BAC Information

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BAC

Clone NameB6Ng01-156M24
Chromosome6 (Build37)
Map Location 4,490,624 - 4,618,631
singlet/doubletdoublet
Overlap geneCol1a2, Casd1
Upstream geneCcdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
Downstream geneSgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156M24.bB6Ng01-156M24.g
ACCDH951218DH951219
length1,1711,143
definitionDH951218|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M24, 5' end.DH951219|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,490,624 - 4,491,825)(4,617,489 - 4,618,631)
sequence
gaattccgtgtggaggttggccccgtctgtttcaaataagtgaactcaac
ctaaattaaaaaccaaaaacccctgaaaaaactttctctttgccgtttcc
tcctttaaaaaaaaaaacaaaaaacaaaaactgaaagctgaatccttcca
tgtcttctatgcatctacatcttaaactgtgggcaaaagagaaggattgg
tcagagcagtgtgcaatatgatccaactaagtctcctcccttggcccctc
cccaaaatgtttgcagtgttatttttgtgggtttttttttaacaccctga
cacctgttgtggacattgtcaacctttgtaagaaaacccaaataaaaatt
gaaaaataaaataaaaagaaacccatgaacattcgcaccacttgtggctt
ctgactatcttccacagagggaagtttaaaacccaaacttccaaaggttt
gaactacctcaagacactttgcagtgagtgtagaccatcccaatgagagt
tgaccaaggctgacacgaactgaggtacttgttttgttttgcttgcaaca
caaaggtgctaattagtagtatttcagatacttgaagaatatgaacggtg
ctggaagaattacagaagaaacaatcctccacattgatgtgcattgtgtg
tgatttttaaatttgacttagcagtcctctttctcatcttatccccaact
acaggaatgcaggccacttgccccaggttctctcttcattagattcagca
ttcattctttaacagcctcattttccttcttgcccatggttccaaagaag
tcttgtttcttggacaagcagaaaaattgaattgtacctattttgtatat
gtgagatgtttaaataaattgtgaaaaataaaataaagcatttttggttt
tccaaaagaaaatattgagtaaaattccttgctttgatgctcattgccat
atgaatctgcatctctaccagccattagaacaagtaaacctcagtggaag
aattatacagtatatattatatattatattatatatatatataatatgta
gaaagatctcagaacagagacctcaggagaactcagcttcagttctgcat
gttctggctaagtgaacctcagctctgtgccttggatcctctttcaactt
gtaacctgaaggaattctatt
gaattcagtccatcataaatccctggttttgatgactaaacagataatgt
gttaacttcttaaaaacaacactgttagaggctggcaacatgactcagca
agtgaaggatcctgctcttgggcctggagggctgtttggtttctggcatc
acgaagagcaggaggagagagccatttactgagaggcttcctctggctcc
cctcgggtacactgtggcacacatgaatataccaagttagttttaaaaaa
agagcaaaaataacattgtgaccaaaatgtcacagcggggtgaaaggaca
agaagctgatgtcagggcagaggagcagctcgtttttgtgctgaggatgt
tgaaggaatagacatgtttgtcattgaaaaaaatagtttgaacatagaac
tgctggaattttctgatgaattatacatcatgtgaattagggaatggagg
actcaagagaacttccaaaatcatggtcttagtgtattttttggttcttt
ttctgtgttggtgaagacatcaaggatacatgcaagacttttttttaatt
ttgagcatttttatttcttatcagaaatatgaaatctttctagggacaag
aaaagtaaatgtgccatcttgggagttttcaatgccacctgtaaaaataa
ttttttttgtcagtcttctgaaactaacctcattgcgctatagcagatgg
ctaaatattagctagccatcatgttgcctaggtcaaaggttctagcatgg
atatagataggaagtccaggggtcttcttcaggtgaatgtataacacagt
ctgtctcaagcagacctccggagcaataaacacatggaaaaataaacacg
agttataaccccgctgacctctggtaatctctcgttgtgatgttcgctga
cattatgccttttttttttttttttggtggggggttcagatgtctgaatg
tgagaccgttatgggccattaagaagagaaaagtcttcacttattgtggc
atgcagcttcttactgagacataacaaccgcctactgtgcttcatcttga
tagaagagaggcatggatagactctttagagcttccggagtgagaaagga
attatcattttccactctttataatcgatgactccaggcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4490624_4491825
seq2: B6Ng01-156M24.b_49_1219

