BAC Information

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BAC

Clone NameB6Ng01-156C24
Chromosome6 (Build37)
Map Location 34,050,505 - 34,142,202
singlet/doubletdoublet
Overlap geneLrguk, Slc35b4
Upstream geneGm1401, Exoc4
Downstream geneAkr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156C24.bB6Ng01-156C24.g
ACCDH950758DH950759
length1,1601,048
definitionDH950758|Mus musculus domesticus DNA, BAC clone: B6Ng01-156C24, 5' end.DH950759|Mus musculus domesticus DNA, BAC clone: B6Ng01-156C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,141,000 - 34,142,202)(34,050,505 - 34,051,567)
sequence
gaattcactcttgcacctgcgtacaaagcttgtttactagttaggcacag
cggaggcccacgccatcttataatggcgattgctcgcggcacacacagct
ctcctcagagattactggcggcacacatgcgattgctcgcagcacgtacc
ggctttccacaactctgggcttccttactctttctctaaagctcccctcc
aaccatgtgactgacctctgttcccctcttttcaaacaatatggttgttg
ttgttttccttctcttttccatactatgcctccgttcccctccctccccc
cacctctaggcaactgtgagattgacagtttacctgctctaggcttttcc
ttttagactctaataaattgggctcaatcttccattagagtctattctta
aactctgttactaatgagactaagaatctcaaaaagggaccctcactttc
ctggtatcatttggaggctgagttgggattctccaaattttctggtgaca
cacccatttagtttgcttaagaatacagtgctattcaacatattggcatt
cattatggcaagacactggggagcctaaacatccaagagaatagaccttg
gatgtggctgaatagaagatgccacgtccacgaaccgaacactttcagat
gttaagaagagaaacgcgggacctggtgtggtggctcacatccgttatcc
cagcacacagcagacagaggtcggtaggaggcttgccagaagatttgctg
caattcaagcctagtctggttcacacagcaagttccagctaaggctacac
ggtaagatgatgtctagaaagccaaaggagctggtggcaccatcaccagg
ctaatatggaaccatcaccaggctaatatggaacagtttccaagacagat
taaggaaaaatattgtgtttaaaaatgtatctctgcctattagctatgag
agaaatgcacaaactcagacggcagagtatgtatgaagtagttagttgag
tgttgagtttcaggagggcttactatttacctgtcatgtttgatatgcta
ccaggagtgcactattggatgtgtgatagtggttcggacatggcttagaa
cccatctagctgcctgaagccagtctctcctacagccttgaatgagagat
gtaaaactca
gaattcagtgccagcgactgcattcccagtgccgtgtaaccatcactgcc
acctgttttcaaagtttttcatcatctgaaacataatctctatattcatt
aagcagtaatccccttgccgcggtcacctctgatccacttcctgttctct
gccagtttacctactggagttagcctcatcttttaatccaaccttgtttc
ttcactaaagttgtgttttagtttttatctgtgataaattcagtgatgag
aatgatgagccgagggtatcatcaggagccctaccgagagggaggctttt
cagtctgcccgtttgccccttccattctctgggggcttctagcttgactg
gttacaaaagaggaccaggctggaaggctcattgtgaacccaaagtggca
caaacccatccttcctcagtggaggggagacaacggtcagggatacattg
gctgctggagacggaccactctggggtcaccagggtgtctcccaaatgga
gcccaggtgattcttcaaggttattccaggctgatgtgttagcgctgact
gatgcacacttcagagctatgcagtcagggagaccagagccgctctaaga
aggtggaattggaggaagcagtccctctctacagcatcagcattgccagg
gcctctgcgagctgtttctgtagccagagaaatctgtggctgggggtggg
gttggagccttcatctcaccaggagcagaccctggtgtcttaggatgccc
tcgaatccatgtcttccttcttcctctcctcactcactgagttcctgctg
aactctgagcctcaagcgtattattagtaaacaggctaggctccttgcag
cattcggattatgtcttaaccattgaacagcaaaaccaatctcatttgtt
tggaaactttctttatcatcacagatccaaatggtttgagcaatatctga
tgctattcattaatttctctcattcactagatttgtcctaactctagaag
ttgcagctacttagtctccctctaggagagtacgtctacgagtgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34141000_34142202
seq2: B6Ng01-156C24.b_41_1200 (reverse)

