BAC Information

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BAC

Clone NameB6Ng01-152L16
Chromosome6 (Build37)
Map Location 107,111,625 - 107,112,680
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152L16.bB6Ng01-152L16.g
ACCDH948231DH948232
length1,1661,068
definitionDH948231|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L16, 5' end.DH948232|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggaatgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggataaccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaagaagttacagagacaaagtttggagctgagatga
aaggaaggaccatgtagagagtgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgaatacactagcaagattttattgaaa
ggacccagatgtagctgtctctttgtgagactatgccggggcctagcaaa
cacagtagtggatgctcacagtcagctaatggatggatcatagggctccc
aatggaaggagctagagaaagtagccaggagctaaagggatctgcaccct
ataggtggaacaacattatgactaaccagtacccggagctcttgactcta
gctgcatattatcaaagatggcctgtcggcatcctgggaagaagccattg
actgcaactttaattgcccagtacagcacccagtcaaaggggagtggagt
tggcaagtgagtgtgt
gaattcagaggactataaagctttaaaaaaaaaaagaggacatgaagttt
gaaggaagatggggtgataagctctatgggtagttggaggaaattagatc
agaatgatttatataaggggatgaaatttccaaggaataaataaaacact
gcggaaatagattggtatgctctttattaaaatctatttcaatagacacc
acaagaagcatagaggcaacaagcattcactaaataaaccactctatttc
ctaggagcatttgtggaaatgctacttataagcaagtacgtggccaagaa
tgctactcttaggagctggtttcatgggacgtattcatggttttccactg
taccagtcactatagagttaaatgtctaaaattagcatgtctcccaggct
taacctcgaaataaaaataacaagaaaatttcattataaacgcaaacaaa
tattataagcacctagaaaaaataaatgcctcctagtttcatggaaccaa
catgcctaaaggaaaggggtgttgtcactcaaaaaaaaaaggcttttaaa
acacatcacacacacacacacagagcaagagagagaaacagagagacaga
gagaacagaaagagacagagaggtttttgacggtacaaggcagaaaattg
gaaagatcagaaattgaaaattggtaagaacagacaaactgatcagtagc
acaaagttagagagacttagaagaattgcaaacataaatgggaaacatgg
tggtagagcagagaccagagacagagtgagttaattagaagggaaatccg
aaaacctaagaatgacacaaagaatgtttgcttctcagaaagggaacagt
gcagttagaaccccatgtcatttcatttcctggtaggttaaatggaaaat
acaaaagcattattttttctttaggccatggtattgatttttaaaattta
ttaacaataattataataccttaagtgagtttatgtgctgggatagcttt
atgttcaaccttatagaagtttaatattcatctgtggggagttaaacctc
agttaaaataaaaaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107111625_107112680
seq2: B6Ng01-152L16.g_69_1136

seq1  GAATTCAGAGGACTATAAAGCTTTAAAAAAAAAAAGAGGACATGAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGACTATAAAGCTTTAAAAAAAAAAAGAGGACATGAAGTTT  50

seq1  GAAGGAAGATGGGGTGATAAGCTCTATGGGTAGTTGGAGGAAATTAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGATGGGGTGATAAGCTCTATGGGTAGTTGGAGGAAATTAGATC  100

seq1  AGAATGATTTATATAAGGGGATGAAATTTCCAAGGAATAAATAAAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATTTATATAAGGGGATGAAATTTCCAAGGAATAAATAAAACACT  150

seq1  GCGGAAATAGATTGGTATGCTCTTTATTAAAATCTATTTCAATAGACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAATAGATTGGTATGCTCTTTATTAAAATCTATTTCAATAGACACC  200

seq1  ACAAGAAGCATAGAGGCAACAAGCATTCACTAAATAAACCACTCTATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGCATAGAGGCAACAAGCATTCACTAAATAAACCACTCTATTTC  250

seq1  CTAGGAGCATTTGTGGAAATGCTACTTATAAGCAAGTACGTGGCCAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCATTTGTGGAAATGCTACTTATAAGCAAGTACGTGGCCAAGAA  300