seq1  GAATTCCGTGTGGAGGTTGGCCCCGTCTGTTTCAAATAAGTGAACTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGTGGAGGTTGGCCCCGTCTGTTTCAAATAAGTGAACTCAAC  50

seq1  CTAAATTAAAAACCAAAAACCCCTGAAAAAACTTTCTCTTTGCCGTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTAAAAACCAAAAACCCCTGAAAAAACTTTCTCTTTGCCGTTTCC  100

seq1  TCCTTTAAAAAAAAAAACAAAAAACAAAAACTGAAAGCTGAATCCTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAAAAAAAAAACAAAAAACAAAAACTGAAAGCTGAATCCTTCCA  150

seq1  TGTCTTCTATGCATCTACATCTTAAACTGTGGGCAAAAGAGAAGGATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTATGCATCTACATCTTAAACTGTGGGCAAAAGAGAAGGATTGG  200

seq1  TCAGAGCAGTGTGCAATATGATCCAACTAAGTCTCCTCCCTTGGCCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAGTGTGCAATATGATCCAACTAAGTCTCCTCCCTTGGCCCCTC  250

seq1  CCCAAAATGTTTGCAGTGTTATTTTTGTGGGTTTTTTTTTAACACCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATGTTTGCAGTGTTATTTTTGTGGGTTTTTTTTTAACACCCTGA  300

seq1  CACCTGTTGTGGACATTGTCAACCTTTGTAAGAAAACCCAAATAAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTGTGGACATTGTCAACCTTTGTAAGAAAACCCAAATAAAAATT  350

seq1  GAAAAATAAAATAAAAAGAAACCCATGAACATTCGCACCACTTGTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAAAATAAAAAGAAACCCATGAACATTCGCACCACTTGTGGCTT  400

seq1  CTGACTATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAAGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAAGGTTT  450

seq1  GAACTACCTCAAGACACTTTGCAGTGAGTGTAGACCATCCCAATGAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACCTCAAGACACTTTGCAGTGAGTGTAGACCATCCCAATGAGAGT  500

seq1  TGACCAAGGCTGACACGAACTGAGGTACTTGTTTTGTTTTGCTTGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGGCTGACACGAACTGAGGTACTTGTTTTGTTTTGCTTGCAACA  550

seq1  CAAAGGTGCTAATTAGTAGTATTTCAGATACTTGAAGAATATGAACGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGCTAATTAGTAGTATTTCAGATACTTGAAGAATATGAACGGTG  600

seq1  CTGGAAGAATTACAGAAGAAACAATCCTCCACATTGATGTGCATTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAATTACAGAAGAAACAATCCTCCACATTGATGTGCATTGTGTG  650

seq1  TGATTTTTAAATTTGACTTAGCAGTCCTCTTTCTCATCTTATCCCCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAAATTTGACTTAGCAGTCCTCTTTCTCATCTTATCCCCAACT  700

seq1  ACAGGAATGCAGGCCACTTGCCCCAGGTTCTCTCTTCATTAGATTCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATGCAGGCCACTTGCCCCAGGTTCTCTCTTCATTAGATTCAGCA  750

seq1  TTCATTCTTTAACAGCCTCATTTTCCTTCTTGCCCATGGTTCCAAAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTTAACAGCCTCATTTTCCTTCTTGCCCATGGTTCCAAAGAAG  800

seq1  TCTTGTTTCTTGGACAAGCAGAAAAATTGAATTGTACCTATTTTGTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCTTGGACAAGCAGAAAAATTGAATTGTACCTATTTTGTATAT  850

