BAC Information

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BAC

Clone NameB6Ng01-150I11
Chromosome6 (Build37)
Map Location 28,863,071 - 28,996,710
singlet/doubletdoublet
Overlap geneLOC100041367
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
Downstream geneLep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150I11.bB6Ng01-150I11.g
ACCDH946585DH946586
length1,0471,124
definitionDH946585|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I11, 5' end.DH946586|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,995,662 - 28,996,710)(28,863,071 - 28,864,201)
sequence
gaattcactctgtccagcagagccccgggttgagtctctgacagtctccc
gtcttaccctggttatgttgtagaagttcctgggaccctagtcttagccc
tacacaataagatcagaataccttggcttggtaccaggtatcacaggttt
cagaatcaggcagtccagcagtggtggcacatgactttaatcccagcact
tgggaggcagaggcaagcagatttctgagttcgaggccatcctgatctac
agagtgagttccaggacagccagggttacacagagaaaccctgtctcaga
aaaccaaaataaataaataaataaataaataaataaataaataaataaat
aaataaatcctccaggcattacagtgaccaggtcttgacttcacagccat
cattgcaaggcctctgaactcacaggcagccgctgactgagtgacccatt
gagaagtcccttaaaatccctgggatctttaaggaaagacgctgcctcgt
gtttggggcaccgtttaaggcagacaccttaggatggggtttcctcatta
gcctgtatccctttcaagcaccctaaggggtccaaatacaggctgtgttg
agaatcgaagtctagaagctcaaaccaaatagccaatgcaccccaactga
tcgggacagagttagggtggcgtggctcatcctctgtggggtcccattga
gctgcagggagcaaggatgaaggagctagccatcaacacttcctatccca
gtttgcccagatgccaaatgttcaaaagaactcctgttcttaagccaatc
cagcgtttccagcaaattcacagaaatatttacctgacatcttatttctt
tgtaggaaaaactaaaaactaaactaaaataaaataaaataaaaattaca
ctttagtttttgcccataaaacaattctttaaaaactgtcacaaatggct
ccacatgaatgcgcttcatcatggggaccctctgcagaggactgatggca
ctcggctctgtatgagagagataagaattacttgatgagatttaaca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaacaaccctgagattccacc
tcacaccagtcagaatggctaagatgaaaaattcaggtgacagcagatgc
tggcaaggatgtggagaaagaggaacactcctccattgttggtgggattg
caagcttgtacaaccactctggaaatcagtctggcggttcctcagaaaat
tggacatagtactactggaggatcccgcaatacctctcctgggcatatat
ccagaagatgtcccaaccggtaagaaggacacatgctccactatgttcat
agcagcctatttataatagccagaagctggaaagaacccagatgcccctc
aacagaggaatagatacagaaaatgtggtacattgtctgatcaactcttt
accatacactcttaataactggcgggccagagatggtctcaggccttagg
ggtcaccacggaatcatttttgctgtgcactgctcagtagatccacagag
aagggcttgagggtgagtggagaggcaacactaagaggctggcaaatgaa
agagagaggaagaggcatttggaggcagactaaatggtctgaaaccaaca
gatgcatgtggagctcagagcaatgagaagccagggacggtggggctggg
agctggagcgagagaaaatgttcctttcaaaacgattttgaagggaaagg
gacaagaaggaccctagagaggcagatggatgggaagcaacaaatggact
gcatgcaggactgcctgccccatgaggcctcagctctgcttagcctgtgc
agcctggctgcccccagaggccccagaggctctgattagctcactgagcc
ggacctcagctcccacccaggtaccaccagaaagatgcttcaatgtgaga
tgctgtctcagtgagaaagttgggtagagcaggcttgctgtcagagccta
agtacagggtctggggctcagtcatcgacttataggtcccaaagacacca
aaggccctgttgtcagcctcatgggctggctcaaggggattcagggggga
gggaggagtgttttcttttgctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28995662_28996710
seq2: B6Ng01-150I11.b_46_1092 (reverse)

seq1  TGTTAAATCTCATCAAGTAATTCTTATCTCTCTTCATACAGAGCCGAGTG  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTAAATCTCATCAAGTAATTCTTATCTCTC-TCATACAGAGCCGAGTG  49

