BAC Information

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BAC

Clone NameB6Ng01-153G18
Chromosome6 (Build37)
Map Location 52,778,607 - 52,911,316
singlet/doubletdoublet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153G18.bB6Ng01-153G18.g
ACCDH948740DH948741
length1,036942
definitionDH948740|Mus musculus domesticus DNA, BAC clone: B6Ng01-153G18, 5' end.DH948741|Mus musculus domesticus DNA, BAC clone: B6Ng01-153G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,910,276 - 52,911,316)(52,778,607 - 52,779,545)
sequence
gaattcacaggatttagtcatgtaatgtaaggcatatcaagtgctgtgtc
ataaatgcacctaaggataactcagtcactggcctggaccccagagcagg
gcttttgtagcgctaaggaaagtatcttgttaaaaaatagccgctaaaag
attttgtgtgggttaagaatagattgtttgtgagtctcacttgctttcta
tatcagaatcccctgggcctgtaatccctctgtctcacctacgtggagag
gcgtctaaagtgccgacctctgtgttttctgtacctagcctactcatgag
acgtcttctgtggccttagtagagctttattggtgtcctccagtgttgtt
gtaaaccctagcagccaagcactgggatcaggacaagggccagagagtgg
ctttttcataaattagattttaatcaaatatttgctataagtaatatgat
gagggaatacttagcctccttctggacagtgctgatgagacagggaaaca
ttcagggagggcttgtttatcctaactgggctttgttcaaatccagtctt
tcctgcccatcctctgtggtctggaaaatgagagcctgcttggggtgcca
ggtggacacagaactagcattttcttctctacatagctggcgaaggcagt
ggcttggcagagactggtccaggctgggtgagacctgtacaaaggggtta
cctggaagggacatacgtggtcttgaatagagcctgaccctgagtaccta
attttccaaatgctaattctccttggttctgatgagctgaggacaacttt
ggctgcagtgtgaggggcttttgcagaagtttctctaaaaggcggttatc
tctttgaagtcctaaatgggatcacagtctgactttttcaattagaatct
taaaacaggacacacagcatacaagagtagccgccctctgcgttgactgc
atcagccccctggagaataacatgcttttgcaccggccacccatggccct
cagggtactctttgctgtctggtggatgatgaccac
gaattcatgcttcttcatggaatgctggaagcagtcagacaaagtgctag
gcttggctattaaaactgggaaagcctagggagggagcagcaaggccccc
accaccccaacctggcttgtgattggcacagggcatttccagccactgct
gctaaattacacagccggtcctggcctcattcatgcaattaaccagactt
tcttcaagtctgtatcgacccctgggagagcatgaggaatttgtgaagag
acattatatctttgaggatactgggcagccatttagtgggtaattcactg
aaaggaacccagtgtctttgaaggagttaattcaactcctgaggcggggg
agtcagcctcctcatcaggcctagtggggtgaagggagggcattacagaa
cagataactactttttaaaaaagcttttctaaccatgcaattcattaaga
aaaggaaaactctatgataccagaaaaggctgtgctttccagatgagtag
gtcttagcagtgaggtgtttccaggtctggcttatcttggctctgaatga
gaagagtccacatgtgaaaagagcttgctaggcttggccacctgaggggc
acccagatgcagggcagtctgacctccttgtcagagcacatctcaaaccc
aatcttccctccacctcctgcctgatccaaatcttcagaacaaaattggc
agcccactggtggaaccttccagatacttcattactccttaaattcaagc
cagtacatttcctttctgaccagagatctcctctctctgactgaaaggac
actgtctcctattcctttctcagggagatggcagggaggttagcctctct
tagctttccttttagctgtaacgtgggagggggaagggctctgcaattgt
ttatttccatctgttctggaagagtggaaagtggcttctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52910276_52911316
seq2: B6Ng01-153G18.b_49_1084 (reverse)

seq1  GTGGTCATCATCCACCCGACAGC-AAGAGTAACCCTGAGGGCCACGCGGT  49
      |||||||||||||||| |||||| |||||| ||||||||||||| | |||
seq2  GTGGTCATCATCCACCAGACAGCAAAGAGT-ACCCTGAGGGCCATG-GGT  48

seq1  GCCCGCTGGCAAAGCACTGCTAGTCTCCAGGCGGCTGGTGCAGTCACTGC  99
      | ||| ||  |||||| || || |||||||| ||||| ||||||||  ||
seq2  GGCCGGTGCAAAAGCA-TGTTATTCTCCAGGGGGCTGATGCAGTCAACGC  97

