BAC Information

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BAC

Clone NameB6Ng01-150M05
Chromosome6 (Build37)
Map Location 66,293,141 - 66,447,534
singlet/doubletdoublet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150M05.bB6Ng01-150M05.g
ACCDH946758DH946759
length4681,106
definitionDH946758|Mus musculus domesticus DNA, BAC clone: B6Ng01-150M05, 5' end.DH946759|Mus musculus domesticus DNA, BAC clone: B6Ng01-150M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,293,141 - 66,293,614)(66,446,411 - 66,447,534)
sequence
agagataaaaccatattttcaatattgcaaaagttcagttctgatcagaa
ataattatttataaaacatttcacagtgaggatggaggatggatgctgct
ctgtggttaagagcatgtactgctcttgtagggggcccagattcattccc
agcataacatggtggctcataaccatatgtctagttgcaggggatcctgt
gcctgcttctggcctccagacaccataaatgtggtccacagacactcatg
tgtgcccgcataccattcatcaccatttctatcctttttccattttttca
cttgcttctcttacattttcttcattccttgtctccttcatctcatccat
ccattagtcatctccacactgaccccaaataatacttaaccgcatagctc
tcttcattaactttgcaagtttctattttatagaagtagtaaatttgtgt
gtgtgtgtggggggggtg
gaattcaatttgccaggagaatttctatatctgaattgaagctgctgtta
agggtacacttttggggtaacatgtatgccattccagtattatatagtta
tcacactgccctaaacaaagattcataggcagggcatgattacatattac
atactagaaatagaatgggagtcagagtggatgtgttacattgaaatatg
aatgtttttctccatcgttgagggtttttcctaagctagataaactagat
attggaaaatgctataaactttaaccacataaacacacttggctcaactt
tccaggctagttagtttcatatcaacttgacacaagctactcatttgaga
ggtaaaaaacctccattgagaaaatgcctccatgagattgagctgtaggc
aagtttgtagggcattttcttaattagtcatttaggtaggagggacccat
tgtgggtggtgccattcccgggctggtggtccaggattctataagaaatc
agactgagaaaacaaggctgggagcaagccaggaagcagcacccctccat
gacatcagcatcagttcctgctttctgattcctgccctgtttgagttctt
gctccaacatctctctatggtgagctgtcaaatggaagctaaataagtga
aataaaccctttcctccctgagttgcttttggtctttgtgctttatcaca
gcaatcaaaatcctaacttggacagcaaccattccagcacagaaggaggt
gagaagtaggatgttttcagtttctgcgagcactaaccgcttaacaagaa
tgcagactttggtctaaaggagtgccaaggcagcctctgtgtcagagcag
tgtgctgacttatggcagcaggctcagctcagcatggattctgtaagtag
ggaagctgctgggagtgaccccagaggcatgtctgcagcaagtcatgagc
actgcagctaacatgattgtggacgtgagtacttcccaaagatatcaaat
gtacaaaggtcggaaatcctcttaacatgtctcttacagtatgcagaata
ggatcttccatgagaactgatttaaaaacaattcatccaagttgttaaaa
gaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66293141_66293614
seq2: B6Ng01-150M05.b_47_520

seq1  GAATTCAGAGATAAAACCATATTTTCAATATTGCAAAAGTTCAGTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATAAAACCATATTTTCAATATTGCAAAAGTTCAGTTCTGA  50

seq1  TCAGAAATAATTATTTATAAAACATTTCACAGTGAGGATGGAGGATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATAATTATTTATAAAACATTTCACAGTGAGGATGGAGGATGGAT  100

seq1  GCTGCTCTGTGGTTAAGAGCATGTACTGCTCTTGTAGGGGGCCCAGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTGTGGTTAAGAGCATGTACTGCTCTTGTAGGGGGCCCAGATTC  150

seq1  ATTCCCAGCATAACATGGTGGCTCATAACCATATGTCTAGTTGCAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCATAACATGGTGGCTCATAACCATATGTCTAGTTGCAGGGGA  200

seq1  TCCTGTGCCTGCTTCTGGCCTCCAGACACCATAAATGTGGTCCACAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCCTGCTTCTGGCCTCCAGACACCATAAATGTGGTCCACAGACA  250

seq1  CTCATGTGTGCCCGCATACCATTCATCACCATTTCTATCCTTTTTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGTGCCCGCATACCATTCATCACCATTTCTATCCTTTTTCCATT  300

seq1  TTTTCACTTGCTTCTCTTACATTTTCTTCATTCCTTGTCTCCTTCATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTGCTTCTCTTACATTTTCTTCATTCCTTGTCTCCTTCATCTC  350

seq1  ATCCATCCATTAGTCATCTCCACACTGACCCCAAATAATACTTAACCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATTAGTCATCTCCACACTGACCCCAAATAATACTTAACCGCA  400

seq1  TAGCTCTCTTCATTAACTTTGCAAGTTTCTATTTTATAGAAGTAGTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCTTCATTAACTTTGCAAGTTTCTATTTTATAGAAGTAGTAAAT  450

seq1  TTGTGTGTGTGTGTGGGGGGGGTG  474
      ||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGGGGGGGGTG  474

seq1: chr6_66446411_66447534
seq2: B6Ng01-150M05.g_68_1173 (reverse)

