BAC Information

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BAC

Clone NameB6Ng01-145F21
Chromosome6 (Build37)
Map Location 3,273,610 - 3,419,446
singlet/doubletdoublet
Overlap geneSamd9l, AI987662
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335
Downstream geneCcdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145F21.bB6Ng01-145F21.g
ACCDH942789DH942790
length9931,050
definitionDH942789|Mus musculus domesticus DNA, BAC clone: B6Ng01-145F21, 5' end.DH942790|Mus musculus domesticus DNA, BAC clone: B6Ng01-145F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,273,610 - 3,274,606)(3,418,393 - 3,419,446)
sequence
gaattccttagtggaactattttgggaagtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtaaatacatgttcatgtataagtgtatgcacac
gtggggggcagaagccaaagatggatgtctttcacagtcattctccacct
tagtttttgagagactgcataactgaacttggagctcaacaatttggttc
cctcagccagccaaaaggctccaggcatcattgtcctttagttaatccgt
gcttaattcaccccaaatcattgcctgtttctaaaacctgaagcctgtca
cttatattttgtgcagtagttccaaagtttcagataatttgtatttttcc
ttttgtgtgtgtatgagtcatgtcggaggtttatccgctttattaatctt
ttctaataactaaccttttaaaattgctttttctttattggcattctaaa
attcaacattaccagtttctggccatccttctgtttaaaaacagcccatt
tcagtgttgttttccctgaatttgtctggttcaggtatcattagattttt
ttttaatgtaaattcttatgcctttgccaaatttacagttttttacacat
tattccttttagtactctcttagttctgctttatttcttcattttgagat
tccgttccaaacaaacaaacaaacaaacaaacaaacatcttgctatatat
acacatataggtacatgtacatatctaatattatatattgcatgcatata
acatttattgtccacaggttttttgagtctgtattttcctgtctgttgtc
ctttgattgttcaaattgactgtcctgccttcttcaattttaccaattca
ttctcccattttttaaaattctgcctcatagggtcatttattgactttcc
ggtaattcttcttttcagttctaacgttccacatagtatttatactttta
tcagtatatatttcattacttccattccttaaggatttccggt

gaattcttttatctgtagtcaaactaaggtgacattcagccacaatgtgg
caaagaaaaaatagacttcaaattaatgtttgattaagatccagttcagc
agagaaattgattgcatcactggtgaacaatcaggtatttatatgggcat
tagtgaatagttaacagaatcacagtggccccaaaatggcacagatgttt
ttcataacaagaaacatccttgcttacagacctaagaggataagagaaca
acagtgtatggtcaaatgagatgggatagcatgggttccataacctgcct
actacagtttgctatatatcagctatgctacagcaggaaaagataagaca
tttgtaaatgataatattctaccggggaacactgcatagctctgtattga
gaaaaggagatgggtaagggcttaaatttattttaactcctaaggcagta
acagaacctttatggaggaagaagaggttgcaggctaggcattccttcaa
gaaccaagtatgttactgactacacacagattctatgtctgaagtgggag
tggcatgacagttgttgaattatgatttcagagcacatcagtctgagtag
acaggtgacttccatgactcattttctcactgatatcagagctgcatgtt
aaagattacaactacttcctcctatacagtttaatacatgattaaacata
tcatagtccagggctggtattaacatcactatagtcaatacattgtataa
acagcattggaaggaggcaaaataaaatattaaaagcctgggattatccc
caccacgatatcctaaatgacatttgtaagcctcaacttcctcatctagg
agggataatataattgctctctaataagattgccaaggcatttagcagtt
actatggaccatgcatccctagcacagagtttgtatactgtagcacttag
catatgttttacagctattagcaccatacacataacatttctagtaacaa
aacgaatttgcaggattttacatttacttgtcttgggccaatgtgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3273610_3274606
seq2: B6Ng01-145F21.b_45_1035

seq1  GAATTCCTTAGTGGAACTATTTTGGGAAGTGTGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTGGAACTATTTTGGGAAGTGTGTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGTGTAAATACATGTTCATGTATAAGTGTATGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTAAATACATGTTCATGTATAAGTGTATGCACAC  100

seq1  GTGGGGGGCAGAAGCCAAAGATGGATGTCTTTCACAGTCATTCTCCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGCAGAAGCCAAAGATGGATGTCTTTCACAGTCATTCTCCACCT  150

