BAC Information

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BAC

Clone NameB6Ng01-159B03
Chromosome6 (Build37)
Map Location 118,958,914 - 118,960,019
singlet/doubletsinglet
Overlap geneCacna1c
Upstream geneRasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159B03.bB6Ng01-159B03.g
ACCDH952845DH952846
length1,2331,093
definitionDH952845|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B03, 5' end.DH952846|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttctggagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttcgcctctataagtttcagtgtctctggttttaagtgaagttcctgtt
tcttagcagccatccatcatctctggctcttacagtctttctgcctcctc
ttatgcgtggattccagttgtggatctctgtgttagttcccgtctactgc
aagaagaaacctctctgatacaggctgagtgatgtctcctgtgcttggag
tgaaaacagtgctgcactgcaccctttttgtgactttgtgctgagttttg
gctatgttctgttattcttcatcatgtgccacttcttcttgaagggcctg
gcatagtgttgcacaactttaatcctatcattcagaggaagaaagatctt
tctgagttcgtggctaacctggtctatatagagagttagttacaggatag
ccagggctacacaaaccatgtcttaaaaaaataataaaatgaaaacatcc
aaacaaacaaaaacccatcatcatcatcatcatcaacaacaacaacaaca
aaaataccctgattctaattggattctgttgccatgtttctggctcctct
tcctgcccaactccaggcttggtaaggcagtagtaatattgataggactc
caggtcctatcacaaacctgtcctcagtatctcagtggtcacctattgtt
tctgaaagtctacttacacaatctgtgtctacatccttagacagaggata
ccagatctggagacttctgtcaaagatacctgtttgtggcattgtacgat
gtagaatgtttgggatgctgagattcttttttgtattggggagatctttg
agctaagaccggatgctgattgaagaacattttgatggtaacatgcttag
tcaccaacggcttttggacttgctagctggaaccgatcctgaatatctgc
ctcattttactctcactggtagaagatagaatg
gaattctttatagcaaactcagctatcagacagtgagaggggtaagaaag
tcaaaaggcaccgaggaaactatgggcctggatgacagtcctctgcagat
gcaagcaggaaggaaagagtaccaggcactcccttctacatacagcacac
tgtatgcatatatatacacgcaatcctggaatccaccctggtggaagagt
gctggctagtagaatacagcccaaaccacagcgccccaccccatccctca
gaacactggagcctgaacggatcttcttgcagcagaaaacatggacacaa
agtaacaaactaaagaacaaaatgaagaagtaaccaaccaaatcaaaacg
tgggcaattctaaccaattgcttcaaggaacaaatgaaattctcagtagg
aggtgtggaagattgcagatccggagggatctcaaggcaaacaaccagac
atcacatgcatgctttcttagggtcctgggctaaatcaactatcaaaacg
tgtttgagagcagaggtgtgcctcaatgaaagtatgtgtggtgtatgtac
atgcacgagcatgcacatacgtggagggtgggggaggattctaaactctt
catagaaatttaaatacagccccagctcctacggacattcccgggaacct
ctggccacgttggacagagaaggagatccagtcagggcagatcctcacat
ccccctctgtcatccaaacctcactcgtagctctgtagcaggcaatcacc
tgctgcagttcctgcctcctccctgtccgatctccagcagagcacacagg
tactcttcagtcttactccagtgcatcctgttatccccagccccagactc
cagcaggcattccctgggtcccagccagccaagcttccatagaagtaagt
aggccacagtgcaggtaggccggctgagcagtgggggtcagacccgactt
tccctcctctctccaaatcaggccctcagctcattccagctggtagtaga
tccatgcttatgcctccctcgggtgcgggctcaattccaagaaaaccatg
tgatcggagtggaaccctgctttctccctctctgtaacccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_118958914_118960019
seq2: B6Ng01-159B03.g_67_1159

seq1  GAATTCTTTATAGCAAACTCAGCTATCAGACAGTGAGAGGGGTAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAGCAAACTCAGCTATCAGACAGTGAGAGGGGTAAGAAAG  50

seq1  TCAAAAGGCACCGAGGAAACTATGGGCCTGGATGACAGTCCTCTGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGCACCGAGGAAACTATGGGCCTGGATGACAGTCCTCTGCAGAT  100

seq1  GCAAGCAGGAAGGAAAGAGTACCAGGCACTCCCTTCTACATACAGCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGGAAGGAAAGAGTACCAGGCACTCCCTTCTACATACAGCACAC  150

seq1  TGTATGCATATATATACACGCAATCCTGGAATCCACCCTGGTGGAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCATATATATACACGCAATCCTGGAATCCACCCTGGTGGAAGAGT  200

