BAC Information

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BAC

Clone NameB6Ng01-154C04
Chromosome6 (Build37)
Map Location 33,528,433 - 33,572,069
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154C04.bB6Ng01-154C04.g
ACCDH949263DH949264
length1,1301,194
definitionDH949263|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C04, 5' end.DH949264|Mus musculus domesticus DNA, BAC clone: B6Ng01-154C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,528,433 - 33,529,557)(33,570,877 - 33,572,069)
sequence
gaattcactcttggagtagcataacatccgatagaagctggtgatggtag
cagttgaatttcatttaaaacaaccaaacaaacaaacaaccaaacaacca
acaaacagacaaaaccccaaaaccccactagggtggtgctggtagaagca
tatattccaatttctgaagtaatatccagctttctatattctaaactctc
tgcaactaattctctcaacaaaacagtgatgttaacttattagtgcctca
gcatgtgagcttggggattacttcctgcactgtgaccctttgatatttca
gctaattaccaattaagagccatttgaggaaggaatgtaagtccaggtgg
gcattgcaaaatctactttaagacttgtgatagcatcaagaaaacagcaa
ttttgtactttgcacaaatatgtgtcagtatcttgaaataaaatcctgct
agaattctggtatactcctttaagacaattatcttctcagtgactcagta
gcgcttaatggaaaacatgactgctactagcttcaaaccagctattctga
gggctggtgtgtgtgcattttatagtttgatgagtatcttaatgattttc
tttctaatgtttttgtgtgtgtatgtcttacctgtatgtctgtctgtggg
ttatttgtgggtctggtgctctaggatgccagaagagaacatcggatcag
ctgtacctggagttgcaaatggttttgaactacctcctggtcctctagaa
ggagcacctagccctttcatatactaaccttttttttttcctctcccaaa
tttagttttctaatattttgtttattgaatgtattagagatttttttgaa
aatatttcatttatatagccatagatttttaaaagatttttaatgatata
tatatatatatagatatatatatatatatatatatatatattgctcaaac
aataagaataccttctgccagagaggacatcagaatcttatacaatggtt
gtgaaccaccatgttggttgctggaattggactcgaggaattcttgaaaa
gcgctcttcaacactgaagccagttctctaggccctaaggtgtaatgttt
taattaaccaggattctggtctcccagtgt
gaattcagcaggaatcctttttttcttacaaggtgagcagtgagctcctg
taggagaatgaagtcagaagcgtcagtgtctcagagactgctctaagagc
tgaatgagcagttggctatgtccactttacagcctatggtgttggggaaa
ccttttcctgcctagagctttcccagagatttatgtaaggtgagaaaggc
attagaccacgcacatatgaagtgctggctgtcaacactctttattttag
gcatttaaaaattaactgtattgctattttaaattaggacaagatcataa
gatttttctaatcttacatagaagagaagaaagaacccccaaaagggggg
cacatatatgtgagctagctagcaagtaggatatgtgttaagactatttt
ctctccatttgaggcaaaatttatttcagttcagatcttgatcagagtca
ttaatcactctcttgtctagcatgatgcaggagcatctatttggtcttca
gatgtaaaacaaaaatttttagactttgactcacatgaatggggattatg
ttgtaaaacaaagtttaataccttgcgagagagaaagtttacaaacttat
caaataaaattaataaaaagctttcaatcaatctaaagaataacaaaaat
atatatttaatgtaacatttgcaaagtttaaacccaatatgaattttatt
tctacttactcttgatgctttgatcataatcaaattaaaaagctaatttt
gttcatctatgcaatcctcaatttctaacttggagggttgatttgtcttg
ctgcttgccacagggctgtgtaacctatactggcctcagatgtatggcag
atcccttgactcagcttcttgtgtgtgtggattgcaagtatagacatcca
tgcccagtttagtaaaaaaaatccttcagcttcctaatgctctacaatga
acaaaagaaaaatctaggtagaaaagccctgttcacacaatgctgcagga
tcaattgatgataaagggttatagttagcctaacacttgtacatcctatt
gtgaaatgtgaggattcatgaagctgtatgtgcgttcatagatgtgctat
gtatgatcgtagcaacgatttccacccaggcttccaccccttgcagtctg
cagtcaagccactggagtgcatgaccaagttaccaaccaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33528433_33529557
seq2: B6Ng01-154C04.b_39_1168