seq1  CCATCAGTCCTCTGCAGAGGGTCCCCATGATGAAGCGCATTCATGTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTCCTCTGCAGAGGGTCCCCATGATGAAGCGCATTCATGTGGAG  99

seq1  CCATTTGTGACAGTTTTTAAAGAATTGTTTTTATGGGCAAAAACTAAAGT  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATTTGTGACAGTTTTTAAAGAATTG-TTTTATGGGCAAAAACTAAAGT  148

seq1  GTAATTTTTATTTTATTTTATTTTAGTTTAGTTTTTAGTTTTTCCTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTATTTTATTTTATTTTAGTTTAGTTTTTAGTTTTTCCTACAA  198

seq1  AGAAATAAGATGTCAGGTAAATATTTCTGTGAATTTGCTGGAAACGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGATGTCAGGTAAATATTTCTGTGAATTTGCTGGAAACGCTGG  248

seq1  ATTGGCTTAAGAACAGGAGTTCTTTTGAACATTTGGCATCTGGGCAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTAAGAACAGGAGTTCTTTTGAACATTTGGCATCTGGGCAAACT  298

seq1  GGGATAGGAAGTGTTGATGGCTAGCTCCTTCATCCTTGCTCCCTGCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGAAGTGTTGATGGCTAGCTCCTTCATCCTTGCTCCCTGCAGCT  348

seq1  CAATGGGACCCCACAGAGGATGAGCCACGCCACCCTAACTCTGTCCCGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGACCCCACAGAGGATGAGCCACGCCACCCTAACTCTGTCCCGAT  398

seq1  CAGTTGGGGTGCATTGGCTATTTGGTTTGAGCTTCTAGACTTCGATTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGGGTGCATTGGCTATTTGGTTTGAGCTTCTAGACTTCGATTCTC  448

seq1  AACACAGCCTGTATTTGGACCCCTTAGGGTGCTTGAAAGGGATACAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCCTGTATTTGGACCCCTTAGGGTGCTTGAAAGGGATACAGGCT  498

seq1  AATGAGGAAACCCCATCCTAAGGTGTCTGCCTTAAACGGTGCCCCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAAACCCCATCCTAAGGTGTCTGCCTTAAACGGTGCCCCAAACA  548

seq1  CGAGGCAGCGTCTTTCCTTAAAGATCCCAGGGATTTTAAGGGACTTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCAGCGTCTTTCCTTAAAGATCCCAGGGATTTTAAGGGACTTCTCA  598

seq1  ATGGGTCACTCAGTCAGCGGCTGCCTGTGAGTTCAGAGGCCTTGCAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCACTCAGTCAGCGGCTGCCTGTGAGTTCAGAGGCCTTGCAATGA  648

seq1  TGGCTGTGAAGTCAAGACCTGGTCACTGTAATGCCTGGAGGATTTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGAAGTCAAGACCTGGTCACTGTAATGCCTGGAGGATTTATTTA  698

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGGTTTT  748

seq1  CTGAGACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTCTG  798

seq1  TAGATCAGGATGGCCTCGAACTCAGAAATCTGCTTGCCTCTGCCTCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGGATGGCCTCGAACTCAGAAATCTGCTTGCCTCTGCCTCCCAA  848

seq1  GTGCTGGGATTAAAGTCATGTGCCACCACTGCTGGACTGCCTGATTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGTCATGTGCCACCACTGCTGGACTGCCTGATTCTGA  898

seq1  AACCTGTGATACCTGGTACCAAGCCAAGGTATTCTGATCTTATTGTGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGATACCTGGTACCAAGCCAAGGTATTCTGATCTTATTGTGTAG  948

seq1  GGCTAAGACTAGGGTCCCAGGAACTTCTACAACATAACCAGGGTAAGACG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGACTAGGGTCCCAGGAACTTCTACAACATAACCAGGGTAAGACG  998

seq1  GGAGACTGTCAGAGACTCAACCCGGGGCTCTGCTGGACAGAGTGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGTCAGAGACTCAACCCGGGGCTCTGCTGGACAGAGTGAATTC  1047

