BAC Information

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BAC

Clone NameB6Ng01-153I14
Chromosome6 (Build37)
Map Location 143,768,578 - 143,895,838
singlet/doubletdoublet
Overlap geneSox5
Upstream geneSt8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153I14.bB6Ng01-153I14.g
ACCDH948822DH948823
length1,143470
definitionDH948822|Mus musculus domesticus DNA, BAC clone: B6Ng01-153I14, 5' end.DH948823|Mus musculus domesticus DNA, BAC clone: B6Ng01-153I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,894,342 - 143,895,838)(143,768,578 - 143,769,053)
sequence
gaattcttgctaaagatcgcgtgtatatatttcagtagctgtatgtgact
gaagagacacaatggttgtgaatacttccctcatttctgctgccaaaatt
tgttgtcctccattcccttaaatatcaaacaggttagcaaacagcattct
tagactgttgtgttctagaatgaaatgtcacagactaagtgacttaggca
acaggaatggttcttacaagcatagaagctaggagatgaagcagttctta
tgaagcctctttcttcagcgtacatgatacgtcctcccctgctcgcccca
gaggtatgtctgtgtcctaaacatcttcctctaaggactcatgtcagggc
caggaagatgccccagagtgcaaaaactatttctgtacaaacacaatagc
ctgaattcatgtcatgggatccatgctagattcactgattctcgcctgta
atcatagcactctgaagtcgagaaggaaaaccagagaatcagccagaagc
ttgtgggccagttagcctagagaacgaagcacaggggccagagagcaaga
tctagccttccttcacaagtgggagacaagaactgactcactaaagtggt
tcgatgattgcagcacctataacatcacacacacacacattaattttaaa
caatggacttttcttagattagggtccgtcactgaatgcattttactaat
tcatttcattaactccatgtacagccactgaggtcctttggatttgggtt
tcagtatatcaacaggagctagacaatgaattcaaccaataacaaatgtc
tattattacttattgcatatgactgtttcatatatatccatacatttaca
tatgtgtcctacatgtatgataagagtgcatttatttagatataaataca
aagaaaggtatgtgaatgttgtcgtgcatgttagggatgaaaatgataat
attctgatatgtgcattgtatagtgtttagagtagtctggattttagccc
ctgactttatcacggtgcattataacctattacatatttagacgttagtg
gttgtgtaaaccgagccaccattgcagggggtttggctctcagcaaacat
atctatggagcctatgttcctgagaacaccatctgatacaggt
acttaccaggaacagacatcagaggagatttcaggtggggtgtttatgcc
agaagctatatcaaaatggttttgtgatctcagtaagttgatcttgaagt
gcactcaaagaaaccccaagagttgggcattcccccttcctctgagagct
ataatttaaaaaagaaataaagaaaagatgtgttagtttgtttatttggt
ggacagaagtagagactctttttattaatccatgctactccacccagagt
gtatcctcactaacccttcctctaagacaccatctctgcaccttcactgt
gccttgcccaagggttcaccatgtcttaccttctatactcaataggcagc
tttaggaaaaggaatatcttgggcttttccttcaaacatatgcaagaatg
ctactgctactactatattagtaggcagactatagtagtagtagtagtag
tagtggtagtggtagtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143894342_143895838
seq2: B6Ng01-153I14.b_43_1185 (reverse)

seq1  ACCTGTATCAGAATGTGAGTGTGAAGCCTGGGCAGGGGAAAGGAACCCAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTAACGGATGAGCCACGGAAGAAAGCAGAGAGGAGGAACCTTTTCCACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCACCATGAAAGAGTTTCAGATGCTCGTCATGGAAGGCAACAGAGGAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AACTGAGTGTGGCCAGGGTGCTTCCTGCCTGTGGGGCTGAGACAGAAACT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATCAGTTCTAGGCCACCCTGCGCTATGTTGTGATTCTCAGTCCAGCCTGA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCTACACAGCAAGATCCCCCACCTCAAAAAACAAACAAACAAAAAACAAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CATATAAATGTGGTTTTAGCAATGCCACGAAAGAGATCAAGTAACAGGAG  350
                                                        