seq1  GAATTCACTCTTGGAGTAGCATAACAT-GGATAGAAGCTGGTGATGGTAG  49
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GAATTCACTCTTGGAGTAGCATAACATCCGATAGAAGCTGGTGATGGTAG  50

seq1  CAGTTGAATTTCATTTAAAACAACCAAACAAACAAACAACCAAACAACCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAATTTCATTTAAAACAACCAAACAAACAAACAACCAAACAACCA  100

seq1  ACAAACAGACAAAACCCCAAAACCCCACTAGGGTGGTGCTGGTAGAAGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGACAAAACCCCAAAACCCCACTAGGGTGGTGCTGGTAGAAGCA  150

seq1  TATATTCCAATTTCTGAAGTAATATCCAGCTTTCTATATTCTAAACTCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCAATTTCTGAAGTAATATCCAGCTTTCTATATTCTAAACTCTC  200

seq1  TGCAACTAATTCTCTCAACAAAACAGTGATGTTAACTTATTAGTGCCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTAATTCTCTCAACAAAACAGTGATGTTAACTTATTAGTGCCTCA  250

seq1  GCATGTGAGCTTGGGGATTACTTCCTGCACTGTGACCCTTTGATATTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAGCTTGGGGATTACTTCCTGCACTGTGACCCTTTGATATTTCA  300

seq1  GCTAATTACCAATTAAGAGCCATTTGAGGAAGGAATGTAAGTCCAGGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTACCAATTAAGAGCCATTTGAGGAAGGAATGTAAGTCCAGGTGG  350

seq1  GCATTGCAAAATCTACTTTAAGACTTGTGATAGCATCAAGAAAACAGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCAAAATCTACTTTAAGACTTGTGATAGCATCAAGAAAACAGCAA  400

seq1  TTTTGTACTTTGCACAAATATGTGTCAGTATCTTGAAATAAAATCCTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACTTTGCACAAATATGTGTCAGTATCTTGAAATAAAATCCTGCT  450

seq1  AGAATTCTGGTATACTCCTTTAAGACAATTATCTTCTCAGTGACTCAGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGGTATACTCCTTTAAGACAATTATCTTCTCAGTGACTCAGTA  500

seq1  GCGCTTAATGGAAAACATGACTGCTACTAGCTTCAAACCAGCTATTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTAATGGAAAACATGACTGCTACTAGCTTCAAACCAGCTATTCTGA  550

seq1  GGGCTGGTGTGTGTGCATTTTATAGTTTGATGAGTATCTTAATGATTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTGTGTGTGCATTTTATAGTTTGATGAGTATCTTAATGATTTTC  600

seq1  TTTCTAATGTTTTTGTGTGTGTATGTCTTACCTGTATGTCTGTCTGTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGTTTTTGTGTGTGTATGTCTTACCTGTATGTCTGTCTGTGGG  650

seq1  TTATTTGTGGGTCTGGTGCTCTAGGATGCCAGAAGAGAACATCGGATCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTGGGTCTGGTGCTCTAGGATGCCAGAAGAGAACATCGGATCAG  700

seq1  CTGTACCTGGAGTTGCAAATGGTTTTGAACTACCTCCTGGTCCTCTAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTGGAGTTGCAAATGGTTTTGAACTACCTCCTGGTCCTCTAGAA  750

seq1  GGAGCACCTAGCCCTTTCATATACTAACCTTTTTTTTTTCCTCTCCCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACCTAGCCCTTTCATATACTAACCTTTTTTTTTTCCTCTCCCAAA  800