seq1  GTGAGATGTTTAAATAAATTGTGAAAAATAAAATAAAGCATTTTTGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGTTTAAATAAATTGTGAAAAATAAAATAAAGCATTTTTGGTTT  900

seq1  TCCAAAAGAAAATATTGAGTAAAATTCCTTGCTTTGATGCTCATTGCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGAAAATATTGAGTAAAATTCCTTGCTTTGATGCTCATTGCCAT  950

seq1  ATGAATCTGCATCTCTACCAGCCATTAGAACAAGTAAACCTCAGTGGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGAATCTGCATCTCTACCAGCCATTAGAACAAGTAAACCTCAGTGGAA-  999

seq1  GAAATTATACAGTAATAATAATTAATAATAATAATAATAATAATAATAAT  1050
        ||||||||||||   || ||  || ||| ||   |||   |||||   
seq2  -GAATTATACAGTATATATTATATATTATATTATATATATATATAAT---  1045

seq1  AATAATAATAATGTAGAAAGATCTCAGAACAAGGAAGGACTCAGGAAGAA  1100
                |||||||||||||||||||||    ||  |||||||   |
seq2  ----------ATGTAGAAAGATCTCAGAACA---GAGACCTCAGGA--GA  1080

seq1  ACTCAGCTCCAGTTTCTGCCATGTTCCTTGGAGCTAAGTGACCTTCAGCC  1150
      |||||||| ||| ||||| |||||||  ||  ||||||||| | |||| |
seq2  ACTCAGCTTCAG-TTCTG-CATGTTC--TG--GCTAAGTGAACCTCAG-C  1123

seq1  TCTGTGCCTGGGTTTCTGCTTCCAACCTGGTAACATGGAGAGGAATTCTA  1200
      ||||||||| || | || ||| ||| || ||||| ||   ||||||||||
seq2  TCTGTGCCTTGGATCCT-CTTTCAA-CTTGTAACCTG--AAGGAATTCTA  1169

seq1  TT  1202
      ||
seq2  TT  1171

seq1: chr6_4617489_4618631
seq2: B6Ng01-156M24.g_67_1209 (reverse)

seq1  ACAAGCTTGTGAGTCATTCTGATATAAAGAGTGG-ACATGATTGATTTTC  49
      |||||| || |||||| ||   |||||||||||| | |||||  | || |
seq2  ACAAGCCTG-GAGTCA-TCGATTATAAAGAGTGGAAAATGAT--AATTCC  46

seq1  TTTCTCACTCGGAAAGCTCTTAAGAGTCTAATCCATGGCTCTCATCTATC  99
      |||||||||| | ||||||| |||||||| ||||||| ||||| ||||||
seq2  TTTCTCACTCCGGAAGCTCTAAAGAGTCT-ATCCATGCCTCTCTTCTATC  95

seq1  AAGATGAAGCACCAGTAGGC-GTTGTTATGTCTCAGT-AGGAGCTGCATG  147
      ||||||||||| |||||||| |||||||||||||||| || |||||||||
seq2  AAGATGAAGCA-CAGTAGGCGGTTGTTATGTCTCAGTAAGAAGCTGCATG  144

seq1  -CACAATAAGTGGAGACTTCTCTC-TCTTAATGG-CCATAACGGTCTCAA  194
       ||||||||||| |||||| |||| ||||||||| ||||||||||||| |
seq2  CCACAATAAGTGAAGACTTTTCTCTTCTTAATGGCCCATAACGGTCTC-A  193

seq1  CATTCAGACATCTGAA-CACACACC-AAAAAAAAAAAAAAAGGCATAATT  242
      |||||||||||||||| | | |||| |||||||||||||||||||||| |
seq2  CATTCAGACATCTGAACCCCCCACCAAAAAAAAAAAAAAAAGGCATAA-T  242

