BAC Information

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BAC

Clone NameB6Ng01-147K15
Chromosome6 (Build37)
Map Location 105,232,493 - 105,379,855
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn6, LOC384470
Downstream geneLOC100043716, LOC100043350, Cntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147K15.bB6Ng01-147K15.g
ACCDH944482DH944483
length1,073777
definitionDH944482|Mus musculus domesticus DNA, BAC clone: B6Ng01-147K15, 5' end.DH944483|Mus musculus domesticus DNA, BAC clone: B6Ng01-147K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,378,774 - 105,379,855)(105,232,493 - 105,233,269)
sequence
gaattcagcctacacagttccaataaccatattttgatctctcgatggcc
gctcgtggacgtatagtaaaataaactttctagaatactagaacagtagt
agaatacagcacaagggaatgagtgtaaacttgctgatcaaagaatcaac
ggtaaattggtttttatctattaaattgatttacatgtatatatattaaa
tataaagtgtgggctttagagaatattgaatattgcatattttctctgat
atgtgaaaactatctatcatttatcagatacttttacatatgtcattaaa
gcacacagaaaaagacagaaacagagagactgagacaaaggcagaaacac
agaaggaggcatagacagagaaatggaaatggatttccttaagcttcaga
gacaagagcagcaggacataaagatcgaaagaaataaatatcccaggacc
tgcaatcactacttcacagctggggcacatggtgtctccttatttaggaa
tgaaattgagagaaagagtcctagaaacttttcttggtgagtcagtggta
atactaatgagtgaaaaagtttaacacacctcatatcttccagcctacag
aggatagataactcaatatacatgcagtagctttgctttcagaaagattt
tgcatcaacctcagcaagcacccacaatgagcacccaggacccaccttga
gaaataaaatactaaatgagtttgactgagagcaaagcccagaaacccac
tctactgataaggacagtagctgtctggtaagaccaatttagcctgcctt
cctaggaccactgtattataagggacagaagttacaccagagggcaatag
atatttatgaccttgaaccctactgctgcctcagccacagagcctccaga
cagagttcttttcattcttggtctatccacaaaaatgtaagtttgcagag
tatggagtcagcagaaatcttgcctggctctggatgagcctgctaccatc
tatcccatgtgggcactcagattaagagttgcaagggaagtcctcatcat
ccttgatgtggcttaaaggccga
gaattctttatattccggtaggtctctgtggtctctgtgtagggcttaga
cctcctgggatttctcccctccatgttagaattccgcacagtagaactgg
gcctataactctataggagcacggtgctttcctaatatgctcgtgactat
aaggttttctcaaacccctttaaaaaactgaagtattttgatgtatttcc
ccttttatcaatttcaatttgcttctttctcctagcgcacattttcataa
taagtacgaattataacagctttgagtagttcatttatgatattaaatta
gtaacccatgaaaatgtccttgattattaatatttccttggtattcagct
aatcctggttagagatataataaaaatgattaagaatggcacctagtttc
aaaaattgagaaaaagattttgttgagggatgaatatgaatgaataagtg
gatgaatgaatatatagagtgtacagttcagatttccttccaggaagggc
atcagaaccatagaaattctttgccaagaatttgcttatcatcctttttc
ttaaaatatgtccaaaatcttcagttatttcttaaaaagattatattttc
ctaactatagattacatttcataattattatatataatatattatattat
aatatatagtaattatgtataatatacagattatagttcttaactcttaa
aataatgaaacctcttaggtttcattaactcattgtcatttagttcctag
aattaggggtatttgttcaaatatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_105378774_105379855
seq2: B6Ng01-147K15.b_42_1114 (reverse)

seq1  TCGGCCCCTTAAGCCACATCCAAGGATGATGAGGACTTTCCTTGCCACTT  50
      |||| || ||||||||||| |||||||||||||||||| |||||| || |
seq2  TCGG-CCTTTAAGCCACAT-CAAGGATGATGAGGACTTCCCTTGCAAC-T  47