seq1  TGCTACTCTTAGGAGCTGGTTTCATGGGACGTATTCATGGTTTTCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTCTTAGGAGCTGGTTTCATGGGACGTATTCATGGTTTTCCACTG  350

seq1  TACCAGTCACTATAGAGTTAAATGTCTAAAATTAGCATGTCTCCCAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCACTATAGAGTTAAATGTCTAAAATTAGCATGTCTCCCAGGCT  400

seq1  TAACCTCGAAATAAAAATAACAAGAAAATTTCATTATAAACGCAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCGAAATAAAAATAACAAGAAAATTTCATTATAAACGCAAACAAA  450

seq1  TATTATAAGCACCTAGAAAAAATAAATGCCTCCTAGTTTCATGGAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAGCACCTAGAAAAAATAAATGCCTCCTAGTTTCATGGAACCAA  500

seq1  CATGCCTAAAGGAAAGGGGTGTTGTCACTCAAAAAAAAAAGGCTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTAAAGGAAAGGGGTGTTGTCACTCAAAAAAAAAAGGCTTTTAAA  550

seq1  ACACATCACACACACACACACAGAGCAAGAGAGAGAAACAGAGAGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCACACACACACACACAGAGCAAGAGAGAGAAACAGAGAGACAGA  600

seq1  GAGAACAGAAAGAGACAGAGAGGTTTTTGACGGTACAAGGCAGAAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGAAAGAGACAGAGAGGTTTTTGACGGTACAAGGCAGAAAATTG  650

seq1  GAAAGATCAGAAATTGAAAATTGGTAAGAACAGACAAACTGATCAGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCAGAAATTGAAAATTGGTAAGAACAGACAAACTGATCAGTAGC  700

seq1  ACAAAG-TAGAGAGACTTAGAAGAATTGCAAACATAAAT-GGAAACATGG  748
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAAAGTTAGAGAGACTTAGAAGAATTGCAAACATAAATGGGAAACATGG  750

seq1  -GGTAGAGCAGAGACCAGAGACAGAGTGAGTTAATTAGAA-GGAAACCCG  796
       ||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  TGGTAGAGCAGAGACCAGAGACAGAGTGAGTTAATTAGAAGGGAAATCCG  800

seq1  AAAACCTAAGAATGACACAAAGAATGTTTGCTTCTCAGAAAGGAAACAGT  846
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAACCTAAGAATGACACAAAGAATGTTTGCTTCTCAGAAAGGGAACAGT  850

seq1  GCAGTTAGAACCCCATGTCATTTCATTTCCTGGTAGGTTATAATGGAAAA  896
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCAGTTAGAACCCCATGTCATTTCATTTCCTGGTAGGTTA-AATGGAAAA  899

seq1  TACAAAAGCA-TATTTTTCTATTAGGCCATGG-AATGATTTTTAAAAATT  944
      |||||||||| |||||||   ||||||||||| | |||||||| ||||||
seq2  TACAAAAGCATTATTTTTTCTTTAGGCCATGGTATTGATTTTT-AAAATT  948

seq1  TATTAACAATAATTATAATA-CTTAAG-GAG-TTATGTGCT-GGATAGCT  990
      |||||||||||||||||||| |||||| ||| ||||||||| ||||||||
seq2  TATTAACAATAATTATAATACCTTAAGTGAGTTTATGTGCTGGGATAGCT  998

seq1  TTATG-TCAACCTTATAGAAG-TTAATA-TCATCTGTGGGGAG-TAAACC  1036
      ||||| ||||||||||||||| |||||| |||||||||||||| ||||||
seq2  TTATGTTCAACCTTATAGAAGTTTAATATTCATCTGTGGGGAGTTAAACC  1048

seq1  TCAGTTAAAATAAAAAGGCC  1056
      ||||||||||||||||||||
seq2  TCAGTTAAAATAAAAAGGCC  1068