seq1  CATTTCTTTTAACCACTTGTGATGAATTTGTTTTTTAAAAATCCAGTTCT  50
      ||||||||||||| ||||| |||||| ||||||||   |||| |||||||
seq2  CATTTCTTTTAACAACTTG-GATGAA-TTGTTTTT---AAAT-CAGTTCT  44

seq1  CATGTGAGATCCTATTCTGCATACTGTAGGAGACCATGTTTAAGAAGGAT  100
      ||||  |||||||||||||||||||||| |||| |||| ||||| |||||
seq2  CATGGAAGATCCTATTCTGCATACTGTAAGAGA-CATG-TTAAG-AGGAT  91

seq1  TTTCCCGACCTTTGTACATTTGATATTCCTTTGGGAAGTACTTCACGGTC  150
      ||  ||||||||||||||||||||||  ||||||||||||| |||| |||
seq2  TT--CCGACCTTTGTACATTTGATAT--CTTTGGGAAGTAC-TCAC-GTC  135

seq1  CAACAATCATGTTTAGCTGCAGTTGCTCATGACTTGCTGCAGACATGCCT  200
      | ||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  C-ACAATCATG-TTAGCTGCAG-TGCTCATGACTTGCTGCAGACATGCCT  182

seq1  CTGGGGTCACTCCCAGCAGCTTCCCTACTTACAGAATCCATGCTGAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCACTCCCAGCAGCTTCCCTACTTACAGAATCCATGCTGAGCTG  232

seq1  AGCCTGCTGCCATAAGTCAGCACACTGCTCTGACACAGAGGCTGCCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGCCATAAGTCAGCACACTGCTCTGACACAGAGGCTGCCTTGG  282

seq1  CACTCCTTTAGACCAAAGTCTGCATTCTTGTTAAGCGGTTAGTGCTCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTTAGACCAAAGTCTGCATTCTTGTTAAGCGGTTAGTGCTCGCA  332

seq1  GAAACTGAAAACATCCTACTTCTCACCTCCTTCTGTGCTGGAATGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAAAACATCCTACTTCTCACCTCCTTCTGTGCTGGAATGGTTGC  382

seq1  TGTCCAAGTTAGGATTTTGATTGCTGTGATAAAGCACAAAGACCAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGTTAGGATTTTGATTGCTGTGATAAAGCACAAAGACCAAAAGC  432

seq1  AACTCAGGGAGGAAAGGGTTTATTTCACTTATTTAGCTTCCATTTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGGAGGAAAGGGTTTATTTCACTTATTTAGCTTCCATTTGACAG  482

seq1  CTCACCATAGAGAGATGTTGGAGCAAGAACTCAAACAGGGCAGGAATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATAGAGAGATGTTGGAGCAAGAACTCAAACAGGGCAGGAATCAG  532

seq1  AAAGCAGGAACTGATGCTGATGTCATGGAGGGGTGCTGCTTCCTGGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGAACTGATGCTGATGTCATGGAGGGGTGCTGCTTCCTGGCTTG  582

seq1  CTCCCAGCCTTGTTTTCTCAGTCTGATTTCTTATAGAATCCTGGACCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCCTTGTTTTCTCAGTCTGATTTCTTATAGAATCCTGGACCACC  632

seq1  AGCCCGGGAATGGCACCACCCACAATGGGTCCCTCCTACCTAAATGACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGGAATGGCACCACCCACAATGGGTCCCTCCTACCTAAATGACTA  682

seq1  ATTAAGAAAATGCCCTACAAACTTGCCTACAGCTCAATCTCATGGAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAAATGCCCTACAAACTTGCCTACAGCTCAATCTCATGGAGGCA  732

seq1  TTTTCTCAATGGAGGTTTTTTACCTCTCAAATGAGTAGCTTGTGTCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAATGGAGGTTTTTTACCTCTCAAATGAGTAGCTTGTGTCAAGT  782

seq1  TGATATGAAACTAACTAGCCTGGAAAGTTGAGCCAAGTGTGTTTATGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGAAACTAACTAGCCTGGAAAGTTGAGCCAAGTGTGTTTATGTGG  832

seq1  TTAAAGTTTATAGCATTTTCCAATATCTAGTTTATCTAGCTTAGGAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTATAGCATTTTCCAATATCTAGTTTATCTAGCTTAGGAAAAA  882

seq1  CCCTCAACGATGGAGAAAAACATTCATATTTCAATGTAACACATCCACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAACGATGGAGAAAAACATTCATATTTCAATGTAACACATCCACTC  932

seq1  TGACTCCCATTCTATTTCTAGTATGTAATATGTAATCATGCCCTGCCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCATTCTATTTCTAGTATGTAATATGTAATCATGCCCTGCCTAT  982

seq1  GAATCTTTGTTTAGGGCAGTGTGATAACTATATAATACTGGAATGGCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTGTTTAGGGCAGTGTGATAACTATATAATACTGGAATGGCATA  1032

seq1  CATGTTACCCCAAAAGTGTACCCTTAACAGCAGCTTCAATTCAGATATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACCCCAAAAGTGTACCCTTAACAGCAGCTTCAATTCAGATATAG  1082

seq1  AAATTCTCCTGGCAAATTGAATTC  1124
      ||||||||||||||||||||||||
seq2  AAATTCTCCTGGCAAATTGAATTC  1106