seq1: chr6_28863071_28864201
seq2: B6Ng01-150I11.g_67_1190

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAACAACCCTGAGATTCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAACAACCCTGAGATTCCACC  100

seq1  TCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGACAGCAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGACAGCAGATGC  150

seq1  TGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG  200

seq1  CAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT  250

seq1  TGGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCATATAT  300

seq1  CCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCAT  350

seq1  AGCAGCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC  400

seq1  AACAGAGGAATAGATACAGAAAATGTGGTACATTGTCTGATCAACTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAATAGATACAGAAAATGTGGTACATTGTCTGATCAACTCTTT  450

seq1  ACCATACACTCTTAATAACTGGCGGGCCAGAGATGGTCTCAGGCCTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACACTCTTAATAACTGGCGGGCCAGAGATGGTCTCAGGCCTTAGG  500

seq1  GGTCACCACGGAATCATTTTTGCTGTGCACTGCTCAGTAGATCCACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCACGGAATCATTTTTGCTGTGCACTGCTCAGTAGATCCACAGAG  550

seq1  AAGGGCTTGAGGGTGAGTGGAGAGGCAACACTAAGAGGCTGGCAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTGAGGGTGAGTGGAGAGGCAACACTAAGAGGCTGGCAAATGAA  600

seq1  AGAGAGAGGAAGAGGCATTTGGAGGCAGACTAAATGGTCTGAAACCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGAAGAGGCATTTGGAGGCAGACTAAATGGTCTGAAACCAACA  650

seq1  GATGCATGTGGAGCTCAGAGCAATGAGAAGCCAGGGACGGTGGGGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGTGGAGCTCAGAGCAATGAGAAGCCAGGGACGGTGGGGCTGGG  700

seq1  AGCTGGAGCGAGAGAAAATGTTCCTTTCAAAACGATTTTGAAGGG-AAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCTGGAGCGAGAGAAAATGTTCCTTTCAAAACGATTTTGAAGGGAAAGG  750

seq1  GACAAGAAGGACCCTAGAGAGGCAGATGGATGGGAAGCAACAAATGGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAGGACCCTAGAGAGGCAGATGGATGGGAAGCAACAAATGGACT  800

seq1  GCATGCA-GACTGCCTGCCCCATGAGGCCTCAGCTCTGCTTAGCCTGTGC  848
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAGGACTGCCTGCCCCATGAGGCCTCAGCTCTGCTTAGCCTGTGC  850

seq1  AGCCTGGCTGCCCCCAGAGGCCCCAGAGGCTCTGATTAGCTCACTGAGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCTGCCCCCAGAGGCCCCAGAGGCTCTGATTAGCTCACTGAGCC  900

seq1  GGACCTCAGCTCCCACCCAGGTACCACCAGAAAAGATGCTTCAATGTGAG  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGACCTCAGCTCCCACCCAGGTACCACCAG-AAAGATGCTTCAATGTGAG  949

seq1  ATGCTGTCTCAGGTGAGAAAGGTTGGGTAGAGCAGGCTTGCTGGTCAGAG  998
      ||||||||||| |||||||| ||||||||||||||||||||| |||||||
seq2  ATGCTGTCTCA-GTGAGAAA-GTTGGGTAGAGCAGGCTTGCT-GTCAGAG  996

seq1  CCTAAGTACAGGGTCTGGGGCTCCAGTCATCGAC-TATAGGGTTCCCATA  1047
      |||||||||||||||||||||| ||||||||||| ||||||  ||||| |
seq2  CCTAAGTACAGGGTCTGGGGCT-CAGTCATCGACTTATAGG--TCCCAAA  1043

seq1  GACACCAAAGGCCCTGTTGTCAGCCCTCATGGGCTGGCTCAGGGGGATTC  1097
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GACACCAAAGGCCCTGTTGTCAG-CCTCATGGGCTGGCTCAAGGGGATTC  1092

seq1  AAGTGGGAGGGAGGAAGTGTTTCTTTTTGGCTAG  1131
      | | |||||||||| ||||||| | ||| |||||
seq2  AGGGGGGAGGGAGG-AGTGTTT-TCTTTTGCTAG  1124