BAC Information

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BAC

Clone NameB6Ng01-146E13
Chromosome6 (Build37)
Map Location 117,044,361 - 117,170,324
singlet/doubletdoublet
Overlap geneCxcl12, LOC213422
Upstream geneTmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439
Downstream geneEG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146E13.bB6Ng01-146E13.g
ACCDH943466DH943467
length1,155940
definitionDH943466|Mus musculus domesticus DNA, BAC clone: B6Ng01-146E13, 5' end.DH943467|Mus musculus domesticus DNA, BAC clone: B6Ng01-146E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,044,361 - 117,045,537)(117,169,390 - 117,170,324)
sequence
gaattccatgagtcctgtttaccatttgcattgttgtccctcccttcccc
cttcgaactcctcccacaaccgccctgccccgctcctcccacaacagccc
cgccccgccccgctccgccccagtccctctcttactgtgttagcatcttc
ctcattcaatattgttgttgtatctatggtgttataattttcacttcagt
catcaaattcaatttctgaagcttcagtaaataaggagtatgcatttcag
ttctttccctttttcttcccatgcctcgtggttctctttttctgtttgtg
tgttgtctgcagaaattcctaaacccaggactcacgggcagcactgcgaa
tggctacgtttcttcgttttacctctatagcttcattcccaaataatctt
gcaaagcacagacttgccagctgagacctttttttccttctgatctatga
aattagctgccagtcccttgatttaaaaaccactcctgcaacctggaatc
aaagtggaattcctcaagaaagagaaattgaaagcctgcagtgggcacat
aagagactcagtgcttttacagtaacccaagaagggaccggaggctggct
gtccccatcatgccgctctgagcagtgctgtacgtgagtgggtacaagtc
atgcctgacttacgatggaagacttatgtgtaaatgtcacaaaatctaca
agcatgaagagtcccgacttagattaactgaattcaccagagcatcggta
tgcagaaaaatcaactatatgtctacatatcaataatgaaaaaatccaaa
gataaaatcaaaatgccagttctgactattttggttgagaagggataaaa
cagtaagaagtaaattttgatcaagacatagaagatacatgttatactct
ggattgcgaaatacagccgaatatagacctcataagctggaaacaatctt
gtgctttagattaggaatgcttgacctataaaattgcattatgtcccaaa
tcatctggatatttgaatgcagtactgtgaaataaaagtgagtttcaata
atttataataaggaaccacttttcctataactataaggcccaacaatcct
gaaaaaatggaaagtggaagaatcatttcctacttctaatcacctaaaat
ctgca
gaattcccagtaaagaatgcaaagaaacagaaagatctgcttatgtgcag
tggacccttgaactggtttttttaatgttctttgctgaattggaacagca
gccagctaggagtggccggaaagagaatggcatctgtagggctccacatg
ggggcatggagctgggcaagggagtgttctgcttagagccaaggacccta
caggggtgacagaaggtgacagggaaggaagaagggaggatgctgcgcgt
gcacagcccccactgctctccagccgcgcccttactctgactctttgtga
ttcacacagtttgagacatgcaaggcagatcttcaatccatttcttaagt
gacccagagtgcctaaaaatgggattttacaatatcataaacttaatgcc
tgaatcccaattctaaactccaagctgtgtttttctctatctcacagaag
gacaaagaaggaaaaggccagagagcaggccatgactccattcttggatc
cttgtgcctactaggtgcacaacaaagacctttgattgtgttctaagggt
cttgtacctactttgtgcacaacaactttttgaatgaatacatgatggat
aacaacaagagatttttttaaaagtagcaagtgcgttatgccaagaatgt
tttcaatttccagggttctgtcatttatcttagtttttaaaacagtttgc
atatgtggcttatgaaagtcagtggtgcagttcagaaacagagaaactgc
gtgacccagccatgctttgccaaaggcaaattgcagagtaggtaggttga
tactatgggcaggaaatcatccctgtaaccgaccctagagtttttatgct
ctgactcttgaacaatatggtccagagattcagaaaaatgttgagttggg
gagtttttagggggcagtggagggttggttctcactcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117044361_117045537
seq2: B6Ng01-146E13.b_48_1202

seq1  GAATTCCATGAGTCCTGTTTACCATTTGCATTGTTGTCCCTCCCTTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGTCCTGTTTACCATTTGCATTGTTGTCCCTCCCTTCCCC  50

seq1  CTTCGAACTCCTCCCACAACCGCCCTGCCCCGCTCCTCCCACAACAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAACTCCTCCCACAACCGCCCTGCCCCGCTCCTCCCACAACAGCCC  100

seq1  CGCCCCGCCCCGCTCCGCCCCAGTCCCTCTCTTACTGTGTTAGCATCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCGCCCCGCTCCGCCCCAGTCCCTCTCTTACTGTGTTAGCATCTTC  150

