BAC Information

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BAC

Clone NameB6Ng01-158K13
Chromosome6 (Build37)
Map Location 29,848,814 - 29,849,955
singlet/doubletsinglet
Overlap gene4631427C17Rik
Upstream geneLOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Downstream geneD330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158K13.bB6Ng01-158K13.g
ACCDH952549DH952550
length1,2551,137
definitionDH952549|Mus musculus domesticus DNA, BAC clone: B6Ng01-158K13, 5' end.DH952550|Mus musculus domesticus DNA, BAC clone: B6Ng01-158K13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattccatatgttctgtgactctagagaaacctgactaataaatg
tggttatacacaccctgagaggcagaggcaggcagatctctatgaggcca
acctggtctacatagtacattctagtctagtcaggctacatagtaagacc
ctgcctctttctttctttctttctttctttctttctttctttctttcttt
ctttctttcttttttatttctttttttgtttttttttcttttctttttat
ttattttttttttcattttttaagaccctgcctcaaacaaacaaacaaac
aaacaatgttaaaatagggctggagagatatttcagtagttaagaacact
agctgctattccaaaggacccacatttgattcccagcacccacatggtag
cttgttatcatttgcaactccagttctagggaatttggtactttctggcc
tccaacagcaccagacacacaagaggtgtatgtacacgcgcgtgcgcaca
cacacacacacacacacacacacatacacacacacacacacacacaacac
acacacacacacacacacagagcaaatatcaaggggctgcaaagatggct
caatgcttaagagcacccttttctgtcctcccaggtaccagggtacatac
atggtatagagacatacacagacaaaacacttatacatgggctggtgaga
tggctcagtgggtaagagcacccgactgctcttccgaaggtcctgagttc
aaatcccagcaaccacgtggtggctcacaaccatccataacgagatctga
ctcccctcttctggagtgtctgaagacagctacagtgtacttacatataa
taaataaataaataaataaataaataaatctttaaaaaaaaaccactcat
acacattgtgattgatggttgatatatgcttggctcaggagtggcactat
taggaggtgtgccttgttgagtagtgtgtcactgtggtgtggggtataag
aacctcatcctagctgcaggaagtgaatattctgctgcagcttcaaatga
agatgtagaactctcagcttctctccacatgctgctggatgctgcatgct
tcgctttgaaagataatggcctgaacagctgacttgaaactcctcaaatt
aatgttcttgttaagagtgtttgccttgaagtctattctagcacaaacct
agaaccattaaacctatattagacaagccaggaatctattactatcgccc
gatta
gaattcaaggccagccagggctgcataaataagatcctaactaaaaaaca
aacaaacaaaaaccagcaaactcagccaataattaggaccaggatgttca
ttcattatttagcaagtgtatgctgaatatttggcctgctctgtaccaag
ttttaattagatgaagtaaaagcattgagcaacatcttctgctcgtgaac
tttatattcttgtgtgggaaatggataataaataagttaacagttattgt
ctgtgttatattgagtggaaaggcaagaggaggatgctgagagcatcttc
taattgaaatggccaagaaaggcattttgtggatagacgattggggaagg
ctgaatgaaaggaaatgcaagatgtgtgagtaccctgtattcagagaaaa
tggtcaggcgggagtgccgctcagaggcagagcactggtctgagatgact
gcacacagtcctgggttcagcctcaccactgcaaagaggaaacaaaacaa
aacaggttgccaagagctgaagaagctgtagtagagccagcaagatggct
cagcaggtataggcacttacatccaagcctaaagaccacctgagttgaat
ccctggaacccacgggaaggagagaagcaattcctgtacatatgtgatcc
tctgacctgcacacacataccatgaaagtgccaacttatacacaaagata
aataagtagatcagtaaatacataaatgtaatttatttaaagataaagtc
tggcgacagtaataaagtctgggtgaggatgaggaggcagctcaaggagg
cgatgaggaaagcggagctttgtgggccatagcatctagagttttatcta
aataggaaagaggctactggacaattttgaacaaataaataacaaaatat
ttttaataaaccagtctggcttttgggtaaagaaaactgtctgggcttga
gtagtgtgaggacagcagaaactctgaagagggtgaaggtgctggcttgg
ttcagtgggtaacagtagaacttgataagacctcatgttgtaaccagtgg
tgaattgctaaaccagttaggtgtaaaatgtgaggaaggagtgagagttc
tgtaaattccttacgtttcttggtagaaagttatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29848814_29849955
seq2: B6Ng01-158K13.g_68_1204

seq1  GAATTCAAGGCCAGCCAGGGCTGCATAAATAAGATCCTAACTAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCAGGGCTGCATAAATAAGATCCTAACTAAAAAACA  50

seq1  AACAAACAAAAACCAGCAAACTCAGCCAATAATTAGGACCAGGATGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAACCAGCAAACTCAGCCAATAATTAGGACCAGGATGTTCA  100

