BAC Information

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BAC

Clone NameB6Ng01-154K04
Chromosome6 (Build37)
Map Location 121,286,299 - 121,430,713
singlet/doubletdoublet
Overlap geneSlc6a13, Slc6a12, Iqsec3
Upstream geneCcdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18
Downstream geneLOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154K04.bB6Ng01-154K04.g
ACCDH949629DH949630
length1,130785
definitionDH949629|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K04, 5' end.DH949630|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,429,559 - 121,430,713)(121,286,299 - 121,287,083)
sequence
gaattccacagtagagaaatagaaacttagaacttttctgcacacgaacc
agttgtggactctctgagttaatcaccatttattgcaaacagaaacttcc
ctgataagaagagaagcaataattataaatataacaataactcattagga
gctggttcaatactatgtccattaagcagaatactagtgctgggttcttt
cctagtgcctatctagtcaaacagttcttgattttgaaatattttattgc
caattgtgtgtgtgtgtagaaaatataaagtatgtatttctgtgaatata
atatatgtgatacctatacatacacatgtgatatgtatatatttgtatac
acaatttattcaaatacagttataattttatttttcttattttcttattt
attcattttgccatcacagagatcaagtccagggcctcttgcacgatatg
cagggtaatcatcatttaaatacctgtccctatgatgctattttagctaa
tgagacaaccagctcactgcctggagtgccattttgtatgactgcatttt
tacccacaacaaaaagcagttgtttgtttccttttgtcttttgatctcag
caacttactacctcataattttatgtgaacatattatttgaacatatatt
gtgcccaaagccttggacttgggtagaatggagtaataagtaggtaccca
gattcatgagacattcatagagtttacagtcttccaggtgaagacagcac
cacaactaactatgcaacagagagaacagtgacaaccagagagagctaga
gccagccgacatgggaattaccaggaagaagagacattggaagctaccca
tggatggcaaagggactttggtaccgagatttcatctgatagggtttaga
cctgtagggattcgagatagaaagaacactttagacagagtagaaaatat
tggaaagatagagatgtggtgacttgagaaagagtaaatcgtcattgatg
accagttggactattagtggatcatcaggagaaagctagaacttcacatg
ctgaaagagaagttgagtaagcagagaagatgaaagcagcgaacctgagg
agctccattcccagattgctagatggagat
gaattcctcccttccctttctcagagggattagcccaggctcaggtcatg
gtcagaggagttgaccaatagtacagcgtgaggctgacttcctaggcagg
actggcgtacagtgctgctcagaatcctgcctgtgagcacagaagacagt
ccctagagagcctgacccacgggccgtatcagcaccatctcagcatctca
tgggaggaagatttacacctactttacagacaaacagcctcaagatggga
aatactcagaccagctaggatgtttcagagcattgggactcttggtgcga
gagatggcacacaattaagtccttactagagcgactgaggagagagacag
agggtgtaccctggacatgctacccaggaatggattttgagcagaatgtg
ggtggagcttggcgactgactgacctagataagcaccttggcatgctggg
agaacaaactctaccgggcagctgtgggggtggggtggctgatggggctc
caacaaaacctcttcctcttccgttttactgcaggcgaccttcctgttct
ccctgatcaaatacacgccactgacctacaacaagaagtacacgtaccca
tggtggggggatgccctagggtggctcctagctctgtcctccatgatctg
cattcctgcctggagcatctacaagctgaggactctcaagggcccactca
gagaggtaggaggaaagcagtgggggatgggaacctcactggatggcagg
tgggttgctattgacggggggtgggttggggcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121429559_121430713
seq2: B6Ng01-154K04.b_46_1175 (reverse)

seq1  ATCTCCATCCTAGGCCATTCTGTGAATGGTGGCTCCTCAGTGTTCTGCTG  50
      |||||||| ||||  || |||| ||||||  ||||||||| |||| ||||
seq2  ATCTCCAT-CTAG--CAATCTGGGAATGG-AGCTCCTCAG-GTTC-GCTG  44

seq1  CTTTCTGTCTTTCTCTGCCTTACTTCCAACTTCTCTTTCAGCATTGTGGA  100
      |||||  || ||||||| ||||||  ||||||||||||||||| |||| |
seq2  CTTTC-ATC-TTCTCTG-CTTACT--CAACTTCTCTTTCAGCA-TGTGAA  88