seq1  GTCAGCGAACATCACAACGAGAGATTACCAGAGGTCAGCGGGGTTATAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCGAACATCACAACGAGAGATTACCAGAGGTCAGCGGGGTTATAAC  292

seq1  TCGTGTTTATTTTTCCATGTGTTTATTGCTCCGGAGGTCTGCTTGAGACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTTTATTTTTCCATGTGTTTATTGCTCCGGAGGTCTGCTTGAGACA  342

seq1  GACTGTGTTATACATTCACCTGAAGAAGACCCCTGGACTTCCTATCTATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTTATACATTCACCTGAAGAAGACCCCTGGACTTCCTATCTATA  392

seq1  TCCATGCTAGAACCTTTGACCTAGGCAACATGATGGCTAGCTAATATTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTAGAACCTTTGACCTAGGCAACATGATGGCTAGCTAATATTTA  442

seq1  GCCATCTGCTATAGCGCAATGAGGTTAGTTTCAGAAGACTGACAAAAAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGCTATAGCGCAATGAGGTTAGTTTCAGAAGACTGACAAAAAAA  492

seq1  ATTATTTTTACAGGTGGCATTGAAAACTCCCAAGATGGCACATTTACTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTACAGGTGGCATTGAAAACTCCCAAGATGGCACATTTACTTT  542

seq1  TCTTGTCCCTAGAAAGATTTCATATTTCTGATAAGAAATAAAAATGCTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCCTAGAAAGATTTCATATTTCTGATAAGAAATAAAAATGCTCA  592

seq1  AAATTAAAAAAAAGTCTTGCATGTATCCTTGATGTCTTCACCAACACAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAAAAGTCTTGCATGTATCCTTGATGTCTTCACCAACACAGA  642

seq1  AAAAGAACCAAAAAATACACTAAGACCATGATTTTGGAAGTTCTCTTGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCAAAAAATACACTAAGACCATGATTTTGGAAGTTCTCTTGAG  692

seq1  TCCTCCATTCCCTAATTCACATGATGTATAATTCATCAGAAAATTCCAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTCCCTAATTCACATGATGTATAATTCATCAGAAAATTCCAGC  742

seq1  AGTTCTATGTTCAAACTATTTTTTTCAATGACAAACATGTCTATTCCTTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATGTTCAAACTATTTTTTTCAATGACAAACATGTCTATTCCTTC  792

seq1  AACATCCTCAGCACAAAAACGAGCTGCTCCTCTGCCCTGACATCAGCTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTCAGCACAAAAACGAGCTGCTCCTCTGCCCTGACATCAGCTTC  842

seq1  TTGTCCTTTCACCCCGCTGTGACATTTTGGTCACAATGTTATTTTTGCTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTTCACCCCGCTGTGACATTTTGGTCACAATGTTATTTTTGCTC  892

seq1  TTTTTTTAAAACTAACTTGGTATATTCATGTGTGCCACAGTGTACCCGAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAACTAACTTGGTATATTCATGTGTGCCACAGTGTACCCGAG  942

seq1  GGGAGCCAGAGGAAGCCTCTCAGTAAATGGCTCTCTCCTCCTGCTCTTCG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAGAGGAAGCCTCTCAGTAAATGGCTCTCTCCTCCTGCTCTTCG  992

seq1  TGATGCCAGAAACCAAACAGCCCTCCAGGCCCAAGAGCAGGATCCTTCAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCAGAAACCAAACAGCCCTCCAGGCCCAAGAGCAGGATCCTTCAC  1042

seq1  TTGCTGAGTCATGTTGCCAGCCTCTAACAGTGTTGTTTTTAAGAAGTTAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGTCATGTTGCCAGCCTCTAACAGTGTTGTTTTTAAGAAGTTAA  1092

seq1  CACATTATCTGTTTAGTCATCAAAACCAGGGATTTATGATGGACTGAATT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATCTGTTTAGTCATCAAAACCAGGGATTTATGATGGACTGAATT  1142

seq1  C  1143
      |
seq2  C  1143