seq1  TGAGTTCTACATCT-TCATCTGAAGGCTGCTAGGAGAAGACTGGCTTCCA  49
      |||||| ||||||| |||| | ||||||| |||||| |||||||||| ||
seq2  TGAGTTTTACATCTCTCAT-TCAAGGCTG-TAGGAG-AGACTGGCTT-CA  46

seq1  GGCAGCTAGGATTGGGGATCTTAAAGCCCATGTCCCAGAAACACACCTAC  99
      |||||||| |||  ||| |||  ||| ||||||||  ||| ||   ||| 
seq2  GGCAGCTA-GAT--GGGTTCT--AAG-CCATGTCC--GAACCA---CTA-  84

seq1  TCCAACACATCTCCAAATAGTGCCACTCCCTGGGCCAAGCATATTCAAAC  149
      ||  ||||||   | ||||||| |||| |||||    |||||| ||||| 
seq2  TC--ACACAT---CCAATAGTG-CACT-CCTGG---TAGCATA-TCAAA-  122

seq1  CATGACAAGGTTAAAATTGTAAGCCCTTCCCTTGAAACTCAACAACTCAA  199
      |||||| ||||  |||| |||||||||   | ||||||||||| ||||||
seq2  CATGAC-AGGT--AAATAGTAAGCCCT---CCTGAAACTCAAC-ACTCAA  165

seq1  CTAACTACCTTCCTTACATACTTCTGCCGTTCCTGAGTTTTGTGCATTTC  249
      ||||||||  | | ||||||| ||||||||  ||||| ||||||||||||
seq2  CTAACTAC--TTCATACATAC-TCTGCCGT--CTGAG-TTTGTGCATTTC  209

seq1  TCTCATTAGCTAATAGGCAGAGATACATTTTTTAAACACAAATATTTTTC  299
      ||||| ||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TCTCA-TAGCTAATAGGCAGAGATACA-TTTTTAAACAC-AATATTTTTC  256

seq1  CTTAATCTGTCTTGGAAACTGTTCCATATTAGCCTGGTGATGGTTCCATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTGTCTTGGAAACTGTTCCATATTAGCCTGGTGATGGTTCCATA  306

seq1  TTAGCCTGGTGATGGTGCCACCAGCTCCTTTGGCTTTCTAGACATCATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTGGTGATGGTGCCACCAGCTCCTTTGGCTTTCTAGACATCATCT  356

seq1  TACCGTGTAGCCTTAGCTGGAACTTGCTGTGTGAACCAGACTAGGCTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTGTAGCCTTAGCTGGAACTTGCTGTGTGAACCAGACTAGGCTTGA  406

seq1  ATTGCAGCAAATCTTCTGGCAAGCCTCCTACCGACCTCTGTCTGCTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGCAAATCTTCTGGCAAGCCTCCTACCGACCTCTGTCTGCTGTGT  456

seq1  GCTGGGATAACGGATGTGAGCCACCACACCAGGTCCCGCGTTTCTCTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATAACGGATGTGAGCCACCACACCAGGTCCCGCGTTTCTCTTCT  506

seq1  TAACATCTGAAAGTGTTCGGTTCGTGGACGTGGCATCTTCTATTCAGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTGAAAGTGTTCGGTTCGTGGACGTGGCATCTTCTATTCAGCCA  556

seq1  CATCCAAGGTCTATTCTCTTGGATGTTTAGGCTCCCCAGTGTCTTGCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGGTCTATTCTCTTGGATGTTTAGGCTCCCCAGTGTCTTGCCAT  606

