BAC Information

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BAC

Clone NameB6Ng01-154M12
Chromosome6 (Build37)15 (Build37)
Map Location 18,835,448 - 18,835,96889,175,074 - 89,175,339
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154M12.bB6Ng01-154M12.g
ACCDH949735DH949736
length9911,074
definitionDH949735|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M12, 5' end.DH949736|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,448 - 18,835,968)(89,175,074 - 89,175,339)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagtttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttccttaatttctttcttcagagatttgaagttttatcata
cagatctttcacttccttagttagagtcacgccaagatattttatattat
ttgtgactatgagaaggttgtgtttccctaatttctttctc
gaattccttgtgctggtgaggggcatgcttcctggttgaaacagaggttc
agagaacagactatctcaggtcaccgtatatgggacaaggctaaatctgt
gaattggagaggatgtgtggagcacaggaagattcacccagcaagatatg
taggacctggctggaccgagaggttggatagaactgtgggatcttttgta
catgtctaaccctgccaaaactgaagtccccttaatgttattcgtaggta
tcctatatatgtcattctgcatatttaaaattatctctagattatttgta
acaaccaattcaatataaatgttatgtagtttctatagtgtattatttag
gaaataatgaaactagagcgagaatggtacgtttatagatcctatcttca
ccaaggtcatagaagaaaactttcccaagccaatgaactataccaaaaca
cacataagaagcacatggaacaccaaatagacaagattgtaaaagaaact
ccacacagaatatcacagcttaatcactatctatacagaacaaaggaaga
ggattgaaagcagcaaggaaaacacacaagtcacataaaatggaaaaccc
atcagggtaagtgctggatttctagtcaaagcattgaaagcctgaagagc
acttaaagaggagtccctgaaggggagcagtgtacctcaggttctaaaag
gccacaacagtgattagagactacttactgtgtcctgcaaaactgcctgc
cactgcctccgtcagcaaatcctaccggcgtgcaccaccactaccagcta
tagctgtctcttgtgagactaggccggggcctagcaaacacagaagtgga
tgctcacagtcagctattggatggatcacagggtccccaatggaggagct
agagaaagtaccaagagctcaagggacctgcaccctataggtggacacat
atgaactaaccagtacccccggagctcgtgtctctagctgtatagtagca
gaagatgctagtctgcatcatgaaagagagcccattgtctgcaaacttta
aatgcctcatacagggatgccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835448_18835968
seq2: B6Ng01-154M12.b_51_572 (reverse)

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100

seq1  GGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGT  150
      |||||||||| |||||||||||| |||||||||||||||||||||| |||
seq2  GGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGT  150

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250

seq1  GAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAG  299
       ||||||||| ||||||||||||||||||||||| |||||||| || | |
seq2  CAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCG  300

seq1  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  350

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  400

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  450

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGG  499
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGG  500

seq1  CTCAGAACTGAACAAAGAATTC  521
      ||||||||||||||||||||||
seq2  CTCAGAACTGAACAAAGAATTC  522

seq1: chr15_89175074_89175339
seq2: B6Ng01-154M12.g_893_1141 (reverse)

seq1  CCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGC  50
      |||||| |  ||||||| || ||||| |||||||||||    ||||||| 
seq2  CCTGGCAT--CCCTGTA-TGAGGCATTTAAAGTTTGCA--GACAATGGG-  44

seq1  CTCTCTTTCCAGTGATGGGCGACTAGGCCATCTTTTGGTACATATGCAGC  100
      |||||||||   |||| |  ||||||  |||||| || ||| ||| ||||
seq2  CTCTCTTTC--ATGAT-GCAGACTAG--CATCTTCTGCTAC-TATACAGC  88

seq1  TAGAGTCAAGAGCTCC-GGGGTACTGGTTAGTTCATATTGTTGTTCCACC  149
      ||||| || ||||||| |||||||||||||||||||| |||   ||||||
seq2  TAGAGACACGAGCTCCGGGGGTACTGGTTAGTTCATA-TGT--GTCCACC  135

seq1  TATAGGGTTGCAGATCTCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTC  199
      ||||||| ||||| || ||| |||| ||||| ||||||||||||||||||
seq2  TATAGGG-TGCAGGTCCCTTGAGCT-CTTGG-TACTTTCTCTAGCTCCTC  182

seq1  CATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTC  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGACCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTC  232

seq1  TGTGTTTGCTAGGCCCC  266
      |||||||||||||||||
seq2  TGTGTTTGCTAGGCCCC  249