seq1  CTTCATCTGGAGTGCCCACATGGGATAGAATGGTAGCAAGGCTCATCCAG  100
      ||| |||| ||||||||||||||||||| |||||||| ||||||||||||
seq2  CTTAATCT-GAGTGCCCACATGGGATAG-ATGGTAGC-AGGCTCATCCAG  94

seq1  AGCCAGGCAAGATTTCTGCTGACTCCATACTCCTGCAAACTTACATTTTT  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCCAGGCAAGATTTCTGCTGACTCCATACT-CTGCAAACTTACATTTTT  143

seq1  GTGGATAAGACCAAGAATGAAAAGAACTCTGTCTGGAGGCCTCTGTGGCT  200
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGGAT-AGACCAAGAATGAAAAGAACTCTGTCTGGAGG-CTCTGTGGCT  191

seq1  GAGGCAGCAGTAGGGTTCAAGGTCATAAATATCTATTGCCCTCTGGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCAGTAGGGTTCAAGGTCATAAATATCTATTGCCCTCTGGTGTA  241

seq1  ACTTCTGTCCCTTATAATACAGTGGTCCTAGGAAGGCAGGCTAAATTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTCCCTTATAATACAGTGGTCCTAGGAAGGCAGGCTAAATTGGT  291

seq1  CTTACCAGACAGCTACTGTCCTTATCAGTAGAGTGGGTTTCTGGGCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAGACAGCTACTGTCCTTATCAGTAGAGTGGGTTTCTGGGCTTTG  341

seq1  CTCTCAGTCAAACTCATTTAGTATTTTATTTCTCAAGGTGGGTCCTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTCAAACTCATTTAGTATTTTATTTCTCAAGGTGGGTCCTGGGT  391

seq1  GCTCATTGTGGGTGCTTGCTGAGGTTGATGCAAAATCTTTCTGAAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGTGGGTGCTTGCTGAGGTTGATGCAAAATCTTTCTGAAAGCAA  441

seq1  AGCTACTGCATGTATATTGAGTTATCTATCCTCTGTAGGCTGGAAGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTGCATGTATATTGAGTTATCTATCCTCTGTAGGCTGGAAGATAT  491

seq1  GAGGTGTGTTAAACTTTTTCACTCATTAGTATTACCACTGACTCACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGTTAAACTTTTTCACTCATTAGTATTACCACTGACTCACCAAG  541

seq1  AAAAGTTTCTAGGACTCTTTCTCTCAATTTCATTCCTAAATAAGGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCTAGGACTCTTTCTCTCAATTTCATTCCTAAATAAGGAGACA  591

seq1  CCATGTGCCCCAGCTGTGAAGTAGTGATTGCAGGTCCTGGGATATTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCCCCAGCTGTGAAGTAGTGATTGCAGGTCCTGGGATATTTATT  641

seq1  TCTTTCGATCTTTATGTCCTGCTGCTCTTGTCTCTGAAGCTTAAGGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCGATCTTTATGTCCTGCTGCTCTTGTCTCTGAAGCTTAAGGAAAT  691

seq1  CCATTTCCATTTCTCTGTCTATGCCTCCTTCTGTGTTTCTGCCTTTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCATTTCTCTGTCTATGCCTCCTTCTGTGTTTCTGCCTTTGTCT  741

seq1  CAGTCTCTCTGTTTCTGTCTTTTTCTGTGTGCTTTAATGACATATGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTCTGTTTCTGTCTTTTTCTGTGTGCTTTAATGACATATGTAAA  791

seq1  AGTATCTGATAAATGATAGATAGTTTTCACATATCAGAGAAAATATGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGATAAATGATAGATAGTTTTCACATATCAGAGAAAATATGCAA  841

seq1  TATTCAATATTCTCTAAAGCCCACACTTTATATTTAATATATATACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATATTCTCTAAAGCCCACACTTTATATTTAATATATATACATGT  891

seq1  AAATCAATTTAATAGATAAAAACCAATTTACCGTTGATTCTTTGATCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATTTAATAGATAAAAACCAATTTACCGTTGATTCTTTGATCAGC  941