seq1  ACAGGGCGGCTACTCTTGCTGTGCGTGT-TGTCCTTGTTTTAAGATTCTA  148
      | |||||||||||||||| | ||| ||| ||||| |||||||||||||||
seq2  AGAGGGCGGCTACTCTTG-TATGC-TGTGTGTCC-TGTTTTAAGATTCTA  144

seq1  ATTGGAAAAGTCAGACTGTGATTCCATTTTAGGACTTCAAAGAGATAACC  198
      |||| ||||||||||||||||| ||| |||||||||||||||||||||||
seq2  ATTGAAAAAGTCAGACTGTGATCCCA-TTTAGGACTTCAAAGAGATAACC  193

seq1  GCCTTTTAGAGAAACTTCTGCAAAAGCCCCTCACACTGCAGCCAAAGTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAGAGAAACTTCTGCAAAAGCCCCTCACACTGCAGCCAAAGTTG  243

seq1  TCCTCAGCTCATCAGAACCAAGGAGAATTAGCATTTGGAAAATTAGGTAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCTCATCAGAACCAAGGAGAATTAGCATTTGGAAAATTAGGTAC  293

seq1  TCAGGGTCAGGCTCTATTCAAGACCACGTATGTCCCTTCCAGGTAACCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCAGGCTCTATTCAAGACCACGTATGTCCCTTCCAGGTAACCCC  343

seq1  TTTGTACAGGTCTCACCCAGCCTGGACCAGTCTCTGCCAAGCCACTGCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAGGTCTCACCCAGCCTGGACCAGTCTCTGCCAAGCCACTGCCT  393

seq1  TCGCCAGCTATGTAGAGAAGAAAATGCTAGTTCTGTGTCCACCTGGCACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAGCTATGTAGAGAAGAAAATGCTAGTTCTGTGTCCACCTGGCACC  443

seq1  CCAAGCAGGCTCTCATTTTCCAGACCACAGAGGATGGGCAGGAAAGACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGGCTCTCATTTTCCAGACCACAGAGGATGGGCAGGAAAGACTG  493

seq1  GATTTGAACAAAGCCCAGTTAGGATAAACAAGCCCTCCCTGAATGTTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACAAAGCCCAGTTAGGATAAACAAGCCCTCCCTGAATGTTTCC  543

seq1  CTGTCTCATCAGCACTGTCCAGAAGGAGGCTAAGTATTCCCTCATCATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCATCAGCACTGTCCAGAAGGAGGCTAAGTATTCCCTCATCATAT  593

seq1  TACTTATAGCAAATATTTGATTAAAATCTAATTTATGAAAAAGCCACTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATAGCAAATATTTGATTAAAATCTAATTTATGAAAAAGCCACTCT  643

seq1  CTGGCCCTTGTCCTGATCCCAGTGCTTGGCTGCTAGGGTTTACAACAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTTGTCCTGATCCCAGTGCTTGGCTGCTAGGGTTTACAACAACA  693

seq1  CTGGAGGACACCAATAAAGCTCTACTAAGGCCACAGAAGACGTCTCATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGACACCAATAAAGCTCTACTAAGGCCACAGAAGACGTCTCATGA  743

seq1  GTAGGCTAGGTACAGAAAACACAGAGGTCGGCACTTTAGACGCCTCTCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTAGGTACAGAAAACACAGAGGTCGGCACTTTAGACGCCTCTCCA  793

seq1  CGTAGGTGAGACAGAGGGATTACAGGCCCAGGGGATTCTGATATAGAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGTGAGACAGAGGGATTACAGGCCCAGGGGATTCTGATATAGAAAG  843

seq1  CAAGTGAGACTCACAAACAATCTATTCTTAACCCACACAAAATCTTTTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGACTCACAAACAATCTATTCTTAACCCACACAAAATCTTTTAG  893

seq1  CGGCTATTTTTTAACAAGATACTTTCCTTAGCGCTACAAAAGCCCTGCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTATTTTTTAACAAGATACTTTCCTTAGCGCTACAAAAGCCCTGCTC  943

seq1  TGGGGTCCAGGCCAGTGACTGAGTTATCCTTAGGTGCATTTATGACACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCAGGCCAGTGACTGAGTTATCCTTAGGTGCATTTATGACACAG  993

seq1  CACTTGATATGCCTTACATTACATGACTAAATCCTGTGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATATGCCTTACATTACATGACTAAATCCTGTGAATTC  1036