seq1  AATGAATGCCAATATGTTGAATAGCACTGTATTCTTAAGCAAACTAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGCCAATATGTTGAATAGCACTGTATTCTTAAGCAAACTAAATG  656

seq1  GGTGTGTCACCAGAAAATTTGGAGAATCCCAACTCAGCCTCCAAATGATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCACCAGAAAATTTGGAGAATCCCAACTCAGCCTCCAAATGATA  706

seq1  CCAGGAAAGTGAGGGTCCCTTTTTGAGATTCTTAGTCTCATTAGTAACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGTGAGGGTCCCTTTTTGAGATTCTTAGTCTCATTAGTAACAG  756

seq1  AGTTTAAGAATAGACTCTAATGGAAGATTGAGCCCAATTTATTAGAGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGAATAGACTCTAATGGAAGATTGAGCCCAATTTATTAGAGTCT  806

seq1  AAAAGGAAAAGCCTAGAGCAGGTAAACTGTCAATCTCACAGTTGCCTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAGCCTAGAGCAGGTAAACTGTCAATCTCACAGTTGCCTAGA  856

seq1  GGTGGGGGGAGGGAGGGGAACGGAGGCATAGTATGGAAAAGAGAAGGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGGAGGGAGGGGAACGGAGGCATAGTATGGAAAAGAGAAGGAAA  906

seq1  ACAACAACAACCATATTGTTTGAAAAGAGGGGAACAGAGGTCAGTCACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACCATATTGTTTGAAAAGAGGGGAACAGAGGTCAGTCACAT  956

seq1  GGTTGGAGGGGAGCTTTAGAGAAAGAGTAAGGAAGCCCAGAGTTGTGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGGGGAGCTTTAGAGAAAGAGTAAGGAAGCCCAGAGTTGTGGAA  1006

seq1  AGCCGGTACGTGCTGCGAGCAATCGCATGTGTGCCGCCAGTAATCTCTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGTACGTGCTGCGAGCAATCGCATGTGTGCCGCCAGTAATCTCTGA  1056

seq1  GGAGAGCTGTGTGTGCCGCGAGCAATCGCCATTATAAGATGGCGTGGGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTGTGTGTGCCGCGAGCAATCGCCATTATAAGATGGCGTGGGCC  1106

seq1  TCCGCTGTGCCTAACTAGTAAACAAGCTTTGTACGCAGGTGCAAGAGTGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTGTGCCTAACTAGTAAACAAGCTTTGTACGCAGGTGCAAGAGTGA  1156

seq1  ATTC  1203
      ||||
seq2  ATTC  1160

seq1: chr6_34050505_34051567
seq2: B6Ng01-156C24.g_64_1111

seq1  GAATTCAGTGCCAGCGACTGCATTCCCAGTGCCGTGTAACCATCACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCAGCGACTGCATTCCCAGTGCCGTGTAACCATCACTGCC  50

seq1  ACCTGTTTTCAAAGTTTTTCATCATCTGAAACATAATCTCTATATTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTTCAAAGTTTTTCATCATCTGAAACATAATCTCTATATTCATT  100

seq1  AAGCAGTAATCCCCTTGCCGCGGTCACCTCTGATCCACTTCCTGTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAATCCCCTTGCCGCGGTCACCTCTGATCCACTTCCTGTTCTCT  150

seq1  GCCAGTTTACCTACTGGAGTTAGCCTCATCTTTTAATCCAACCTTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTACCTACTGGAGTTAGCCTCATCTTTTAATCCAACCTTGTTTC  200

seq1  TTCACTAAAGTTGTGTTTTAGTTTTTATCTGTGATAAATTCAGTGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAAAGTTGTGTTTTAGTTTTTATCTGTGATAAATTCAGTGATGAG  250

seq1  AATGATGAGCCGAGGGTATCATCAGGAGCCCTACCGAGAGGGAGGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAGCCGAGGGTATCATCAGGAGCCCTACCGAGAGGGAGGCTTTT  300

