BAC Information

Click to search

BAC

Clone NameB6Ng01-159J21
Chromosome6 (Build37)
Map Location 46,398,928 - 46,560,425
singlet/doubletdoublet
Overlap geneCntnap2, Rbpsuh-rs3
Upstream genenone
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159J21.bB6Ng01-159J21.g
ACCDH953229DH953230
length920790
definitionDH953229|Mus musculus domesticus DNA, BAC clone: B6Ng01-159J21, 5' end.DH953230|Mus musculus domesticus DNA, BAC clone: B6Ng01-159J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,559,671 - 46,560,425)(46,398,928 - 46,399,718)
sequence
gaattccagcctctgtcttcatggtggacatcctctgactgtagtcttaa
ctcttgatgagttatcctttattcattttagatgagagcaatttttgaca
catgtactagaaaccagtacaatctttcaaccctgaaatacctggtatgg
ctttggggatgaagagtgaagaagaggtcacaaatttggtatgttaaaac
acatagagacaataaagtactaggtaaaagaataaagcaatagaaaaaag
catataggtgagagattaaaaaccaaaccaaacactgttccctgcttgtg
gaataattactgcttctaacctaattaacttggatacacacacacataca
cacacacagacacacacatacactcatgtacatatgtacacgcacataca
catattatagaaaaccatggcaaaactaaagtttaagagcaagtgactct
gttgtgcctagactcaactcaattgtttatctacaacacaattcctgcaa
gtaaggctcagggataattgtagaagaagaagggatagaagtattgtaaa
agtcagaggaataggaaatttgctgtgtaattttgtctcctagaaaatca
gtggaaatatacccatcaagtctcatcaacatggctgcctaaaaaagtcc
tgaacaaggattatactaataaacatgctaacatgcaaaaagggagatct
tattgggcctcaaacccagacaattaactacaggtaactaaggaatactg
acagtaggggagaaatagtctttttcaggaaagagtctccatattggtta
tccaataccaagaggtcagttctaaaataatatacatacaagtaacttta
tatggtcagagcatataaatatatgaattcatgtatttaaacacttacca
catcccacacatacatgcat
gaattcagaaatctgcttccctctgtctccagggattatagttgtgtacc
ttacagggcctatgattttcatggccactatgcctcaagatcaagatcac
aggtgtgccctccatttctgaattgtatttcattgcagacatagtcaagt
tgacaaccatcaatagccatcacaggcatattgactccactcacaaacta
tactgtgacactccagagcaaagggtactatctagaattcacataaggaa
ttatatgggctgtctttgacccaagtggtataaaatcattcttctaccca
gataacactgtgtgtctctctctaacaaaatcatgacctttcttttccag
gcactcaggatttaaaatatacttcagtacaaagaaattcatttgcaaat
gtgcatggatgtgtacacacactcgtgtgtgtttgtgtgtgtatgtataa
taggaagggggagactaaagaaccaaagactcataaagagtataatccca
aggaacttgaagggggaggaaggtgatagaggtaaaaaaggacagtctta
ttctcaggaccacttgagatgtttctccagtcagtactactttgtctgct
ttatggtatgccaggccaatattttgtgtactagtatctatttatagtgt
ttagtgtatttaaaatgaagagccctctcaatttcagaagtgatttgaat
agaaagttctattctagatttcagaagataaggcatgacgtgaccctgag
gaaagtgtgaagaagacaggaaaggaaacttgctgatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46559671_46560425
seq2: B6Ng01-159J21.b_41_795 (reverse)

seq1  ACTGTCAGTATTCCTTAGTTACCTGTAGTTAATTGTCTGGGTTTGAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGTATTCCTTAGTTACCTGTAGTTAATTGTCTGGGTTTGAGGCC  50

seq1  CAATAAGATCTCCCTTTTTGCATGTTAGCATGTTTATTAGTATAATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGATCTCCCTTTTTGCATGTTAGCATGTTTATTAGTATAATCCTT  100

seq1  GTTCAGGACTTTTTTAGGCAGCCATGTTGATGAGACTTGATGGGTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGACTTTTTTAGGCAGCCATGTTGATGAGACTTGATGGGTATATT  150

seq1  TCCACTGATTTTCTAGGAGACAAAATTACACAGCAAATTTCCTATTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGATTTTCTAGGAGACAAAATTACACAGCAAATTTCCTATTCCTC  200

seq1  TGACTTTTACAATACTTCTATCCCTTCTTCTTCTACAATTATCCCTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTACAATACTTCTATCCCTTCTTCTTCTACAATTATCCCTGAGC  250

seq1  CTTACTTGCAGGAATTGTGTTGTAGATAAACAATTGAGTTGAGTCTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGCAGGAATTGTGTTGTAGATAAACAATTGAGTTGAGTCTAGGC  300

seq1  ACAACAGAGTCACTTGCTCTTAAACTTTAGTTTTGCCATGGTTTTCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAGTCACTTGCTCTTAAACTTTAGTTTTGCCATGGTTTTCTATA  350

seq1  ATATGTGTATGTGCGTGTACATATGTACATGAGTGTATGTGTGTGTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTATGTGCGTGTACATATGTACATGAGTGTATGTGTGTGTCTGT  400

seq1  GTGTGTGTATGTGTGTGTGTATCCAAGTTAATTAGGTTAGAAGCAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTGTGTGTGTATCCAAGTTAATTAGGTTAGAAGCAGTAAT  450

