BAC Information

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BAC

Clone NameB6Ng01-156A11
Chromosome6 (Build37)
Map Location 115,513,579 - 115,643,719
singlet/doubletdoublet
Overlap geneTsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik
Upstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg
Downstream geneTmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156A11.bB6Ng01-156A11.g
ACCDH950645DH950646
length1,0951,130
definitionDH950645|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A11, 5' end.DH950646|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,513,579 - 115,514,682)(115,642,582 - 115,643,719)
sequence
gaattcacagtgactttaccctttcctctgttggacaataacagccgtca
ctcaaatgtgctgatattgtgccttcccacagctggcttcttgcgaatct
gttcttgaaccatgccatggcagatgccacactgtaattctgtgccctcc
tttaggaagccatgtgatcacagagccaggctgatccatagctttagaga
gttctgtcttcaaaatatggttttccagtgtggtagaccctaacctaaat
acgctgtccccaaaagggaatgcttgctggtgaagccagcttcacagacc
tccctcctctgcctcctgaggacttgattccaaataaagtacctcagtga
ggttggagaggtaacagttaagagcactgactctaacctcaaaaggacca
aagctctgatcccagcacccacacagtgactcagagccatctgttactcc
agttccaggggatctgatgccctctttgggcctccttagatctgtggcac
acgcgtggtacacatacatacatgtaggcaaaacacccatacattaagat
aaaaattttaaatacaaataatttaaaccacctcaatgaaggcttgaact
caggtctgctagacctcattccatgctcccctgaagcaggttccctttct
gtcttgtactattctgaaccaagagatgcaaatgtgtcaaaatgtaggga
actagccgggcgtggtggcacacgcctttaatcccagcactcgggaggca
gaggcaggcagatttctgagtttgaggccagcctggtgtacaaagcaagt
tccaagacagccagggctatatagagaaaccctgtctcgaaaacaaacaa
acaagcaaaaaaaaaaaaaaaaaaaatgtagggaatttgtccacctaagg
gcagctttatctttcctacagtatttcagtcaccctgggccactcataaa
ctgcagtattcagtgtagaaaatggtggtggcagaatgatgccaaagtaa
gttcattggagtttggtgggcttggcagcactgaaagagtgtgaccttct
ctgggacattctagcctcctggagagcaggctgagccaggtgcaa
gaattcaaggtcatatttagggaatttgaaggcaacctgggctacatgag
actctgtctcatataaacagaaacaaacaagaggttaacacctttgccct
cggtcacacaggcagcaggtgacagatccaggcctcaaaaccacagtcac
acgtggctaaccacaagctattggttctttcttaattatagctggtttct
tgagccttccacaggagagggcaggcacagtcaagatagttgcaacactc
aggtaccacaaagaatcttaaaaggtcagccagactctctggttttaacc
cttagcctttcccaggcagcagtgcacacctggctgggtgtggtgcaagc
ctattaaccttagcacttgggagatggaagcagggtgattagaaggagtt
taaggtcgtccttagctacctcatgagttcaaggacagcctgaactgctt
gagacccagtgtaaaaacaggcaaagagaaaacaatggggctggagagat
gactgatggctcggtggctaagagcactgactgctcttgccgaggacctg
ggtttgatttctcacatacctggcagttacaggggatcagatgccctctt
ctggcctccttgggtactacacacatgtgctacacatgcaggcaaacaca
taaaaataaatgaataaataaataaataagcagcaacaaagaaaaatact
ttaagaagatggacatgggggccagtaggaaagcacttactgagccctcc
aggtcctgggttccatctccagcaccgaacacaaatgttttattgatgtt
gactggaagggaggtggaatggggtgtggccttcagggtctcatggtgtg
tttcctcctactatgatgctgctgatctttttcacgtttaataatttatg
ctccctctgtgacttattcatatctatgacctctccttccctcactgcca
ggggctgcctggccgtaggggaacagctgaggtgaaccaagagttggaca
aagcccaaaggactatacttccggtcttttaatcttctgagattgacgtg
tgacataaacctgaaggtttcggaaactaacactccctgtggatattggt
ggttgaaacactaggcttcttttttcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115513579_115514682
seq2: B6Ng01-156A11.b_42_1136

seq1  GAATTCACAGTGACTTTACCCTTTCCTCTGTTGGACAATAACAGCCGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGACTTTACCCTTTCCTCTGTTGGACAATAACAGCCGTCA  50

seq1  CTCAAATGTGCTGATATTGTGCCTTCCCACAGCTGGCTTCTTGCGAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGTGCTGATATTGTGCCTTCCCACAGCTGGCTTCTTGCGAATCT  100

seq1  GTTCTTGAACCATGCCATGGCAGATGCCACACTGTAATTCTGTGCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAACCATGCCATGGCAGATGCCACACTGTAATTCTGTGCCCTCC  150

seq1  TTTAGGAAGCCATGTGATCACAGAGCCAGGCTGATCCATAGCTTTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAGCCATGTGATCACAGAGCCAGGCTGATCCATAGCTTTAGAGA  200