seq1: chr6_52778607_52779545
seq2: B6Ng01-153G18.g_68_1009

seq1  GAATTCATGCTTCTTCATGGAATGCTGGAAGCAGTCAGACAAAGTGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTTCTTCATGGAATGCTGGAAGCAGTCAGACAAAGTGCTAG  50

seq1  GCTTGGCTATTAAAACTGGGAAAGCCTAGGGAGGGAGCAGCAAGGCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTATTAAAACTGGGAAAGCCTAGGGAGGGAGCAGCAAGGCCCCC  100

seq1  ACCACCCCAACCTGGCTTGTGATTGGCACAGGGCATTTCCAGCCACTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCAACCTGGCTTGTGATTGGCACAGGGCATTTCCAGCCACTGCT  150

seq1  GCTAAATTACACAGCCGGTCCTGGCCTCATTCATGCAATTAACCAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATTACACAGCCGGTCCTGGCCTCATTCATGCAATTAACCAGACTT  200

seq1  TCTTCAAGTCTGTATCGACCCCTGGGAGAGCATGAGGAATTTGTGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGTCTGTATCGACCCCTGGGAGAGCATGAGGAATTTGTGAAGAG  250

seq1  ACATTATATCTTTGAGGATACTGGGCAGCCATTTAGTGGGTAATTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATATCTTTGAGGATACTGGGCAGCCATTTAGTGGGTAATTCACTG  300

seq1  AAAGGAACCCAGTGTCTTTGAAGGAGTTAATTCAACTCCTGAGGCGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACCCAGTGTCTTTGAAGGAGTTAATTCAACTCCTGAGGCGGGGG  350

seq1  AGTCAGCCTCCTCATCAGGCCTAGTGGGGTGAAGGGAGGGCATTACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCTCCTCATCAGGCCTAGTGGGGTGAAGGGAGGGCATTACAGAA  400

seq1  CAGATAACTACTTTTTAAAAAAGCTTTTCTAACCATGCAATTCATTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACTACTTTTTAAAAAAGCTTTTCTAACCATGCAATTCATTAAGA  450

seq1  AAAGGAAAACTCTATGATACCAGAAAAGGCTGTGCTTTCCAGATGAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAACTCTATGATACCAGAAAAGGCTGTGCTTTCCAGATGAGTAG  500

seq1  GTCTTAGCAGTGAGGTGTTTCCAGGTCTGGCTTATCTTGGCTCTGAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGCAGTGAGGTGTTTCCAGGTCTGGCTTATCTTGGCTCTGAATGA  550

seq1  GAAGAGTCCACATGTG-AAAGAGCTTGCTAGGCTTGGCCACCTGAGGGGC  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAAGAGTCCACATGTGAAAAGAGCTTGCTAGGCTTGGCCACCTGAGGGGC  600

seq1  ACCCAGATGCAGGGCAGTCTGACCTCCTTGTCAGAGCACATCTCAAACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATGCAGGGCAGTCTGACCTCCTTGTCAGAGCACATCTCAAACCC  650

seq1  AATCTTCCCTCCACCTCCTGCCTGATCCAAATCTTCAGAACAAAATTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCCTCCACCTCCTGCCTGATCCAAATCTTCAGAACAAAATTGGC  700

seq1  AGCCCACTGGTGGAACCTTCCAGATACTTCATTAC-CCTTAAATTCAAGC  748
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCCCACTGGTGGAACCTTCCAGATACTTCATTACTCCTTAAATTCAAGC  750

seq1  CAGTACATTTCCTTTCTGACCAGAGATCTCCTCTCTCTGACTG-AAGGAC  797
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGTACATTTCCTTTCTGACCAGAGATCTCCTCTCTCTGACTGAAAGGAC  800

seq1  ACTGTCTCCTATTCC-TTCTCAGGGAGATGGCAGGGAGGTTAGCCTCTCT  846
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCCTATTCCTTTCTCAGGGAGATGGCAGGGAGGTTAGCCTCTCT  850

seq1  TAGCTTTCCTTTTAGCTGTAACGTGGGAGGGGGAAGGGCTCTGCAATTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTCCTTTTAGCTGTAACGTGGGAGGGGGAAGGGCTCTGCAATTGT  900

seq1  TTATTTCCATCTGTTCTGGAAGAGTGTAAAGTGGCTCTCTATG  939
      |||||||||||||||||||||||||| ||||||||| ||||||
seq2  TTATTTCCATCTGTTCTGGAAGAGTGGAAAGTGGCT-TCTATG  942