BAC Information

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BAC

Clone NameB6Ng01-157M09
Chromosome6 (Build37)
Map Location 53,100,956 - 53,259,357
singlet/doubletdoublet
Overlap geneLOC666516, D430007I03
Upstream geneHoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157M09.bB6Ng01-157M09.g
ACCDH951917DH951918
length1,124826
definitionDH951917|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M09, 5' end.DH951918|Mus musculus domesticus DNA, BAC clone: B6Ng01-157M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,258,201 - 53,259,357)(53,100,956 - 53,101,782)
sequence
gaattcacttaacatcagataaaataaatactgccaacaagctgtccaga
taataataataataataataaagtttccccaagaaattgatctgggtgct
aaattttggcatttggttaaagtcctataaaatgaataacttaatggcct
caacactataattagtaattatattttctgtttctgagaatgattgatga
gtgcatacctttgaggcatcattctctccattgtaaaataaggcagtaga
aaagaggctgagatcagcctcaggggcagaatggggggcacctggaaccc
ctgcaccagcacctcccactcccacttgcagctggcaggggaaggtcatg
cctcacatggcacaagcctgaagctgacctttctgcctatcaactgtttt
tccccactggtgctagtgacccccttccgtttttttccataggctattct
tttcagcctgcggtttctctggcaggctgccacaagaaaagtggagttga
gtgaagtgagataagctgaggtctggatctctcgaaacttttattgcagt
agaaggatagaaaaatagaagggacatgaatggtgctacagatgtcgcaa
gctgaagaggggttatttttgaatctcgataaagatgcgcatgtaaagat
ttgcagataaaacacaaggccaggacttaagaaccacaaacatgttctgc
aatacctctctaatgcaaaagcacggggctggggctggagagggagtctt
gttggcaggcacttggcttgcaagcatgaggacctgagttccacctccag
aactcaaattttaaaggcaaggtacggtagggagcatttgtagtgctagg
aaggtagaaaaagacacatccctggggcttggagccagtcatcttagcta
tgtgatgagctccgggccatgaagcacactgcatctgaggacattatgaa
gtgactctggctcacacgaggttcacatacatgtaccaacacaccataca
caacaccacacaacaacaccacacactgtcaagaacacacatgtgacaat
ccacaacatgccactcaacaaatgctagactgagtttgtttttagacttt
gaagatactgtgtaaggttctaat
gaattcaggcattcaaatgtcattggagagaagaatttagacacatactt
ttagtgattatatatttattatatgttaaaatgtgtcatatattttatgt
tttatgtaatgtacagaactatacaaaatgttaattaatttatatttctc
tatatattttatttaatttttatgacacagggatggaacccaggaccttg
cctgcactaggcaggtgctataccactgagccaccctgcctcttcttaaa
agtatttagatacattttatatagatgattatttttgtattttgtacaat
tataagaataaaagtaaaccaaatgtttctcgagtaaataagtggaaatt
ggccaggatttggtttgaatatcagactttcattcctgtggaagaaaaat
aataagataatgttcagagataacactgtccccagatgttgcttggctct
gtcagacaggaaatcccatctgcggttaatttccaggccaccccatcatc
ttggtgagcaaattatttctttataagagaaactttcttgtttcattttc
accattgcttttgagtaagattagaaagcagagagacacagttgaaaatc
tcctctgagagtttcaatgctgtacttatagggatccaagtaacacaggg
acaaaatactgagtaggaagggggatttgggaccaaatttatgcaatatg
caaatgagttttattacttgaaaagtttcagaggcaaaattttaccttct
tcttcctctttctcttcctcttcttccccttcttctcctcctccatctcc
tcctcctccttctcctcctcatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53258201_53259357
seq2: B6Ng01-157M09.b_47_1170 (reverse)

seq1  ATTAGAACATTATACACAGCTAATCTTCAAAGTCTAAAAACAAAAATGCA  50
      |||||||| |  |||||||   |||||||||||||||||||  |||  ||
seq2  ATTAGAACCT--TACACAG--TATCTTCAAAGTCTAAAAAC--AAACTCA  44

seq1  GTCCTATGCATTTTGTTTGAGTGTGCATGTTTGTGTGTATGTCCACATGT  100
      || ||| ||||||   ||||||| ||||||   |||| ||   |||||||
seq2  GT-CTA-GCATTT--GTTGAGTG-GCATGT---TGTGGATTGTCACATGT  86