seq1  GTTCTGTCTTCAAAATATGGTTTTCCAGTGTGGTAGACCCTAACCTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCTTCAAAATATGGTTTTCCAGTGTGGTAGACCCTAACCTAAAT  250

seq1  ACGCTGTCCCCAAAAGGGAATGCTTGCTGGTGAAGCCAGCTTCACAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGTCCCCAAAAGGGAATGCTTGCTGGTGAAGCCAGCTTCACAGACC  300

seq1  TCCCTCCTCTGCCTCCTGAGGACTTGATTCCAAATAAAGTACCTCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTCTGCCTCCTGAGGACTTGATTCCAAATAAAGTACCTCAGTGA  350

seq1  GGTTGGAGAGGTAACAGTTAAGAGCACTGACTCTAACCTCAAAAGGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGAGGTAACAGTTAAGAGCACTGACTCTAACCTCAAAAGGACCA  400

seq1  AAGCTCTGATCCCAGCACCCACACAGTGACTCAGAGCCATCTGTTACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGATCCCAGCACCCACACAGTGACTCAGAGCCATCTGTTACTCC  450

seq1  AGTTCCAGGGGATCTGATGCCCTCTTTGGGCCTCCTTAGATCTGTGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGGGATCTGATGCCCTCTTTGGGCCTCCTTAGATCTGTGGCAC  500

seq1  ACGCGTGGTACACATACATACATGTAGGCAAAACACCCATACATTAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGTGGTACACATACATACATGTAGGCAAAACACCCATACATTAAGAT  550

seq1  AAAAATTTTAAATACAAATAATTTAAACCACCTCAATGAAGGCTTGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTAAATACAAATAATTTAAACCACCTCAATGAAGGCTTGAACT  600

seq1  CAGGTCTGCTAGACCTCATTCCATGCTCCCCTGAAGCAGGTTCCCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCTAGACCTCATTCCATGCTCCCCTGAAGCAGGTTCCCTTTCT  650

seq1  GTCTTGTACTATTCTGAACCAAGAGATGCAAATGTGTCAAAATGTAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTACTATTCTGAACCAAGAGATGCAAATGTGTCAAAATGTAGGGA  700

seq1  ACTAGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCA  750

seq1  GAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTGTACAAAGCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTGTACAAAGCAAGT  800

seq1  TCCAAGACAGCCAGGGCTATATAGAGAAACCCTGTCTCGAAAAACAAACA  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCAAGACAGCCAGGGCTATATAGAGAAACCCTGTCTCG-AAAACAAACA  849

seq1  AACAAGCAAAAAAAAAAAAAAAAAAAAATGTAGGGAACTTGTCCACCTAA  900
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  AACAAGC-AAAAAAAAAAAAAAAAAAAATGTAGGGAATTTGTCCACCTAA  898

seq1  GGGCAGCTTTATCTTTCCTACAGTATTTCAGTCACCCTGGGCCACCCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGCAGCTTTATCTTTCCTACAGTATTTCAGTCACCCTGGGCCACTCATA  948

seq1  AACTGCAGTATTCAGTGTTAGAAAATGGTGGTGGCAAGAATGAGGCCAAA  1000
      ||||||||||||||||| ||||||||||||||||| ||||||| ||||||
seq2  AACTGCAGTATTCAGTG-TAGAAAATGGTGGTGGC-AGAATGATGCCAAA  996

seq1  GTAAGTTCATTGGAGGTTTGGTGGGGCTTTGGGCAGCACTGAGAGAAGTG  1050
      |||||||||||||| ||||||| ||||||  ||||||||||| || ||||
seq2  GTAAGTTCATTGGA-GTTTGGT-GGGCTT--GGCAGCACTGAAAG-AGTG  1041

seq1  TGACC-TCTCTGGGGACA-TCTAAGCTCCTGGAGAAGCAAGCTGAGGCAG  1098
      ||||| ||||| |||||| ||||  ||||||||| |||| |||||| |||
seq2  TGACCTTCTCT-GGGACATTCTAGCCTCCTGGAG-AGCAGGCTGAGCCAG  1089

seq1  GTGCAA  1104
      ||||||
seq2  GTGCAA  1095

seq1: chr6_115642582_115643719
seq2: B6Ng01-156A11.g_69_1198 (reverse)

seq1  TAAAGAAAAAAGAAGCC-AGTGGTTTTCAGCCACAGAATAAGCA-AGGGA  48
      ||||||||||||||||| ||||  ||||| ||||  ||||  || |||||
seq2  TAAAGAAAAAAGAAGCCTAGTG--TTTCAACCAC-CAATATCCACAGGGA  47

seq1  GTGTTAAGTTTCCAGAAGCCATCAGTTTCTAGTCTCCAGTCGAGTCAGAG  98
      ||||| ||||||| ||| || |||| ||   ||| |  ||| | ||  ||
seq2  GTGTT-AGTTTCC-GAAACCTTCAGGTTTATGTCACACGTC-AATCTCAG  94

