BAC Information

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BAC

Clone NameB6Ng01-147I21
Chromosome6 (Build37)
Map Location 144,598,645 - 144,753,204
singlet/doubletdoublet
Overlap gene4933425H06Rik, EG665149
Upstream geneSox5
Downstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147I21.bB6Ng01-147I21.g
ACCDH944403DH944404
length6221,102
definitionDH944403|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I21, 5' end.DH944404|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,598,645 - 144,599,266)(144,752,100 - 144,753,204)
sequence
gaattcacatcgccagccagtgggactgtttgcaaacgagaccaactgat
cctgtcatatctctaggagacaatttacttctttacataaactaggtccc
taaagagaaaacaaaggactggttctgctgctgtcagtcaagtgtctgtt
ttgtttggcgcgtaaagggctctagcaggagggatatactgtcgtatctg
agagatgtgtgctgaggaagatctggttggctatgggaggttggttatgc
ttggcctggcaggcggcccaagctacatagtagtcaatctgggctcaaag
cagaccatactgaccatgatcagggtgactggctgacactcaagtttcct
tcagtagaaaaactgtgtagatgaagcatagaagtcagctttcccgctag
ctgacctatgtggcacttcagaggatggatacaaaaaaaatgcagtgtcc
tgcccttaaaggagagctttgctcgtccacgttacaaatgcatcccatta
atttagcatccagggaaggagagattgaccatgtctttgcactgaccctg
cttcccaacacaaagaccctgcagtctttaaaatgggtatattgtccaag
ggggttgatgtgtggggatgga
gaattcccttccttccccaccttggtggtttgttagaatctctggtaatt
gatcagatcttcattttctttgatctttgaacatactcgtttcaattcat
gactcataagacctcaaataagcatacgcaataaggttttgaggcgagat
ctgtaatctgcccagtgacagaggaacagtgtgtacctcaccaaaccacg
tccaaaatggctcagtgccagaaacagctcttggtggaaggtggagttac
tcacaagctaggagcagggccctgtgatgccttctgttttgattaaaatg
caatttggctaactagttcagttattgttgcagaattgcttttcagaaat
atattaatttatcgatctgtgtgaggagtttatggacacctcatgcatgt
agtaccctcagatgccagaagagggcattgcatctcctggaattggagat
acaggtggttgtgcacagccatgtgagtgctgggaactgaacttgggttt
tctgaaagagcggtaactgctctccatcattgagccatctgtctagcctt
taagagttgctttttagaaggattttaaacaactttaatttttgcttttc
aaccttgatcaagtggtgaaataaaatcctcaataaaatacgaaattctt
aaaaattttaacaatggtctctttaaaaaaaattcaacaggatagtaaga
tactcagtttattcatcaaatcaaacttggtgtacagtgataaggagtat
gacaaaggccctttctctcttaaaatggtgaaaccaagccagaattccct
gcagcaatatgagtccagttttggaatgtttacattttggtggaagaggg
tagttatcttttgccgggtttttagagggcctctgtatttgccagtggat
gtggtagaacctcttggtaataaaagtagaagaactaagtgtttaatgtt
tattattatacaattctttagctatcctgttttcactaatgctcttggtg
ctcctgaaaataaactcactgccaagtttgatcaaaaggttagcttagcc
tgtccccaagaggcattgctggggttgctggcggtgaccctatgtataag
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144598645_144599266
seq2: B6Ng01-147I21.b_45_666

seq1  GAATTCACATCGCCAGCCAGTGGGACTGTTTGCAAACGAGACCAACTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCGCCAGCCAGTGGGACTGTTTGCAAACGAGACCAACTGAT  50

seq1  CCTGTCATATCTCTAGGAGACAATTTACTTCTTTACATAAACTAGGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATATCTCTAGGAGACAATTTACTTCTTTACATAAACTAGGTCCC  100

seq1  TAAAGAGAAAACAAAGGACTGGTTCTGCTGCTGTCAGTCAAGTGTCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAAAACAAAGGACTGGTTCTGCTGCTGTCAGTCAAGTGTCTGTT  150

seq1  TTGTTTGGCGCGTAAAGGGCTCTAGCAGGAGGGATATACTGTCGTATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGCGCGTAAAGGGCTCTAGCAGGAGGGATATACTGTCGTATCTG  200

seq1  AGAGATGTGTGCTGAGGAAGATCTGGTTGGCTATGGGAGGTTGGTTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTGTGCTGAGGAAGATCTGGTTGGCTATGGGAGGTTGGTTATGC  250

seq1  TTGGCCTGGCAGGCGGCCCAAGCTACATAGTAGTCAATCTGGGCTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGGCAGGCGGCCCAAGCTACATAGTAGTCAATCTGGGCTCAAAG  300

seq1  CAGACCATACTGACCATGATCAGGGTGACTGGCTGACACTCAAGTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCATACTGACCATGATCAGGGTGACTGGCTGACACTCAAGTTTCCT  350

seq1  TCAGTAGAAAAACTGTGTAGATGAAGCATAGAAGTCAGCTTTCCCGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAAAAACTGTGTAGATGAAGCATAGAAGTCAGCTTTCCCGCTAG  400

seq1  CTGACCTATGTGGCACTTCAGAGGATGGATACAAAAAAAATGCAGTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTATGTGGCACTTCAGAGGATGGATACAAAAAAAATGCAGTGTCC  450

seq1  TGCCCTTAAAGGAGAGCTTTGCTCGTCCACGTTACAAATGCATCCCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTAAAGGAGAGCTTTGCTCGTCCACGTTACAAATGCATCCCATTA  500

seq1  ATTTAGCATCCAGGGAAGGAGAGATTGACCATGTCTTTGCACTGACCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCATCCAGGGAAGGAGAGATTGACCATGTCTTTGCACTGACCCTG  550