seq1  GCTGGCTAGTAGAATACAGCCCAAACCACAGCGCCCCACCCCATCCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTAGTAGAATACAGCCCAAACCACAGCGCCCCACCCCATCCCTCA  250

seq1  GAACACTGGAGCCTGAACGGATCTTCTTGCAGCAGAAAACATGGACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGGAGCCTGAACGGATCTTCTTGCAGCAGAAAACATGGACACAA  300

seq1  AGTAACAAACTAAAGAACAAAATGAAGAAGTAACCAACCAAATCAAAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAACTAAAGAACAAAATGAAGAAGTAACCAACCAAATCAAAACG  350

seq1  TGGGCAATTCTAACCAATTGCTTCAAGGAACAAATGAAATTCTCAGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATTCTAACCAATTGCTTCAAGGAACAAATGAAATTCTCAGTAGG  400

seq1  AGGTGTGGAAGATTGCAGATCCGGAGGGATCTCAAGGCAAACAACCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGAAGATTGCAGATCCGGAGGGATCTCAAGGCAAACAACCAGAC  450

seq1  ATCACATGCATGCTTTCTTAGGGTCCTGGGCTAAATCAACTATCAAAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATGCATGCTTTCTTAGGGTCCTGGGCTAAATCAACTATCAAAACG  500

seq1  TGTTTGAGAGCAGAGGTGTGCCTCAATGAAAGTATGTGTGGTGTATGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGAGCAGAGGTGTGCCTCAATGAAAGTATGTGTGGTGTATGTAC  550

seq1  ATGCACGAGCATGCACATACGTGGAGGGTGGGGGAGGATTCTAAACTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGAGCATGCACATACGTGGAGGGTGGGGGAGGATTCTAAACTCTT  600

seq1  CATAGAAATTTAAATACAGCCCCAGCTCCTACGGACATTCCCGGGAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAATTTAAATACAGCCCCAGCTCCTACGGACATTCCCGGGAACCT  650

seq1  CTGGCCACGTTGGACAGAGAAGGAGATCCAGTCAGGGCAGATCCTCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACGTTGGACAGAGAAGGAGATCCAGTCAGGGCAGATCCTCACAT  700

seq1  CCCCCTCTGTCATCCAAACCTCACTCGTAGCTCTGTAGCAGGCAATCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTGTCATCCAAACCTCACTCGTAGCTCTGTAGCAGGCAATCACC  750

seq1  TGCTGCAGTTCCTGCCTCCTCCCTGTCCGAATCTCCAGCAGAGCACACAG  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCTGCAGTTCCTGCCTCCTCCCTGTCCG-ATCTCCAGCAGAGCACACAG  799

seq1  GTACTCTCCAGTCTTACTCCAGTGCATCCTGTTAT-CCCAGCCCCAGACT  849
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  GTACTCTTCAGTCTTACTCCAGTGCATCCTGTTATCCCCAGCCCCAGACT  849

seq1  CCAGCAGGCATTCCCTGGGTCCCAGCCAGCCAAGCCTTCCAGAGAAGTAA  899
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  CCAGCAGGCATTCCCTGGGTCCCAGCCAGCCAAG-CTTCCATAGAAGTAA  898

seq1  GTAGGCCACAGTGCAGGTAGGCCGGCAGAGCAGGTGGGGTCAGACCCCGA  949
      |||||||||||||||||||||||||| ||||||  ||||||||| |||||
seq2  GTAGGCCACAGTGCAGGTAGGCCGGCTGAGCAGTGGGGGTCAGA-CCCGA  947

seq1  CTCTTCCCTCCTCTCCTCCAAATCCAGGCCCTCAGCCTCATTCCCAGCTT  999
      || ||||||||||| |||||||| ||||||||||| |||||| ||||| |
seq2  CT-TTCCCTCCTCT-CTCCAAAT-CAGGCCCTCAG-CTCATT-CCAGC-T  991

seq1  GGTAGTAGACTCCATGTCTTAGGCTCTCCTCGGGTTCGGTCTCCATTTCC  1049
      ||||||||| |||||| |||| ||   |||||||| ||| || || ||||
seq2  GGTAGTAGA-TCCATG-CTTATGCCTCCCTCGGGTGCGGGCT-CAATTCC  1038

seq1  AAGAAACACAT-TGATCCTGATGGAACACCCTGCTTTCCTCCCTCCTATG  1098
      ||||||  ||| |||||    ||||  |||||||||| |||||| || ||
seq2  AAGAAAACCATGTGATCGGAGTGGA--ACCCTGCTTT-CTCCCT-CTCTG  1084

seq1  -AACCCACT  1106
       ||||||||
seq2  TAACCCACT  1093