seq2  --------------------------------------------------  0

seq1  GAATAACTTGATTATCTAGATGTGTGTT-TCAGGAACACAAGGT-CATGA  398
           || ||  |||| ||||| ||||| ||||||||| | | | |||  
seq2  -----ACCTG--TATC-AGATG-GTGTTCTCAGGAACATAGGCTCCATAG  41

seq1  GTATGTTTGCATGAGAGC--AAACACCTGCAATGGTGGCTCGGGTTTACA  446
       ||||||||| |||||||  || | |||||||||||||||| ||||||||
seq2  ATATGTTTGC-TGAGAGCCAAACCCCCTGCAATGGTGGCTC-GGTTTACA  89

seq1  C-ACCACTAACGTCTAAATA-GTAATAGGTTAT-ATGCA-CGTGTAAAAG  492
      | |||||||||||||||||| |||||||||||| ||||| ||||  ||||
seq2  CAACCACTAACGTCTAAATATGTAATAGGTTATAATGCACCGTGATAAAG  139

seq1  TCAGGGGCTAAAATCCAGACTACTCTAACATCTTTTACAATGCACATATC  542
      |||||||||||||||||||||||||||| |   | |||||||||||||||
seq2  TCAGGGGCTAAAATCCAGACTACTCTAA-ACACTATACAATGCACATATC  188

seq1  AGAATATTATCATTTTCATTCCTTACATGCACGACAACATTCACATACCT  592
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  AGAATATTATCATTTTCATCCCTAACATGCACGACAACATTCACATACCT  238

seq1  TTCTTTGTATTTATATCTAAATAAATGCACTCTTATCATACATGTAGGAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTATTTATATCTAAATAAATGCACTCTTATCATACATGTAGGAC  288

seq1  ACATATGTAAATGTATGGATATATATGAAACAGTCATAAGCAATAAGTAA  692
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACATATGTAAATGTATGGATATATATGAAACAGTCATATGCAATAAGTAA  338

seq1  TAATAGACATTTGTTATTGGTTGAATTCATTGTCTAGCTCCTGTTGATAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGACATTTGTTATTGGTTGAATTCATTGTCTAGCTCCTGTTGATAT  388

seq1  ACTGAAACCCAAATCCAAAGGACCTCAGTGGCTGTACATGGAGTTAATGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACCCAAATCCAAAGGACCTCAGTGGCTGTACATGGAGTTAATGA  438

seq1  AATGAATTAGTAAAATGCATTCAGTGACGGACCCTAATCTAAGAAAAGTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTAGTAAAATGCATTCAGTGACGGACCCTAATCTAAGAAAAGTC  488

seq1  CATTGTTTAAAATTAATGTGTGTGTGTGTGATGTTATAGGTGCTGCAATC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTAAAATTAATGTGTGTGTGTGTGATGTTATAGGTGCTGCAATC  538

seq1  ATCGAACCACTTTAGTGAGTCAGTTCTTGTCTCCCACTTGTGAAGGAAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAACCACTTTAGTGAGTCAGTTCTTGTCTCCCACTTGTGAAGGAAGG  588

seq1  CTAGATCTTGCTCTCTGGCCCCTGTGCTTCGTTCTCTAGGCTAACTGGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTTGCTCTCTGGCCCCTGTGCTTCGTTCTCTAGGCTAACTGGCC  638

seq1  CACAAGCTTCTGGCTGATTCTCTGGTTTTCCTTCTCGACTTCAGAGTGCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTTCTGGCTGATTCTCTGGTTTTCCTTCTCGACTTCAGAGTGCT  688

seq1  ATGATTACAGGCGAGAATCAGTGAATCTAGCATGGATCCCATGACATGAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACAGGCGAGAATCAGTGAATCTAGCATGGATCCCATGACATGAA  738

seq1  TTCAGGCTATTGTGTTTGTACAGAAATAGTTTTTGCACTCTGGGGCATCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTATTGTGTTTGTACAGAAATAGTTTTTGCACTCTGGGGCATCT  788