seq1  CTTCCCAACACAAAGACCCTGCAGTCTTTAAAATGGGTATATTGTCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAACACAAAGACCCTGCAGTCTTTAAAATGGGTATATTGTCCAAG  600

seq1  GGGGTTGATGTGTGGGGATGGA  622
      ||||||||||||||||||||||
seq2  GGGGTTGATGTGTGGGGATGGA  622

seq1: chr6_144752100_144753204
seq2: B6Ng01-147I21.g_70_1171 (reverse)

seq1  TACTGATACATAGGTGTCACCG-CAGCCACACCAGCAATGCCTC-TGGGG  48
      |||| ||||||||| ||||||| |||| || ||||||||||||| |||||
seq2  TACTTATACATAGG-GTCACCGCCAGCAACCCCAGCAATGCCTCTTGGGG  49

seq1  ACAAGCTAAGCTAACCTTTTGATCAAACCTTGGCAGTGAGTAT-TTTTCA  97
      ||| ||||||||||||||||||||||| ||||||||||||| | ||||||
seq2  ACAGGCTAAGCTAACCTTTTGATCAAA-CTTGGCAGTGAGTTTATTTTCA  98

seq1  GGAAGCACCAAGAGCATTTAGTGAAAACAGGATAGCCTAAAGAATTGTAT  147
      || ||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  GG-AGCACCAAGAGCA-TTAGTGAAAACAGGATAG-CTAAAGAATTGTAT  145

seq1  AATAATAAACATTAAACACTTAGTTTCTTCTACTTTTATTACCAAGAGGT  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATAATAAACATTAAACACTTAG-TTCTTCTACTTTTATTACCAAGAGGT  194

seq1  TCTACCACATCCACTGGCAAATACAGAGGCCCTCTAAAAACCCGGCAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACATCCACTGGCAAATACAGAGGCCCTCTAAAAACCCGGCAAAA  244

seq1  GATAACTACCCTCTTCCACCAAAATGTAAACATTCCAAAACTGGACTCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTACCCTCTTCCACCAAAATGTAAACATTCCAAAACTGGACTCAT  294

seq1  ATTGCTGCAGGGAATTCTGGCTTGGTTTCACCATTTTAAGAGAGAAAGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCAGGGAATTCTGGCTTGGTTTCACCATTTTAAGAGAGAAAGGG  344

seq1  CCTTTGTCATACTCCTTATCACTGTACACCAAGTTTGATTTGATGAATAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCATACTCCTTATCACTGTACACCAAGTTTGATTTGATGAATAA  394

seq1  ACTGAGTATCTTACTATCCTGTTGAATTTTTTTTAAAGAGACCATTGTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTATCTTACTATCCTGTTGAATTTTTTTTAAAGAGACCATTGTTA  444

seq1  AAATTTTTAAGAATTTCGTATTTTATTGAGGATTTTATTTCACCACTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAAGAATTTCGTATTTTATTGAGGATTTTATTTCACCACTTGA  494

seq1  TCAAGGTTGAAAAGCAAAAATTAAAGTTGTTTAAAATCCTTCTAAAAAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTGAAAAGCAAAAATTAAAGTTGTTTAAAATCCTTCTAAAAAGC  544

seq1  AACTCTTAAAGGCTAGACAGATGGCTCAATGATGGAGAGCAGTTACCGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTAAAGGCTAGACAGATGGCTCAATGATGGAGAGCAGTTACCGCT  594

seq1  CTTTCAGAAAACCCAAGTTCAGTTCCCAGCACTCACATGGCTGTGCACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAAAACCCAAGTTCAGTTCCCAGCACTCACATGGCTGTGCACAA  644

seq1  CCACCTGTATCTCCAATTCCAGGAGATGCAATGCCCTCTTCTGGCATCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTATCTCCAATTCCAGGAGATGCAATGCCCTCTTCTGGCATCTG  694

seq1  AGGGTACTACATGCATGAGGTGTCCATAAACTCCTCACACAGATCGATAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTACATGCATGAGGTGTCCATAAACTCCTCACACAGATCGATAA  744

seq1  ATTAATATATTTCTGAAAAGCAATTCTGCAACAATAACTGAACTAGTTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATATTTCTGAAAAGCAATTCTGCAACAATAACTGAACTAGTTAG  794

seq1  CCAAATTGCATTTTAATCAAAACAGAAGGCATCACAGGGCCCTGCTCCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGCATTTTAATCAAAACAGAAGGCATCACAGGGCCCTGCTCCTA  844

seq1  GCTTGTGAGTAACTCCACCTTCCACCAAGAGCTGTTTCTGGCACTGAGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAGTAACTCCACCTTCCACCAAGAGCTGTTTCTGGCACTGAGCC  894

seq1  ATTTTGGACGTGGTTTGGTGAGGTACACACTGTTCCTCTGTCACTGGGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGACGTGGTTTGGTGAGGTACACACTGTTCCTCTGTCACTGGGCA  944

seq1  GATTACAGATCTCGCCTCAAAACCTTATTGCGTATGCTTATTTGAGGTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGATCTCGCCTCAAAACCTTATTGCGTATGCTTATTTGAGGTCT  994

seq1  TATGAGTCATGAATTGAAACGAGTATGTTCAAAGATCAAAGAAAATGAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCATGAATTGAAACGAGTATGTTCAAAGATCAAAGAAAATGAAG  1044

seq1  ATCTGATCAATTACCAGAGATTCTAACAAACCACCAAGGTGGGGAAGGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCAATTACCAGAGATTCTAACAAACCACCAAGGTGGGGAAGGAA  1094

seq1  GGGAATTC  1105
      ||||||||
seq2  GGGAATTC  1102