seq1  CTCATTCAATATTGTTGTTGTATCTATGGTGTTATAATTTTCACTTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCAATATTGTTGTTGTATCTATGGTGTTATAATTTTCACTTCAGT  200

seq1  CATCAAATTCAATTTCTGAAGCTTCAGTAAATAAGGAGTATGCATTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATTCAATTTCTGAAGCTTCAGTAAATAAGGAGTATGCATTTCAG  250

seq1  TTCTTTCCCTTTTTCTTCCCATGCCTCGTGGTTCTCTTTTTCTGTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCCTTTTTCTTCCCATGCCTCGTGGTTCTCTTTTTCTGTTTGTG  300

seq1  TGTTGTCTGCAGAAATTCCTAAACCCAGGACTCACGGGCAGCACTGCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTGCAGAAATTCCTAAACCCAGGACTCACGGGCAGCACTGCGAA  350

seq1  TGGCTACGTTTCTTCGTTTTACCTCTATAGCTTCATTCCCAAATAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACGTTTCTTCGTTTTACCTCTATAGCTTCATTCCCAAATAATCTT  400

seq1  GCAAAGCACAGACTTGCCAGCTGAGACCTTTTTTTCCTTCTGATCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCACAGACTTGCCAGCTGAGACCTTTTTTTCCTTCTGATCTATGA  450

seq1  AATTAGCTGCCAGTCCCTTGATTTAAAAACCACTCCTGCAACCTGGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTGCCAGTCCCTTGATTTAAAAACCACTCCTGCAACCTGGAATC  500

seq1  AAAGTGGAATTCCTCAAGAAAGAGAAATTGAAAGCCTGCAGTGGGCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAATTCCTCAAGAAAGAGAAATTGAAAGCCTGCAGTGGGCACAT  550

seq1  AAGAGACTCAGTGCTTTTACAGTAACCCAAGAAGGGACCGGAGGCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTCAGTGCTTTTACAGTAACCCAAGAAGGGACCGGAGGCTGGCT  600

seq1  GTCCCCATCATGCCGCTCTGAGCAGTGCTGTACGTGAGTGGGTACAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATCATGCCGCTCTGAGCAGTGCTGTACGTGAGTGGGTACAAGTC  650

seq1  ATGCCTGACTTACGATGGAAGACTTATGTGTAAATGTCACAAAATCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGACTTACGATGGAAGACTTATGTGTAAATGTCACAAAATCTACA  700

seq1  AGCATGAAGAGTCCCGACTTAGATTAACTGAATTCACCAGAGCAATCGGT  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCATGAAGAGTCCCGACTTAGATTAACTGAATTCACCAGAGC-ATCGGT  749

seq1  ATGCAGAAAAATCAACTATATGTCTACATATCAATAATGAAAAAAATCCA  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGCAGAAAAATCAACTATATGTCTACATATCAATAATG-AAAAAATCCA  798

seq1  AAGATAAAATCAAAATGCCAGTTCTGACTATTTTGGTATGAGAAGGGATA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGATAAAATCAAAATGCCAGTTCTGACTATTTTGGT-TGAGAAGGGATA  847

seq1  AAACAGTAAGAAGTAAA-TTTGATCAAGACATAGAAGATACATGTTATAC  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAACAGTAAGAAGTAAATTTTGATCAAGACATAGAAGATACATGTTATAC  897

seq1  CCTGAATTGCGAAATACAGCCGAAATATAGACCTCAATAAGCTGGAAACA  949
       ||| ||||||||||||||||| |||||||||||| ||||||||||||||
seq2  TCTGGATTGCGAAATACAGCCG-AATATAGACCTC-ATAAGCTGGAAACA  945

seq1  CATCTTGTGCTTTTAGATTAGGAATGCTTGACCTTATAAAATTGCATTAT  999
       ||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  -ATCTTGTGC-TTTAGATTAGGAATGCTTGACC-TATAAAATTGCATTAT  992

seq1  GTCCCAAATTCATCTGCATA-TTGAATGCAGTTACTGTTGAAATAAAAGT  1048
      |||||||| ||||||| ||| |||||||||| ||||| ||||||||||||
seq2  GTCCCAAA-TCATCTGGATATTTGAATGCAG-TACTG-TGAAATAAAAGT  1039

seq1  AGATCTCAAAATATTTTAATAAAAATGAACACACTTTTCCTATAGACTTA  1098
         | ||  |||| ||| |||| || |||| ||||||||||||| || ||
seq2  GAGTTTC--AATAATTT-ATAATAAGGAAC-CACTTTTCCTATA-AC-TA  1083

seq1  TAATGCCCCCAACAATCCTGAAAAAATATGAAAGTTGGAAGATTCATTTC  1148
      ||| |  ||||||||||||||||||||  ||||| ||||||| |||||||
seq2  TAAGG--CCCAACAATCCTGAAAAAAT-GGAAAG-TGGAAGAATCATTTC  1129