seq1  TAGTTTTTGAGAGACTGCATAACTGAACTTGGAGCTCAACAATTTGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGAGAGACTGCATAACTGAACTTGGAGCTCAACAATTTGGTTC  200

seq1  CCTCAGCCAGCCAAAAGGCTCCAGGCATCATTGTCCTTTAGTTAATCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCAGCCAAAAGGCTCCAGGCATCATTGTCCTTTAGTTAATCCGT  250

seq1  GCTTAATTCACCCCAAATCATTGCCTGTTTCTAAAACCTGAAGCCTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTCACCCCAAATCATTGCCTGTTTCTAAAACCTGAAGCCTGTCA  300

seq1  CTTATATTTTGTGCAGTAGTTCCAAAGTTTCAGATAATTTGTATTTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTTGTGCAGTAGTTCCAAAGTTTCAGATAATTTGTATTTTTCC  350

seq1  TTTTGTGTGTGTATGAGTCATGTCGGAGGTTTATCCGCTTTATTAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGTGTATGAGTCATGTCGGAGGTTTATCCGCTTTATTAATCTT  400

seq1  TTCTAATAACTAACCTTTTAAAATTGCTTTTTCTTTATTGGCATTCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAACTAACCTTTTAAAATTGCTTTTTCTTTATTGGCATTCTAAA  450

seq1  ATTCAACATTACCAGTTTCTGGCCATCCTTCTGTTTAAAAACAGCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACATTACCAGTTTCTGGCCATCCTTCTGTTTAAAAACAGCCCATT  500

seq1  TCAGTGTTGTTTTCCCTGAATTTGTCTGGTTCAGGTATCATTAGATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTGTTTTCCCTGAATTTGTCTGGTTCAGGTATCATTAGATTTTT  550

seq1  TTTTAATGTAAATTCTTATGCCTTTGCCAAATTTACAGTTTTTTACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTAAATTCTTATGCCTTTGCCAAATTTACAGTTTTTTACACAT  600

seq1  TATTCCTTTTAGTACTCTCTTAGTTCTGCTTTATTTCTTCATTTTGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTTTAGTACTCTCTTAGTTCTGCTTTATTTCTTCATTTTGAGAT  650

seq1  TCCGTTCCAAACAAACAAACAAACAAACAAACAAACATCTTGCTATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTCCAAACAAACAAACAAACAAACAAACAAACATCTTGCTATATAT  700

seq1  ACACATATAGGTACATGTACATATCTAATATTATATA-TGCATGCATATA  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACACATATAGGTACATGTACATATCTAATATTATATATTGCATGCATATA  750

seq1  ACATTTATTGTCCACAGG-TTTTTGAGTCTGTATTTTCCTGTCTGTTGTC  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACATTTATTGTCCACAGGTTTTTTGAGTCTGTATTTTCCTGTCTGTTGTC  800

seq1  CTTTGATTGTTCAAATTGACTGT-CTGCCTTCTTCAATTTTACCAATTCA  847
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTTGATTGTTCAAATTGACTGTCCTGCCTTCTTCAATTTTACCAATTCA  850

seq1  TTCTCCCA-TTTTTAAAATTCTGCCTCATAGGGTCAATTTATTGACTTTT  896
      |||||||| |||||||||||||||||||||||||| ||||||||||||| 
seq2  TTCTCCCATTTTTTAAAATTCTGCCTCATAGGGTC-ATTTATTGACTTTC  899

seq1  CGGTTAATTCTTCTTTTCAGTTCTAAACGTTCCACATAGTTATTTATACT  946
      ||| |||||||||||||||||||| |||||||||||||| ||||||||| 
seq2  CGG-TAATTCTTCTTTTCAGTTCT-AACGTTCCACATAG-TATTTATAC-  945

seq1  TTTTATCATGTATTATATTTCATTACTTCTCATTTCCTTAATGGATTTCT  996
      |||||||| ||| |||||||||||||||| || |||||||| ||||||| 
seq2  TTTTATCA-GTA-TATATTTCATTACTTC-CA-TTCCTTAA-GGATTTCC  990

seq1  G  997
      |
seq2  G  991


seq1: chr6_3418393_3419446
seq2: B6Ng01-145F21.g_69_1118 (reverse)

seq1  CCCCACAC--TTGCCCAAGACAATGTAAATGTAAAATCCCTGCAAATTTC  48
      ||||||||  | ||||||||||| ||||||||||||| |||||||| |||
seq2  CCCCACACATTGGCCCAAGACAA-GTAAATGTAAAAT-CCTGCAAA-TTC  47