seq1  TCCTGGCCCTGACATGAGTCCTTAGAGGAAGATGTTTAGGACACAGACAT  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCCTGACATGAGTCCTTAGAGGAAGATGTTTAGGACACAGACAT  838

seq1  ACCTCTGGGGCGAGCAGGGGAGGACGTATCATGTACGCTGAAGAAAGAGG  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGGGCGAGCAGGGGAGGACGTATCATGTACGCTGAAGAAAGAGG  888

seq1  CTTCATAAGAACTGCTTCATCTCCTAGCTTCTATGCTTGTAAGAACCATT  1292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAGAACTGCTTCATCTCCTAGCTTCTATGCTTGTAAGAACCATT  938

seq1  CCTGTTGCCTAAGTCACTTAGTCTGTGACATTTCATTCTAGAACACAACA  1342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGCCTAAGTCACTTAGTCTGTGACATTTCATTCTAGAACACAACA  988

seq1  GTCTAAGAATGCTGTTTGCTAACCTGTTTGATATTTAAGGGAATGGAGGA  1392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGAATGCTGTTTGCTAACCTGTTTGATATTTAAGGGAATGGAGGA  1038

seq1  CAACAAATTTTGGCAGCAGAAATGAGGGAAGTATTCACAACCATTGTGTC  1442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATTTTGGCAGCAGAAATGAGGGAAGTATTCACAACCATTGTGTC  1088

seq1  TCTTCAGTCACATACAGCTACTGAAATATATACACGCGATCTTTAGCAAG  1492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTCACATACAGCTACTGAAATATATACACGCGATCTTTAGCAAG  1138

seq1  AATTC  1497
      |||||
seq2  AATTC  1143

seq1: chr6_143768578_143769053
seq2: B6Ng01-153I14.g_71_546

seq1  GAATTCACTTACCAGGAACAGACATCAGAGGAGATTTCAGGTGGGGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACCAGGAACAGACATCAGAGGAGATTTCAGGTGGGGTGTT  50

seq1  TATGCCAGAAGCTATATCAAAATGGTTTTGTGATCTCAGTAAGTTGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGAAGCTATATCAAAATGGTTTTGTGATCTCAGTAAGTTGATCT  100

seq1  TGAAGTGCACTCAAAGAAACCCCAAGAGTTGGGCATTCCCCCTTCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGCACTCAAAGAAACCCCAAGAGTTGGGCATTCCCCCTTCCTCTG  150

seq1  AGAGCTATAATTTAAAAAAGAAATAAAGAAAAGATGTGTTAGTTTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATAATTTAAAAAAGAAATAAAGAAAAGATGTGTTAGTTTGTTTA  200

seq1  TTTGGTGGACAGAAGTAGAGACTCTTTTTATTAATCCATGCTACTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGACAGAAGTAGAGACTCTTTTTATTAATCCATGCTACTCCACC  250

seq1  CAGAGTGTATCCTCACTAACCCTTCCTCTAAGACACCATCTCTGCACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTATCCTCACTAACCCTTCCTCTAAGACACCATCTCTGCACCTT  300

seq1  CACTGTGCCTTGCCCAAGGGTTCACCATGTCTTACCTTCTATACTCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCCTTGCCCAAGGGTTCACCATGTCTTACCTTCTATACTCAATA  350

seq1  GGCAGCTTTAGGAAAAGGAATATCTTGGGCTTTTCCTTCAAACATATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTTAGGAAAAGGAATATCTTGGGCTTTTCCTTCAAACATATGCA  400

seq1  AGAATGCTACTGCTACTACTATATTAGTAGGCAGACTATAGTAGTAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTACTGCTACTACTATATTAGTAGGCAGACTATAGTAGTAGTAG  450

seq1  TAGTAGTAGTGGTAGTGGTAGTGGTA  476
      ||||||||||||||||||||||||||
seq2  TAGTAGTAGTGGTAGTGGTAGTGGTA  476