AGGTCATACC  1047
      | ||| ||||||||||||  |||||  |||||||||||| |||||| || 
seq2  TTATCCTTCTTGTGAGTGGTCATTTTAGTCAGCCTGCTGAAGGTCAAACG  1042

seq1  GTGTGCCTTTGAAG  1061
        ||||||||||||
seq2  TGGTGCCTTTGAAG  1056