seq1  TTTAGTTTTCTAATA-TTTGTTTATTGAATGTATTAGAGATATTTTTGAA  848
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TTTAGTTTTCTAATATTTTGTTTATTGAATGTATTAGAGATTTTTTTGAA  850

seq1  AATA-TTCATTTATATAGCCATAGATTTTTAAAAGATTTTTAATGATATA  897
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCATTTATATAGCCATAGATTTTTAAAAGATTTTTAATGATATA  900

seq1  TATATATATATATATATATATATATATATATATATATATA-TGCTCTAAC  946
      |||||||||||| ||||||||||||||||||||||||||| ||||| |||
seq2  TATATATATATAGATATATATATATATATATATATATATATTGCTCAAAC  950

seq1  TATATGTATACCTTCCTGCCAGAAGAGGACATCAGATCCTATTACAGATG  996
       ||| | ||||||| ||||||| |||||||||||||  ||  |||| |||
seq2  AATAAGAATACCTT-CTGCCAG-AGAGGACATCAGAATCTTATACA-ATG  997

seq1  GTTGTGAGCCACCATG-TGGTTGCTGGGTATTGAACTC-AGGACCTCTGG  1044
      ||||||| |||||||| |||||||| || |||| |||| ||||  ||| |
seq2  GTTGTGAACCACCATGTTGGTTGCT-GGAATTGGACTCGAGGAATTCTTG  1046

seq1  AAGAGCAGCTCTCAACCACTG-AGCCATGTCTCCAGCCCCAAAGTTGT-A  1092
      || ||| |||||  | ||||| |||||  |||| || ||| ||| ||| |
seq2  AAAAGC-GCTCTTCAACACTGAAGCCAGTTCTCTAGGCCCTAAGGTGTAA  1095

seq1  TGTTTTAA-TAACCAGGATTCT-GTCTCCCAGTGT  1125
      |||||||| ||||||||||||| ||||||||||||
seq2  TGTTTTAATTAACCAGGATTCTGGTCTCCCAGTGT  1130

seq1: chr6_33570877_33572069
seq2: B6Ng01-154C04.g_68_1261 (reverse)

seq1  GACCTTG-----------GGTCATTGCACTCAGTGTGGCTTTGACTGCAG  39
      |||||||           ||||| |||||||   ||||| ||||||||||
seq2  GACCTTGGTTGGTAACTTGGTCA-TGCACTC-CAGTGGC-TTGACTGCAG  47

seq1  ACCTGC-AGGAGTGG-AGCCTGGGTGTGACATCCGGTTCTTACCCTGGCC  87
      | |||| ||| |||| |||||||||| || |||  |||  |||   |  |
seq2  A-CTGCAAGGGGTGGAAGCCTGGGTG-GAAATC--GTTGCTAC---GATC  90

seq1  TGGGGTGGC----CTA-AAGAGTATTTTCAGCTTCACTGAAATCTCACAT  132
           | ||    |||  |  | |  | |||||||| ||||  |||||||
seq2  ATACATAGCACATCTATGAACGCACATACAGCTTCA-TGAATCCTCACAT  139

seq1  TTTCCACATAGGATGGTACAAGTGTTAGGCTAACTATAACCCTTTATCAT  182
      ||  || ||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCACA-ATAGGAT-GTACAAGTGTTAGGCTAACTATAACCCTTTATCAT  187

seq1  CAATTGATCCTGGCAGGCATTGTGTGAACAGGGCTTTTTCTACCTAGATT  232
      ||||||||||| ||| |||||||||||||||||| |||||||||||||||
seq2  CAATTGATCCT-GCA-GCATTGTGTGAACAGGGC-TTTTCTACCTAGATT  234

seq1  TTTCTTTTGTTCATTGTAGAGCATTAGGAAGCTGAAGGATTTTTTTTACT  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTTCATTGTAGAGCATTAGGAAGCTGAAGGATTTTTTTTACT  284

seq1  AAAACTGGGCATGGATGTCTATACTTGCAATCCACACACACAAGAAGCTG  332
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAACTGGGCATGGATGTCTATACTTGCAATCCACACACACAAGAAGCTG  333

