BAC Information

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BAC

Clone NameB6Ng01-150L13
Chromosome6 (Build37)
Map Location 112,772,837 - 112,773,814
singlet/doubletsinglet
Overlap geneSrgap3
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18
Downstream geneEG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150L13.bB6Ng01-150L13.g
ACCDH946729DH946730
length1,248982
definitionDH946729|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L13, 5' end.DH946730|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aatgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgccggacctaaagctttactacagagcaattgtggtaaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaagacagcattttcaacaaatggtgctggc
acaactggttgtatcatgtagaagaatgcgaatcgatccatacttatctc
cttgtactaaggtcaatctaaatggatcaaagaacttcacataaaaccag
agacactgaaactatagaggagaaagtggggaaaagcctgagaatatggc
acagggaaaattcctgaacagaacagcaatggcttgttgctgttagatcg
aggaattgaacatggacctaattgactcaaggttctgcaagcaaagaacc
ccgtccatagaaaccagagagacccccacacacgaatgtgtgggtaag
gaattctggtgggacatggaaagtcagggcatgtgtcatagtctccaaag
gacagaaaaggggcttgaagggcagacacagtggggttctcaggacccac
aattgaagggtgaaatagctggccagagagccttcggttggcccttcttt
tgcttggttctgtatataccacatgtcatgtccattttcttgctagttaa
accaaggcacagaggtccgtatgggaggagagtgaggctgcccaggtgtt
tcctagtgggataggggttttcatttcaggactcgactgaagatggggat
caggtgcctgaagagggtgtcaggtgtgggggtttatgctctccagatcc
caagatcccaggacactgggtttagatccacatgcctcctgggttctgca
ggcttggatctgggttttgtttgctaagcggaattttccagcccccagcc
gggaagctggcagagctagcttgctgctaatttcattttcctaactcacc
agcttggcaaggcttggcctctccagcttcagtctcttggaacctcattc
ccacctttcttagccaaagaaagcgagcaagctgtgactcaccagaaatg
ctcactgctagtttctagccataaagaagaaaatatatacatctgcggta
gttctgcccttatgtcctagctcagcagcttctgcctgccggggagaggc
ttcgaggcaagatgagaaaagcaagagagttagtgtgcctgagatgaggg
gaggctggctcgcttcgttttaatgtcttctaaaattggagactgcagca
aggaacagtagcagagtgagctagagatcagccctgggtgccattttgaa
gaaagaccgtgttggtcccaggaaaggagagcggacgcacaggtttcctg
gtactccacccctcatcttgcacctgcactcttcatattgatttctgcag
tccccataatgcggatggtgcattgggatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_112772837_112773814
seq2: B6Ng01-150L13.g_68_1049 (reverse)

seq1  CTCATCCC-ATGCACCATCCGCATTATGGGGACTGCAGAAATCAATATGA  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCAATGCACCATCCGCATTATGGGGACTGCAGAAATCAATATGA  50

seq1  AGAGTGCAGGTGACAGATGA-GGGTGGAGTACCAGG-AACCTGTGCGTCC  97
      ||||||||||||  |||||| ||||||||||||||| |||||||||||||
seq2  AGAGTGCAGGTGCAAGATGAGGGGTGGAGTACCAGGAAACCTGTGCGTCC  100

seq1  GCTCTCCTTTTCCTGGGACC-ACACGTTCTTTCTTCAAAATGGCACCCAG  146
      ||||||| |||||||||||| ||||| |||||||||||||||||||||||
seq2  GCTCTCC-TTTCCTGGGACCAACACGGTCTTTCTTCAAAATGGCACCCAG  149

seq1  GGCTGATCTCTAGCTCACTCTGCTACTGTTCCTTGCTGCAGTCTCC-ATT  195
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCTGATCTCTAGCTCACTCTGCTACTGTTCCTTGCTGCAGTCTCCAATT  199

seq1  TTAGAAGACATTAAAACGAAGCGAGCCAGCCTCCCCTCATCTCAGGCACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGACATTAAAACGAAGCGAGCCAGCCTCCCCTCATCTCAGGCACA  249

seq1  CTAACTCTCTTGCTTTTCTCATCTTGCCTCGAAGCCTCTCCCCGGCAGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTCTTGCTTTTCTCATCTTGCCTCGAAGCCTCTCCCCGGCAGGC  299

seq1  AGAAGCTGCTGAGCTAGGACATAAGGGCAGAACTACCGCAGATGTATATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGCTGAGCTAGGACATAAGGGCAGAACTACCGCAGATGTATATA  349

seq1  TTTTCTTCTTTATGGCTAGAAACTAGCAGTGAGCATTTCTGGTGAGTCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTTTATGGCTAGAAACTAGCAGTGAGCATTTCTGGTGAGTCAC  399

seq1  AGCTTGCTCGCTTTCTTTGGCTAAGAAAGGTGGGAATGAGGTTCCAAGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTCGCTTTCTTTGGCTAAGAAAGGTGGGAATGAGGTTCCAAGAG  449

seq1  ACTGAAGCTGGAGAGGCCAAGCCTTGCCAAGCTGGTGAGTTAGGAAAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCTGGAGAGGCCAAGCCTTGCCAAGCTGGTGAGTTAGGAAAATG  499

seq1  AAATTAGCAGCAAGCTAGCTCTGCCAGCTTCCCGGCTGGGGGCTGGAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCAGCAAGCTAGCTCTGCCAGCTTCCCGGCTGGGGGCTGGAAAA  549

seq1  TTCCGCTTAGCAAACAAAACCCAGATCCAAGCCTGCAGAACCCAGGAGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCTTAGCAAACAAAACCCAGATCCAAGCCTGCAGAACCCAGGAGGC  599

seq1  ATGTGGATCTAAACCCAGTGTCCTGGGATCTTGGGATCTGGAGAGCATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATCTAAACCCAGTGTCCTGGGATCTTGGGATCTGGAGAGCATAA  649

seq1  ACCCCCACACCTGACACCCTCTTCAGGCACCTGATCCCCATCTTCAGTCG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACACCTGACACCCTCTTCAGGCACCTGATCCCCATCTTCAGTCG  699

seq1  AGTCCTGAAATGAAAACCCCTATCCCACTAGGAAACACCTGGGCAGCCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGAAATGAAAACCCCTATCCCACTAGGAAACACCTGGGCAGCCTC  749

seq1  ACTCTCCTCCCATACGGACCTCTGTGCCTTGGTTTAACTAGCAAGAAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTCCCATACGGACCTCTGTGCCTTGGTTTAACTAGCAAGAAAAT  799

seq1  GGACATGACATGTGGTATATACAGAACCAAGCAAAAGAAGGGCCAACCGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGACATGTGGTATATACAGAACCAAGCAAAAGAAGGGCCAACCGA  849

seq1  AGGCTCTCTGGCCAGCTATTTCACCCTTCAATTGTGGGTCCTGAGAACCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCTGGCCAGCTATTTCACCCTTCAATTGTGGGTCCTGAGAACCC  899

seq1  CACTGTGTCTGCCCTTCAAGCCCCTTTTCTGTCCTTTGGAGACTATGACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTCTGCCCTTCAAGCCCCTTTTCTGTCCTTTGGAGACTATGACA  949

seq1  CATGCCCTGACTTTCCATGTCCCACCAGAATTC  978
      |||||||||||||||||||||||||||||||||
seq2  CATGCCCTGACTTTCCATGTCCCACCAGAATTC  982