seq1  AGTCTAGCCTTTCTCCTGATGATTCCAACTAAATAGTCCAACTGGTTCCA  150
        ||||| |||||||||||||||  | ||| |||||||||||||||    
seq2  GTTCTAG-CTTTCTCCTGATGAT--CCACT-AATAGTCCAACTGGT---C  131

seq1  ATCAATTGGACGATTTACTCTTTCTCCAAGTCAACCACATCTTCTATCTT  200
      ||||||  ||||||||||||||||| |||||| |||||||| ||||||||
seq2  ATCAAT--GACGATTTACTCTTTCT-CAAGTC-ACCACATC-TCTATCTT  176

seq1  TCCAATATTTTCTACTCTGTCTAAAGTGTTCTTTCTTATCTCGAATCCCT  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCAATATTTTCTACTCTGTCTAAAGTGTTCTTTC-TATCTCGAATCCCT  225

seq1  ACAGGTCTAAACCCTATCAGATGAAATCTCGGTACCAAAGTCCCTTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTAAACCCTATCAGATGAAATCTCGGTACCAAAGTCCCTTTGCC  275

seq1  ATCCATGGGTAGCTTCCAATGTCTCTTCTTCCTGGTAATTCCCATGTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGGTAGCTTCCAATGTCTCTTCTTCCTGGTAATTCCCATGTCGG  325

seq1  CTGGCTCTAGCTCTCTCTGGTTGTCACTGTTCTCTCTGTTGCATAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTAGCTCTCTCTGGTTGTCACTGTTCTCTCTGTTGCATAGTTAG  375

seq1  TTGTGGTGCTGTCTTCACCTGGAAGACTGTAAACTCTATGAATGTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGCTGTCTTCACCTGGAAGACTGTAAACTCTATGAATGTCTCAT  425

seq1  GAATCTGGGTACCTACTTATTACTCCATTCTACCCAAGTCCAAGGCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGGTACCTACTTATTACTCCATTCTACCCAAGTCCAAGGCTTTG  475

seq1  GGCACAATATATGTTCAAATAATATGTTCACATAAAATTATGAGGTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAATATATGTTCAAATAATATGTTCACATAAAATTATGAGGTAGTA  525

seq1  AGTTGCTGAGATCAAAAGACAAAAGGAAACAAACAACTGCTTTTTGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGAGATCAAAAGACAAAAGGAAACAAACAACTGCTTTTTGTTGT  575

seq1  GGGTAAAAATGCAGTCATACAAAATGGCACTCCAGGCAGTGAGCTGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAAATGCAGTCATACAAAATGGCACTCCAGGCAGTGAGCTGGTTG  625

seq1  TCTCATTAGCTAAAATAGCATCATAGGGACAGGTATTTAAATGATGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAGCTAAAATAGCATCATAGGGACAGGTATTTAAATGATGATTA  675

seq1  CCCTGCATATCGTGCAAGAGGCCCTGGACTTGATCTCTGTGATGGCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATATCGTGCAAGAGGCCCTGGACTTGATCTCTGTGATGGCAAAA  725

seq1  TGAATAAATAAGAAAATAAGAAAAATAAAATTATAACTGTATTTGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATAAGAAAATAAGAAAAATAAAATTATAACTGTATTTGAATAA  775

seq1  ATTGTGTATACAAATATATACATATCACATGTGTATGTATAGGTATCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTATACAAATATATACATATCACATGTGTATGTATAGGTATCACA  825

seq1  TATATTATATTCACAGAAATACATACTTTATATTTTCTACACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATATTCACAGAAATACATACTTTATATTTTCTACACACACACAC  875

seq1  AATTGGCAATAAAATATTTCAAAATCAAGAACTGTTTGACTAGATAGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCAATAAAATATTTCAAAATCAAGAACTGTTTGACTAGATAGGCA  925

seq1  CTAGGAAAGAACCCAGCACTAGTATTCTGCTTAATGGACATAGTATTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAAGAACCCAGCACTAGTATTCTGCTTAATGGACATAGTATTGAA  975

seq1  CCAGCTCCTAATGAGTTATTGTTATATTTATAATTATTGCTTCTCTTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCTAATGAGTTATTGTTATATTTATAATTATTGCTTCTCTTCTT  1025