seq1  TATTCCACAAGCAGGGAACAGTGTTTGGTTTGGTTTTTAATCTCTCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACAAGCAGGGAACAGTGTTTGGTTTGGTTTTTAATCTCTCACCT  500

seq1  ATATGCTTTTTTCTATTGCTTTATTCTTTTACCTAGTACTTTATTGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTTTTCTATTGCTTTATTCTTTTACCTAGTACTTTATTGTCTC  550

seq1  TATGTGTTTTAACATACCAAATTTGTGACCTCTTCTTCACTCTTCATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTTAACATACCAAATTTGTGACCTCTTCTTCACTCTTCATCCC  600

seq1  CAAAGCCATACCAGGTATTTCAGGGTTGAAAGATTGTACTGGTTTCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATACCAGGTATTTCAGGGTTGAAAGATTGTACTGGTTTCTAGT  650

seq1  ACATGTGTCAAAAATTGCTCTCATCTAAAATGAATAAAGGATAACTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTCAAAAATTGCTCTCATCTAAAATGAATAAAGGATAACTCATC  700

seq1  AAGAGTTAAGACTACAGTCAGAGGATGTCCACCATGAAGACAGAGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTAAGACTACAGTCAGAGGATGTCCACCATGAAGACAGAGGCTGG  750

seq1  AATTC  755
      |||||
seq2  AATTC  755

seq1: chr6_46398928_46399718
seq2: B6Ng01-159J21.g_68_857

seq1  GAATTCAGAAATCTGCTTCCCTCTGTCTCCAGGGATTATAGTTGTGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCTTCCCTCTGTCTCCAGGGATTATAGTTGTGTACC  50

seq1  TTACAGGGCCTATGATTTTCATGGCCACTATGCCTCAAGATCAAGATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGCCTATGATTTTCATGGCCACTATGCCTCAAGATCAAGATCAC  100

seq1  AGGTGTGCCCTCCATTTCTGAATTGTATTTCATTGCAGACATAGTCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCCCTCCATTTCTGAATTGTATTTCATTGCAGACATAGTCAAGT  150

seq1  TGACAACCATCAATAGCCATCACAGGCATATTGACTCCACTCACAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACCATCAATAGCCATCACAGGCATATTGACTCCACTCACAAACTA  200

seq1  TACTGTGACACTCCAGAGCAAAGGGTACTATCTAGAATTCACATAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGACACTCCAGAGCAAAGGGTACTATCTAGAATTCACATAAGGAA  250

seq1  TTATATGGGCTGTCTTTGACCCAAGTGGTATAAAATCATTCTTCTACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGGCTGTCTTTGACCCAAGTGGTATAAAATCATTCTTCTACCCA  300

seq1  GATAACACTGTGTGTCTCTCTCTAACAAAATCATGACCTTTCTTTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACTGTGTGTCTCTCTCTAACAAAATCATGACCTTTCTTTTCCAG  350

seq1  GCACTCAGGATTTAAAATATACTTCAGTACAAAGAAATTCATTTGCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGATTTAAAATATACTTCAGTACAAAGAAATTCATTTGCAAAT  400

seq1  GTGCATGGATGTGTACACACACTCGTGTGTGTTTGTGTGTGTATGTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGATGTGTACACACACTCGTGTGTGTTTGTGTGTGTATGTATAA  450

seq1  TAGGAAGGGGGAGACTAAAGAACCAAAGACTCATAAAGAGTATAATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGGGGAGACTAAAGAACCAAAGACTCATAAAGAGTATAATCCCA  500

seq1  AGGAACTTGAAGGGGGAGGAAGGTGATAGAGGTAAAAAAGGACAGTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTGAAGGGGGAGGAAGGTGATAGAGGTAAAAAAGGACAGTCTTA  550

seq1  TTCTCAGGACCACTTGAGATGTTTCTCCAGTCAGTACTACTTTGTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGACCACTTGAGATGTTTCTCCAGTCAGTACTACTTTGTCTGCT  600

seq1  TTATGGTATGCCAGGCCAATA-TTTGTGTACTAGTATCTATTTATAGTG-  648
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  TTATGGTATGCCAGGCCAATATTTTGTGTACTAGTATCTATTTATAGTGT  650

seq1  TTAGTGTATTTAAAATGAAGAGCTCTCTCAA-TTCAGAAGTGATTTG-AG  696
      ||||||||||||||||||||||| ||||||| ||||||||||||||| | 
seq2  TTAGTGTATTTAAAATGAAGAGCCCTCTCAATTTCAGAAGTGATTTGAAT  700

seq1  AGAAAGATTCTATTCTAGATTTCAGAAGAAAAGGCAATGACGTGACCCTG  746
      |||||| |||||||||||||||||||||| ||||| ||||||||||||||
seq2  AGAAAG-TTCTATTCTAGATTTCAGAAGATAAGGC-ATGACGTGACCCTG  748

seq1  AGGGAAAGTGTGAAGAAGACAGGGAAAGGAAAGCATGCTGATCTG  791
      | ||||||||||||||||||| |||||||||| | ||||||||||
seq2  A-GGAAAGTGTGAAGAAGACA-GGAAAGGAAA-CTTGCTGATCTG  790