seq1  GTGTTCCTAGACAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||||| || |||| ||||||| |||| ||| |||||| |||| ||||| |
seq2  GTGTT-CTTGACA-GTGTGTG-GTGT-TGT-TGTGTG-GTGT-TGTGTAT  129

seq1  GTGTGTGTGTGGTACATGTATGTGAACCTCTGTGTGGAGGCCAGAGGTCA  200
      | |||||| ||||||||||||||||||||| |||||   |||||| ||||
seq2  G-GTGTGT-TGGTACATGTATGTGAACCTC-GTGTG--AGCCAGA-GTCA  173

seq1  ACCTTCATAATGTTCCTCAGATGCAGTGTGCCTTCATTGGCCCGGAGCTC  250
        |||||||||| ||||||||||||||||| ||||| |||||||||||||
seq2  --CTTCATAATG-TCCTCAGATGCAGTGTG-CTTCA-TGGCCCGGAGCTC  218

seq1  ATCACATAGGCTAAGATGACTGGCTCCAAGCCCCAGGGATGTGTCTTTTT  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATA-GCTAAGATGACTGGCTCCAAGCCCCAGGGATGTGTCTTTTT  267

seq1  CTACCTTCCTAGCACTACAAATGCTCCCTACCGTACCTTGCCTTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCCTAGCACTACAAATGCTCCCTACCGTACCTTGCCTTTAAAAT  317

seq1  TTGAGTTCTGGAGGTGGAACTCAGGTCCTCATGCTTGCAAGCCAAGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTGGAGGTGGAACTCAGGTCCTCATGCTTGCAAGCCAAGTGCC  367

seq1  TGCCAACAAGACTCCCTCTCCAGCCCCAGCCCCGTGCTTTTGCATTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAAGACTCCCTCTCCAGCCCCAGCCCCGTGCTTTTGCATTAGAG  417

seq1  AGGTATTGCAGAACATGTTTGTGGTTCTTAAGTCCTGGCCTTGTGTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTGCAGAACATGTTTGTGGTTCTTAAGTCCTGGCCTTGTGTTTTA  467

seq1  TCTGCAAATCTTTACATGCGCATCTTTATCGAGATTCAAAAATAACCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAATCTTTACATGCGCATCTTTATCGAGATTCAAAAATAACCCCT  517

seq1  CTTCAGCTTGCGACATCTGTAGCACCATTCATGTCCCTTCTATTTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTGCGACATCTGTAGCACCATTCATGTCCCTTCTATTTTTCTA  567

seq1  TCCTTCTACTGCAATAAAAGTTTCGAGAGATCCAGACCTCAGCTTATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTACTGCAATAAAAGTTTCGAGAGATCCAGACCTCAGCTTATCTC  617

seq1  ACTTCACTCAACTCCACTTTTCTTGTGGCAGCCTGCCAGAGAAACCGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTCAACTCCACTTTTCTTGTGGCAGCCTGCCAGAGAAACCGCAG  667

seq1  GCTGAAAAGAATAGCCTATGGAAAAAAACGGAAGGGGGTCACTAGCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAAGAATAGCCTATGGAAAAAAACGGAAGGGGGTCACTAGCACCA  717

seq1  GTGGGGAAAAACAGTTGATAGGCAGAAAGGTCAGCTTCAGGCTTGTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAAAACAGTTGATAGGCAGAAAGGTCAGCTTCAGGCTTGTGCCA  767

seq1  TGTGAGGCATGACCTTCCCCTGCCAGCTGCAAGTGGGAGTGGGAGGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCATGACCTTCCCCTGCCAGCTGCAAGTGGGAGTGGGAGGTGCT  817

seq1  GGTGCAGGGGTTCCAGGTGCCCCCCATTCTGCCCCTGAGGCTGATCTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGGGTTCCAGGTGCCCCCCATTCTGCCCCTGAGGCTGATCTCAG  867

seq1  CCTCTTTTCTACTGCCTTATTTTACAATGGAGAGAATGATGCCTCAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTCTACTGCCTTATTTTACAATGGAGAGAATGATGCCTCAAAGG  917

seq1  TATGCACTCATCAATCATTCTCAGAAACAGAAAATATAATTACTAATTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTCATCAATCATTCTCAGAAACAGAAAATATAATTACTAATTAT  967