seq1  AAGTTTACACTCATTCCCTTGTGCTGTATTCTACTACTGTTCTAGTATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTACACTCATTCCCTTGTGCTGTATTCTACTACTGTTCTAGTATTC  991

seq1  TAGAAAGTTTATTTTACTATACGTCCACGAGCGGCCATCGAGAGATCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTTTATTTTACTATACGTCCACGAGCGGCCATCGAGAGATCAAA  1041

seq1  ATATGGTTATTGGAACTGTGTAGGCTGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  ATATGGTTATTGGAACTGTGTAGGCTGAATTC  1073

seq1: chr6_105232493_105233269
seq2: B6Ng01-147K15.g_71_847

seq1  GAATTCTTTAGTTTCCGGTAGGTCTCTGTGGTCTCTGTGTAGGGCTTAGA  50
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATTCCGGTAGGTCTCTGTGGTCTCTGTGTAGGGCTTAGA  50

seq1  CCTCCTGGGATTTCTCCCCTCCATGTTAGAATTCCGCACAGTAGAACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGGATTTCTCCCCTCCATGTTAGAATTCCGCACAGTAGAACTGG  100

seq1  GCCTATAACTCTATAGGAGCACGGTGCTTTCCTAATATGCTCGTGACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAACTCTATAGGAGCACGGTGCTTTCCTAATATGCTCGTGACTAT  150

seq1  AAGGTTTTCTCAAACCCCTTTAAAAAACTGAAGTATTTTGATGTATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTCTCAAACCCCTTTAAAAAACTGAAGTATTTTGATGTATTTCC  200

seq1  CCTTTTATCAATTTCAATTTGCTTCTTTCTCCTAGCGCACATTTTCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATCAATTTCAATTTGCTTCTTTCTCCTAGCGCACATTTTCATAA  250

seq1  TAAGTACGAATTATAACAGCTTTGAGTAGTTCATTTATGATATTAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACGAATTATAACAGCTTTGAGTAGTTCATTTATGATATTAAATTA  300

seq1  GTAACCCATGAAAATGTCCTTGATTATTAATATTTCCTTGGTATTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCATGAAAATGTCCTTGATTATTAATATTTCCTTGGTATTCAGCT  350

seq1  AATCCTGGTTAGAGATATAATAAAAATGATTAAGAATGGCACCTAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGTTAGAGATATAATAAAAATGATTAAGAATGGCACCTAGTTTC  400

seq1  AAAAATTGAGAAAAAGATTTTGTTGAGGGATGAATATGAATGAATAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGAGAAAAAGATTTTGTTGAGGGATGAATATGAATGAATAAGTG  450

seq1  GATGAATGAATATATAGAGTGTACAGTTCAGATTTCCTTCCAGGAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGAATATATAGAGTGTACAGTTCAGATTTCCTTCCAGGAAGGGC  500

seq1  ATCAGAACCATAGAAATTCTTTGCCAAGAATTTGCTTATCATCCTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACCATAGAAATTCTTTGCCAAGAATTTGCTTATCATCCTTTTTC  550

seq1  TTAAAATATGTCCAAAATCTTCAGTTATTTCATAAAAAGATTATATTTTC  600
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAAAATATGTCCAAAATCTTCAGTTATTTCTTAAAAAGATTATATTTTC  600

seq1  CTAACTATAGATTACATTTCATAATTATTATATATAATATATTATATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATAGATTACATTTCATAATTATTATATATAATATATTATATTAT  650

seq1  AATATATAGTAATTATGTATAATATACAGATTATATTTCTTAACTCTTAA  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATATATAGTAATTATGTATAATATACAGATTATAGTTCTTAACTCTTAA  700

seq1  AATAATGAAACCTCTTAGGTTTCATTAACTCATTGTCATTTAGTTCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAAACCTCTTAGGTTTCATTAACTCATTGTCATTTAGTTCCTAG  750

seq1  AATTAGGGGTATTTGTTCAAATATGGC  777
      |||||||||||||||||||||||||||
seq2  AATTAGGGGTATTTGTTCAAATATGGC  777