seq1  TTCATTATTTAGCAAGTGTATGCTGAATATTTGGCCTGCTCTGTACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTTAGCAAGTGTATGCTGAATATTTGGCCTGCTCTGTACCAAG  150

seq1  TTTTAATTAGATGAAGTAAAAGCATTGAGCAACATCTTCTGCTCGTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAGATGAAGTAAAAGCATTGAGCAACATCTTCTGCTCGTGAAC  200

seq1  TTTATATTCTTGTGTGGGAAATGGATAATAAATAAGTTAACAGTTATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTCTTGTGTGGGAAATGGATAATAAATAAGTTAACAGTTATTGT  250

seq1  CTGTGTTATATTGAGTGGAAAGGCAAGAGGAGGATGCTGAGAGCATCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTATATTGAGTGGAAAGGCAAGAGGAGGATGCTGAGAGCATCTTC  300

seq1  TAATTGAAATGGCCAAGAAAGGCATTTTGTGGATAGACGATTGGGGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAAATGGCCAAGAAAGGCATTTTGTGGATAGACGATTGGGGAAGG  350

seq1  CTGAATGAAAGGAAATGCAAGATGTGTGAGTACCCTGTATTCAGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGAAAGGAAATGCAAGATGTGTGAGTACCCTGTATTCAGAGAAAA  400

seq1  TGGTCAGGCGGGAGTGCCGCTCAGAGGCAGAGCACTGGTCTGAGATGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGCGGGAGTGCCGCTCAGAGGCAGAGCACTGGTCTGAGATGACT  450

seq1  GCACACAGTCCTGGGTTCAGCCTCACCACTGCAAAGAGGAAACAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGTCCTGGGTTCAGCCTCACCACTGCAAAGAGGAAACAAAACAA  500

seq1  AACAGGTTGCCAAGAGCTGAAGAAGCTGTAGTAGAGCCAGCAAGATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTTGCCAAGAGCTGAAGAAGCTGTAGTAGAGCCAGCAAGATGGCT  550

seq1  CAGCAGGTATAGGCACTTACATCCAAGCCTAAAGACCACCTGAGTTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTATAGGCACTTACATCCAAGCCTAAAGACCACCTGAGTTGAAT  600

seq1  CCCTGGAACCCACGGGAAGGAGAGAAGCAATTCCTGTACATATGTGATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAACCCACGGGAAGGAGAGAAGCAATTCCTGTACATATGTGATCC  650

seq1  TCTGACCTGCACACACATACCATGAAAGTGCCAACTTATACACAAAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTGCACACACATACCATGAAAGTGCCAACTTATACACAAAGATA  700

seq1  AATAAGTAGATCAGTAAATACATAAATGTAATTTATTTAAAGATAAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAGATCAGTAAATACATAAATGTAATTTATTTAAAGATAAAGTC  750

seq1  TGGCGACAGTAATAAAGTCTGGGTGAGGATGAGGAGGCAGCTCAAGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGACAGTAATAAAGTCTGGGTGAGGATGAGGAGGCAGCTCAAGGAGG  800

seq1  CGATGAGGAAGGCGGAGCTTTGTGGGCCATAGCATCTAGAGTTTTATCTA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGATGAGGAAAGCGGAGCTTTGTGGGCCATAGCATCTAGAGTTTTATCTA  850

seq1  AATAGGAAAGAGGCTACTGGACAATTTTGAACAAATAAATAACAAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAAGAGGCTACTGGACAATTTTGAACAAATAAATAACAAAATAT  900

seq1  TTTTAATAAACCAGTCTGGCTTTTGGGTAAAGAAAACTGTCTGGGCTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAAACCAGTCTGGCTTTTGGGTAAAGAAAACTGTCTGGGCTTGA  950

seq1  GTAGGTGTGAGGACAGCAGGAAACTCTG-AGAGGGTGAAGGTGCTGGCTT  999
      ||| |||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GTA-GTGTGAGGACAGCA-GAAACTCTGAAGAGGGTGAAGGTGCTGGCTT  998

seq1  GGTTCAGTGGGTAAACAGTAG-ACTTGATAAGACTCAATGTTGTAACCAG  1048
      |||||||||||| |||||||| ||||||||||||   |||||||||||||
seq2  GGTTCAGTGGGT-AACAGTAGAACTTGATAAGACCTCATGTTGTAACCAG  1047

seq1  TGG-GATTTGCTAAACCAGTTAGGTGTAAAATGTGAAGGAAGGAGTGAGA  1097
      ||| || |||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGTGAATTGCTAAACCAGTTAGGTGTAAAATGTG-AGGAAGGAGTGAGA  1096

seq1  GTCTCTGTAAATCACCTAACGTTTCTTGTGTAGGAAAGTTATTTG  1142
      || |||||||||  ||| |||||||||| ||| ||||||||||||
seq2  GT-TCTGTAAAT-TCCTTACGTTTCTTG-GTA-GAAAGTTATTTG  1137