seq1  CTTACTTCTAAACTTACTAAAAATCTGCA  1177
      | |||||||||  | ||  ||||||||||
seq2  C-TACTTCTAA--TCACCTAAAATCTGCA  1155

seq1: chr6_117169390_117170324
seq2: B6Ng01-146E13.g_73_1012 (reverse)

seq1  AAAGAGTGAGAGCC-ACCCT-CACTGCCCCCTAAAAACT-CACAACACAA  47
      ||||||||||| || ||||| |||||||||||||||||| | |||| |||
seq2  AAAGAGTGAGAACCAACCCTCCACTGCCCCCTAAAAACTCCCCAACTCAA  50

seq1  CATTTCTCTGAATCTCTGAGCCATATTGCTCAAGAGTCAGAGCATAAACA  97
      ||||| ||||||||||||  |||||||| ||||||||||||||||||| |
seq2  CATTTTTCTGAATCTCTGGACCATATTGTTCAAGAGTCAGAGCATAAA-A  99

seq1  GCTCTCTGGGTCGGGTTACAGGGCTGGTTTCCTG-CCATAGTATCAACCT  146
       ||||  ||||| |||||||||| || ||||||| |||||||||||||||
seq2  ACTCT-AGGGTC-GGTTACAGGGATGATTTCCTGCCCATAGTATCAACCT  147

seq1  ACCTACTCTGCATTTTGCCTTTGGCAAAGCATGGCTGGGTCACGCAGTTT  196
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCTACTCTGCAATTTGCCTTTGGCAAAGCATGGCTGGGTCACGCAGTTT  197

seq1  CTCTGTTTCTGAACTGCACCACTGACTTTCATAAGCCACATATGCAGACT  246
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTGTTTCTGAACTGCACCACTGACTTTCATAAGCCACATATGCAAACT  247

seq1  GTTTTAAAAACTAAGATAAATGACAGAA-CCTGGAAATTGAAAACATTCT  295
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTTTAAAAACTAAGATAAATGACAGAACCCTGGAAATTGAAAACATTCT  297

seq1  TGGCATAACGCACTTGCTACTTTT-AAAAAATCTCTTGTTGTTATCCATC  344
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGCATAACGCACTTGCTACTTTTAAAAAAATCTCTTGTTGTTATCCATC  347

seq1  ATGTATTCATTC-AAAAGTTGTTGTGCACAAAGTAGGTACAAGACCCTTA  393
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCATTCAAAAAGTTGTTGTGCACAAAGTAGGTACAAGACCCTTA  397

seq1  GAACACAATC-AAGGTCTTTGTTGTGCACCTAGTAGGCACAAGGATCCAA  442
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAACACAATCAAAGGTCTTTGTTGTGCACCTAGTAGGCACAAGGATCCAA  447

seq1  GAATGGAGTCATGGCCTGCTCTCTGGCCTTTTCCTTCTTTGTCCTTCTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGTCATGGCCTGCTCTCTGGCCTTTTCCTTCTTTGTCCTTCTGT  497

seq1  GAGATAGAGAAAAACACAGCTTGGAGTTTAGAATTGGGATTCAGGCATTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGAGAAAAACACAGCTTGGAGTTTAGAATTGGGATTCAGGCATTA  547

seq1  AGTTTATGATATTGTAAAATCCCATTTTTAGGCACTCTGGGTCACTTAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGATATTGTAAAATCCCATTTTTAGGCACTCTGGGTCACTTAAG  597

seq1  AAATGGATTGAAGATCTGCCTTGCATGTCTCAAACTGTGTGAATCACAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTGAAGATCTGCCTTGCATGTCTCAAACTGTGTGAATCACAAA  647

seq1  GAGTCAGAGTAAGGGCGCGGCTGGAGAGCAGTGGGGGCTGTGCACGCGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGTAAGGGCGCGGCTGGAGAGCAGTGGGGGCTGTGCACGCGCA  697

seq1  GCATCCTCCCTTCTTCCTTCCCTGTCACCTTCTGTCACCCCTGTAGGGTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCCCTTCTTCCTTCCCTGTCACCTTCTGTCACCCCTGTAGGGTC  747

seq1  CTTGGCTCTAAGCAGAACACTCCCTTGCCCAGCTCCATGCCCCCATGTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCTAAGCAGAACACTCCCTTGCCCAGCTCCATGCCCCCATGTGG  797

seq1  AGCCCTACAGATGCCATTCTCTTTCCGGCCACTCCTAGCTGGCTGCTGTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTACAGATGCCATTCTCTTTCCGGCCACTCCTAGCTGGCTGCTGTT  847

seq1  CCAATTCAGCAAAGAACATTAAAAAAACCAGTTCAAGGGTCCACTGCACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCAGCAAAGAACATTAAAAAAACCAGTTCAAGGGTCCACTGCACA  897

seq1  TAAGCAGATCTTTCTGTTTCTTTGCATTCTTTACTGGGAATTC  935
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGATCTTTCTGTTTCTTTGCATTCTTTACTGGGAATTC  940