seq1  AGAATTAAAAGGCCGGAAATTATCAGTCCTTTGGCTTTTGTCCAACTCTG  148
      |  |||||||| |||| || ||| ||||||||||  ||||||||||||| 
seq2  AAGATTAAAAGACCGG-AAGTAT-AGTCCTTTGGGCTTTGTCCAACTCT-  141

seq1  TGTTCCACCTCAGCTTGTCCCCTACGGCCAGGCAGGCCCCTGGCAGTGAG  198
      || | ||||||||||  ||||||||||||||||| |||||||||||||||
seq2  TGGTTCACCTCAGCTGTTCCCCTACGGCCAGGCA-GCCCCTGGCAGTGAG  190

seq1  GGAAGGAGAGGTCATAGATATGAATAAAGTCACAGAGGGAGCATAAATTA  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAAGGAGAGGTCATAGATATGAAT-AAGTCACAGAGGGAGCATAAATTA  239

seq1  TTAAACGTG-AAAAGATCAGCAGCATCATAGTAGGAGGAAACACACCATG  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACGTGAAAAAGATCAGCAGCATCATAGTAGGAGGAAACACACCATG  289

seq1  AGACCCTG-AGGCCACACCCCATTCCACCTCCCTTCCAAGTCAACATCAA  346
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AGACCCTGAAGGCCACACCCCATTCCACCTCCCTTCC-AGTCAACATCAA  338

seq1  TAAAACATTTGTGTTCGGTGCTGGAGATGGAACCCAGGACCTGGAGGGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTGTGTTCGGTGCTGGAGATGGAACCCAGGACCTGGAGGGCT  388

seq1  CAGTAAGTGCTTTCCTACTGGCCCCCATGTCCATCTTCTTAAAGTATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTGCTTTCCTACTGGCCCCCATGTCCATCTTCTTAAAGTATTTT  438

seq1  TCTTTGTTGCTGCTTATTTATTTATTTATTCATTTATTTTTATGTGTTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGCTGCTTATTTATTTATTTATTCATTTATTTTTATGTGTTTG  488

seq1  CCTGCATGTGTAGCACATGTGTGTAGTACCCAAGGAGGCCAGAAGAGGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGTGTAGCACATGTGTGTAGTACCCAAGGAGGCCAGAAGAGGGC  538

seq1  ATCTGATCCCCTGTAACTGCCAGGTATGTGAGAAATCAAACCCAGGTCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCCCCTGTAACTGCCAGGTATGTGAGAAATCAAACCCAGGTCCT  588

seq1  CGGCAAGAGCAGTCAGTGCTCTTAGCCACCGAGCCATCAGTCATCTCTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGAGCAGTCAGTGCTCTTAGCCACCGAGCCATCAGTCATCTCTCC  638

seq1  AGCCCCATTGTTTTCTCTTTGCCTGTTTTTACACTGGGTCTCAAGCAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATTGTTTTCTCTTTGCCTGTTTTTACACTGGGTCTCAAGCAGTT  688

seq1  CAGGCTGTCCTTGAACTCATGAGGTAGCTAAGGACGACCTTAAACTCCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTCCTTGAACTCATGAGGTAGCTAAGGACGACCTTAAACTCCTT  738

seq1  CTAATCACCCTGCTTCCATCTCCCAAGTGCTAAGGTTAATAGGCTTGCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCACCCTGCTTCCATCTCCCAAGTGCTAAGGTTAATAGGCTTGCAC  788

seq1  CACACCCAGCCAGGTGTGCACTGCTGCCTGGGAAAGGCTAAGGGTTAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAGCCAGGTGTGCACTGCTGCCTGGGAAAGGCTAAGGGTTAAAA  838

seq1  CCAGAGAGTCTGGCTGACCTTTTAAGATTCTTTGTGGTACCTGAGTGTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGTCTGGCTGACCTTTTAAGATTCTTTGTGGTACCTGAGTGTTG  888

seq1  CAACTATCTTGACTGTGCCTGCCCTCTCCTGTGGAAGGCTCAAGAAACCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCTTGACTGTGCCTGCCCTCTCCTGTGGAAGGCTCAAGAAACCA  938

seq1  GCTATAATTAAGAAAGAACCAATAGCTTGTGGTTAGCCACGTGTGACTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATTAAGAAAGAACCAATAGCTTGTGGTTAGCCACGTGTGACTGT  988

seq1  GGTTTTGAGGCCTGGATCTGTCACCTGCTGCCTGTGTGACCGAGGGCAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGAGGCCTGGATCTGTCACCTGCTGCCTGTGTGACCGAGGGCAAA  1038

seq1  GGTGTTAACCTCTTGTTTGTTTCTGTTTATATGAGACAGAGTCTCATGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAACCTCTTGTTTGTTTCTGTTTATATGAGACAGAGTCTCATGTA  1088

seq1  GCCCAGGTTGCCTTCAAATTCCCTAAATATGACCTTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTTGCCTTCAAATTCCCTAAATATGACCTTGAATTC  1130