seq1  CAGTCTGCCCGTTTGCCCCTTCCATTCTCTGGGGGCTTCTAGCTTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCCCGTTTGCCCCTTCCATTCTCTGGGGGCTTCTAGCTTGACTG  350

seq1  GTTACAAAAGAGGACCAGGCTGGAAGGCTCATTGTGAACCCAAAGTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAAAGAGGACCAGGCTGGAAGGCTCATTGTGAACCCAAAGTGGCA  400

seq1  CAAACCCATCCTTCCTCAGTGGAGGGGAGACAACGGTCAGGGATACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCATCCTTCCTCAGTGGAGGGGAGACAACGGTCAGGGATACATTG  450

seq1  GCTGCTGGAGACGGACCACTCTGGGGTCACCAGGGTGTCTCCCAAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGAGACGGACCACTCTGGGGTCACCAGGGTGTCTCCCAAATGGA  500

seq1  GCCCAGGTGATTCTTCAAGGTTATTCCAGGCTGATGTGTTAGCGCTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTGATTCTTCAAGGTTATTCCAGGCTGATGTGTTAGCGCTGACT  550

seq1  GATGCACACTTCAGAGCTATGCAGTCAGGGAGACCAGAGCCGCTCTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACACTTCAGAGCTATGCAGTCAGGGAGACCAGAGCCGCTCTAAGA  600

seq1  AGGTGGAATTGGAGGAAGCAGTCCCTCTCTACAGCATCAGCATTGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAATTGGAGGAAGCAGTCCCTCTCTACAGCATCAGCATTGCCAGG  650

seq1  GCCTCTGCGAGCTGTTTCTGTAGCCAGAGAAATCTGTGGCTGGGGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCGAGCTGTTTCTGTAGCCAGAGAAATCTGTGGCTGGGGGTGGG  700

seq1  GTTGGAGCCTTCATCTCACCAGGAGCAGACCCTGGTGTCTTAGGATGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGCCTTCATCTCACCAGGAGCAGACCCTGGTGTCTTAGGATGCCC  750

seq1  TCGAATCCATGTCTTCCTTCTTCCTCTCCTCACTCACTGAGTTCCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCCATGTCTTCCTTCTTCCTCTCCTCACTCACTGAGTTCCTGCTG  800

seq1  AACTCTGAGCCTCAAGCGTATTATTAGTAAACAGGCTAGGCTCCTTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGCCTCAAGCGTATTATTAGTAAACAGGCTAGGCTCCTTGCAG  850

seq1  CATTCGGATTATGTCTTAACCATTGAACAGCAAAACCAATCTCATTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGGATTATGTCTTAACCATTGAACAGCAAAACCAATCTCATTTGTT  900

seq1  TGGAAACTTTCTTTATCATCCACAGATCCAAATGGTTTTGAGCAAATATC  950
      ||||||||||||||||||| ||||||||||||||| ||||||| ||||||
seq2  TGGAAACTTTCTTTATCAT-CACAGATCCAAATGG-TTTGAGC-AATATC  947

seq1  TGGATGCTTATTCATTTAAATTTCTTCTCAATTCACTAGATTTGTCCTAA  1000
      | ||||| ||||||||  |||||| |||| ||||||||||||||||||||
seq2  T-GATGC-TATTCATT--AATTTC-TCTC-ATTCACTAGATTTGTCCTAA  991

seq1  CTTCTAGAAAGTTGCAGCTACTTAGTCTCCCCCAAGGAGAAGGGGAAGGT  1050
      | ||||| ||||||||||||||||||||||| | ||||||    | | ||
seq2  C-TCTAG-AAGTTGCAGCTACTTAGTCTCCCTCTAGGAGA----GTACGT  1035

seq1  CTACGAGTGATTT  1063
      |||||||||||||
seq2  CTACGAGTGATTT  1048