seq1  ATCAGGGAAGTTTCTGTTTGCAATAAATGGTGATTAACTCAGAGAGTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAAGTTTCTGTTTGCAATAAATGGTGATTAACTCAGAGAGTCCA  1075

seq1  CAACTGGTTCGTGTGCAGAAAAGTTCTAAGTTTCTATTTCTCTACTGTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGTTCGTGTGCAGAAAAGTTCTAAGTTTCTATTTCTCTACTGTGG  1125

seq1  AATTC  1155
      |||||
seq2  AATTC  1130

seq1: chr6_121286299_121287083
seq2: B6Ng01-154K04.g_68_852

seq1  GAATTCCTCCCTTCCCTTTCTCAGAGGGATTAGCCCAGGCTCAGGTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTTCCCTTTCTCAGAGGGATTAGCCCAGGCTCAGGTCATG  50

seq1  GTCAGAGGAGTTGACCAATAGTACAGCGTGAGGCTGACTTCCTAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGAGTTGACCAATAGTACAGCGTGAGGCTGACTTCCTAGGCAGG  100

seq1  ACTGGCGTACAGTGCTGCTCAGAATCCTGCCTGTGAGCACAGAAGACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCGTACAGTGCTGCTCAGAATCCTGCCTGTGAGCACAGAAGACAGT  150

seq1  CCCTAGAGAGCCTGACCCACGGGCCGTATCAGCACCATCTCAGCATCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAGAGCCTGACCCACGGGCCGTATCAGCACCATCTCAGCATCTCA  200

seq1  TGGGAGGAAGATTTACACCTACTTTACAGACAAACAGCCTCAAGATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAAGATTTACACCTACTTTACAGACAAACAGCCTCAAGATGGGA  250

seq1  AATACTCAGACCAGCTAGGATGTTTCAGAGCATTGGGACTCTTGGTGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCAGACCAGCTAGGATGTTTCAGAGCATTGGGACTCTTGGTGCGA  300

seq1  GAGATGGCACACAATTAAGTCCTTACTAGAGCGACTGAGGAGAGAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCACACAATTAAGTCCTTACTAGAGCGACTGAGGAGAGAGACAG  350

seq1  AGGGTGTACCCTGGACATGCTACCCAGGAATGGATTTTGAGCAGAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTACCCTGGACATGCTACCCAGGAATGGATTTTGAGCAGAATGTG  400

seq1  GGTGGAGCTTGGCGACTGACTGACCTAGATAAGCACCTTGGCATGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCTTGGCGACTGACTGACCTAGATAAGCACCTTGGCATGCTGGG  450

seq1  AGAACAAACTCTACCGGGCAGCTGTGGGGGTGGGGTGGCTGATGGGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAACTCTACCGGGCAGCTGTGGGGGTGGGGTGGCTGATGGGGCTC  500

seq1  CAACAAAACCTCTTCCTCTTCCGTTTTACTGCAGGCGACCTTCCTGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACCTCTTCCTCTTCCGTTTTACTGCAGGCGACCTTCCTGTTCT  550

seq1  CCCTGATCAAATACACGCCACTGACCTACAACAAGAAGTACACGTACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCAAATACACGCCACTGACCTACAACAAGAAGTACACGTACCCA  600

seq1  TGGTGGGGGGATGCCCTAGGGTGGCTCCTAGCTCTGTCCTCCATGATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGGGATGCCCTAGGGTGGCTCCTAGCTCTGTCCTCCATGATCTG  650

seq1  CATTCCTGCCTGGAGCATCTACAAGCTGAGGACTCTCAAGGGCCCACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGCCTGGAGCATCTACAAGCTGAGGACTCTCAAGGGCCCACTCA  700

seq1  GAGAGGTAGGAGGAAAGCAGTGGGGGATGGGAACCTCACTGGATGGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTAGGAGGAAAGCAGTGGGGGATGGGAACCTCACTGGATGGCAGG  750

seq1  TGGGTTGCTATTGACGGGGGGTGGGTTGGGGCGGG  785
      |||||||||||||||||||||||||||||||||||
seq2  TGGGTTGCTATTGACGGGGGGTGGGTTGGGGCGGG  785