seq1  AGTGTTGAGGCCATTAAGTTATTCATTTTATAGGACTTTAACCAAATGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGAGGCCATTAAGTTATTCATTTTATAGGACTTTAACCAAATGCC  1017

seq1  AAAATTTAGCACCCAGATCAATTTCTTGGGGAAACTTTATTATTATTATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAGCACCCAGATCAATTTCTTGGGGAAACTTTATTATTATTATT  1067

seq1  ATTATTATCTGGACAGCTTGTTGGCAGTATTTATTTTATCTGATGTTAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCTGGACAGCTTGTTGGCAGTATTTATTTTATCTGATGTTAAG  1117

seq1  TGAATTC  1157
      |||||||
seq2  TGAATTC  1124

seq1: chr6_53100956_53101782
seq2: B6Ng01-157M09.g_67_892

seq1  GAATTCAGGCATTCAAATGTCATTGGAGAGAAGAATTTAGACACATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCATTCAAATGTCATTGGAGAGAAGAATTTAGACACATACTT  50

seq1  TTAGTGATTATATATTTATTATATGTTAAAATGTGTCATATATTTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATTATATATTTATTATATGTTAAAATGTGTCATATATTTTATGT  100

seq1  TTTATGTAATGTACAGAACTATACAAAATGTTAATTAATTTATATTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAATGTACAGAACTATACAAAATGTTAATTAATTTATATTTCTC  150

seq1  TATATATTTTATTTAATTTTTATGACACAGGGATGGAACCCAGGACCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTATTTAATTTTTATGACACAGGGATGGAACCCAGGACCTTG  200

seq1  CCTGCACTAGGCAGGTGCTATACCACTGAGCCACCCTGCCTCTTCTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTAGGCAGGTGCTATACCACTGAGCCACCCTGCCTCTTCTTAAA  250

seq1  AGTATTTAGATACATTTTATATAGATGATTATTTTTGTATTTTGTACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAGATACATTTTATATAGATGATTATTTTTGTATTTTGTACAAT  300

seq1  TATAAGAATAAAAGTAAACCAAATGTTTCTCGAGTAAATAAGTGGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAATAAAAGTAAACCAAATGTTTCTCGAGTAAATAAGTGGAAATT  350

seq1  GGCCAGGATTTGGTTTGAATATCAGACTTTCATTCCTGTGGAAGAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGATTTGGTTTGAATATCAGACTTTCATTCCTGTGGAAGAAAAAT  400

seq1  AATAAGATAATGTTCAGAGATAACACTGTCCCCAGATGTTGCTTGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATAATGTTCAGAGATAACACTGTCCCCAGATGTTGCTTGGCTCT  450

seq1  GTCAGACAGGAAATCCCATCTGCGGTTAATTTCCAGGCCACCCCATCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACAGGAAATCCCATCTGCGGTTAATTTCCAGGCCACCCCATCATC  500

seq1  TTGGTGAGCAAATTATTTCTTTATAAGAGAAACTTTCTTGTTTCATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGCAAATTATTTCTTTATAAGAGAAACTTTCTTGTTTCATTTTC  550

seq1  ACCATTGCTTTTGAGTAAGATTAGAAAGCAGAGAGACACAGTTGAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCTTTTGAGTAAGATTAGAAAGCAGAGAGACACAGTTGAAAATC  600

seq1  TCCTCTGAGAGTTTCAATGCTGTACTTATAGGGATCCAAGTAACACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAGAGTTTCAATGCTGTACTTATAGGGATCCAAGTAACACAGGG  650

seq1  ACAAAATACTGAGTAGGAAGGGGGATTTGGGACCAAATTTATGCAATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATACTGAGTAGGAAGGGGGATTTGGGACCAAATTTATGCAATATG  700

seq1  CAAATGAGTTTTATTACTTGAAAAGTTTCAGAGGCAAAATTTTACCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTTTTATTACTTGAAAAGTTTCAGAGGCAAAATTTTACCTTCT  750

seq1  TCTTCCTCTTTCTCTTCCTCTTCTTCCCCTTCTTCTCCTCCTCCATCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTTCTCTTCCTCTTCTTCCCCTTCTTCTCCTCCTCCATCTCC  800

seq1  TCCTCCTCCTTCTCCTCCTCCATTTCC  827
      ||||||||||||||||||| |||||||
seq2  TCCTCCTCCTTCTCCTCCT-CATTTCC  826