seq1  AGTCAAGGGATCTGCCATACATCTGAGGCCAGTATAGGTTACACAGCCCT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGGATCTGCCATACATCTGAGGCCAGTATAGGTTACACAGCCCT  383

seq1  GTGGCAAGCAGCAAGACAAATCAACCCTCCAAGTTAGAAATTGAGGATTG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAGCAGCAAGACAAATCAACCCTCCAAGTTAGAAATTGAGGATTG  433

seq1  CATAGATGAACAAAATTAGCTTTTTAATTTGATTATGATCAAAGCATCAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGAACAAAATTAGCTTTTTAATTTGATTATGATCAAAGCATCAA  483

seq1  GAGTAAGTAGAAATAAAATTCATATTGGGTTTAAACTTTGCAAATGTTAC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGTAGAAATAAAATTCATATTGGGTTTAAACTTTGCAAATGTTAC  533

seq1  ATTAAATATATATTTTTGTTATTCTTTAGATTGATTGAAAGCTTTTTATT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATATATTTTTGTTATTCTTTAGATTGATTGAAAGCTTTTTATT  583

seq1  AATTTTATTTGATAAGTTTGTAAACTTTCTCTCTCGCAAGGTATTAAACT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTTGATAAGTTTGTAAACTTTCTCTCTCGCAAGGTATTAAACT  633

seq1  TTGTTTTACAACATAATCCCCATTCATGTGAGTCAAAGTCTAAAAATTTT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACAACATAATCCCCATTCATGTGAGTCAAAGTCTAAAAATTTT  683

seq1  TGTTTTACATCTGAAGACCAAATAGATGCTCCTGCATCATGCTAGACAAG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACATCTGAAGACCAAATAGATGCTCCTGCATCATGCTAGACAAG  733

seq1  AGAGTGATTAATGACTCTGATCAAGATCTGAACTGAAATAAATTTTGCCT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATTAATGACTCTGATCAAGATCTGAACTGAAATAAATTTTGCCT  783

seq1  CAAATGGAGAGAAAATAGTCTTAACACATATCCTACTTGCTAGCTAGCTC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAGAGAAAATAGTCTTAACACATATCCTACTTGCTAGCTAGCTC  833

seq1  ACATATATGTGCCCCCCTTTTGGGGGTTCTTTCTTCTCTTCTATGTAAGA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGTGCCCCCCTTTTGGGGGTTCTTTCTTCTCTTCTATGTAAGA  883

seq1  TTAGAAAAATCTTATGATCTTGTCCTAATTTAAAATAGCAATACAGTTAA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAATCTTATGATCTTGTCCTAATTTAAAATAGCAATACAGTTAA  933

seq1  TTTTTAAATGCCTAAAATAAAGAGTGTTGACAGCCAGCACTTCATATGTG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGCCTAAAATAAAGAGTGTTGACAGCCAGCACTTCATATGTG  983

seq1  CGTGGTCTAATGCCTTTCTCACCTTACATAAATCTCTGGGAAAGCTCTAG  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTCTAATGCCTTTCTCACCTTACATAAATCTCTGGGAAAGCTCTAG  1033

seq1  GCAGGAAAAGGTTTCCCCAACACCATAGGCTGTAAAGTGGACATAGCCAA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAAAGGTTTCCCCAACACCATAGGCTGTAAAGTGGACATAGCCAA  1083

seq1  CTGCTCATTCAGCTCTTAGAGCAGTCTCTGAGACACTGACGCTTCTGACT  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATTCAGCTCTTAGAGCAGTCTCTGAGACACTGACGCTTCTGACT  1133

seq1  TCATTCTCCTACAGGAGCTCACTGCTCACCTTGTAAGAAAAAAAGGATTC  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCCTACAGGAGCTCACTGCTCACCTTGTAAGAAAAAAAGGATTC  1183

seq1  CTGCTGAATTC  1193
      |||||||||||
seq2  CTGCTGAATTC  1194