seq1  GTTTTGTTACTAGAAATGTATTGTGTATGGTGCTAATAGCTGTAAAACAT  98
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  GTTTTGTTACTAGAAATGTTATGTGTATGGTGCTAATAGCTGTAAAACAT  97

seq1  ATGCTAAGTGCTTACAGTATACCAAACTCTGTGCTAGGGATGCATGGTCC  148
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  ATGCTAAGTGC-TACAGTATA-CAAACTCTGTGCTAGGGATGCATGGTCC  145

seq1  ATAGTAACTGCTAAATTGCCTTGGCAATCTTATTAGAGAGCAATTATATT  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTGCTAAA-TGCCTTGGCAATCTTATTAGAGAGCAATTATATT  194

seq1  ATCCCTCCTAGATGAGGAAGTTGAGGCTTACAAATGTCATTTAGGATATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCTAGATGAGGAAGTTGAGGCTTACAAATGTCATTTAGGATATC  244

seq1  GTGGTGGGGATAATCCCAGGCTTTTAATATTTTATTTTGCCTCCTTCCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGGATAATCCCAGGCTTTTAATATTTTATTTTGCCTCCTTCCAA  294

seq1  TGCTGTTTATACAATGTATTGACTATAGTGATGTTAATACCAGCCCTGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTATACAATGTATTGACTATAGTGATGTTAATACCAGCCCTGGA  344

seq1  CTATGATATGTTTAATCATGTATTAAACTGTATAGGAGGAAGTAGTTGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATGTTTAATCATGTATTAAACTGTATAGGAGGAAGTAGTTGTA  394

seq1  ATCTTTAACATGCAGCTCTGATATCAGTGAGAAAATGAGTCATGGAAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAACATGCAGCTCTGATATCAGTGAGAAAATGAGTCATGGAAGTC  444

seq1  ACCTGTCTACTCAGACTGATGTGCTCTGAAATCATAATTCAACAACTGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTACTCAGACTGATGTGCTCTGAAATCATAATTCAACAACTGTC  494

seq1  ATGCCACTCCCACTTCAGACATAGAATCTGTGTGTAGTCAGTAACATACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTCCCACTTCAGACATAGAATCTGTGTGTAGTCAGTAACATACT  544

seq1  TGGTTCTTGAAGGAATGCCTAGCCTGCAACCTCTTCTTCCTCCATAAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTGAAGGAATGCCTAGCCTGCAACCTCTTCTTCCTCCATAAAGG  594

seq1  TTCTGTTACTGCCTTAGGAGTTAAAATAAATTTAAGCCCTTACCCATCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTACTGCCTTAGGAGTTAAAATAAATTTAAGCCCTTACCCATCTC  644

seq1  CTTTTCTCAATACAGAGCTATGCAGTGTTCCCCGGTAGAATATTATCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCAATACAGAGCTATGCAGTGTTCCCCGGTAGAATATTATCATT  694

seq1  TACAAATGTCTTATCTTTTCCTGCTGTAGCATAGCTGATATATAGCAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTCTTATCTTTTCCTGCTGTAGCATAGCTGATATATAGCAAAC  744

seq1  TGTAGTAGGCAGGTTATGGAACCCATGCTATCCCATCTCATTTGACCATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGGCAGGTTATGGAACCCATGCTATCCCATCTCATTTGACCATA  794

seq1  CACTGTTGTTCTCTTATCCTCTTAGGTCTGTAAGCAAGGATGTTTCTTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGTTCTCTTATCCTCTTAGGTCTGTAAGCAAGGATGTTTCTTGT  844

seq1  TATGAAAAACATCTGTGCCATTTTGGGGCCACTGTGATTCTGTTAACTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAACATCTGTGCCATTTTGGGGCCACTGTGATTCTGTTAACTAT  894

seq1  TCACTAATGCCCATATAAATACCTGATTGTTCACCAGTGATGCAATCAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATGCCCATATAAATACCTGATTGTTCACCAGTGATGCAATCAAT  944

seq1  TTCTCTGCTGAACTGGATCTTAATCAAACATTAATTTGAAGTCTATTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTGAACTGGATCTTAATCAAACATTAATTTGAAGTCTATTTTT  994

seq1  TCTTTGCCACATTGTGGCTGAATGTCACCTTAGTTTGACTACAGATAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCACATTGTGGCTGAATGTCACCTTAGTTTGACTACAGATAAAA  1044

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1050


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