BAC Information

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BAC

Clone NameB6Ng01-160G05
Chromosome6 (Build37)
Map Location 93,669,032 - 93,827,784
singlet/doubletdoublet
Overlap geneMagi1
Upstream geneA730049H05Rik, LOC384461, LOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160G05.bB6Ng01-160G05.g
ACCDH953773DH953774
length1,1581,100
definitionDH953773|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G05, 5' end.DH953774|Mus musculus domesticus DNA, BAC clone: B6Ng01-160G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,826,626 - 93,827,784)(93,669,032 - 93,670,145)
sequence
gaattcaaggctaacttggtctacaaatcgagttctgggacagccagggc
tacacgtagagaaaccctgtctagatttaagaagaaggagaaaagaaaaa
acagaagtaaaagagaccaagattagggacagtttctgcctcactgtcag
cgagtgcctcctacttcagtccctctcccttgactgtgtgcagcagtaat
gaaaagctgggcttccacgcatgctaggtccttcactagcccttcacatt
aattgcatctctgctggtgccctttctctggtaaacaggtgcccttggga
ccgtgttcttaaagattactttgtggatgctggcatggatgctgactctg
ggatttatgtcctggtgtccctttgaaggcaacatttaactgctgaagag
atttgctagggttgtgttcagcctaaattaaatgtaaatataacagacca
gtgggatctgttacgacagagtacaaagctccgttgccgccccctcatct
tcctttcttctttaattagcctctttgacctgataaaattattccgagca
tgattctcttagcgctttttatatcagaacctttctgagttttgtttgtt
tttttgtttattagtttgggggtctttgttttctattttcttttcctttt
ttaatttttctctttccttttctatatatttagatactgtcatgacctgc
ctggcttttgtgtggctggacgggtcatgtgggatattcctgtttacact
tcccaggttcaaggctcacttggagagaactgaaacaatcctctattttg
atattgggacttctcttcaggtgaaggttgaggtttagccaggtcgagac
aagactgtcccaacgtccatgtgaatgtatccaggcacatgctgcaagtt
ttagactcctgttggggtagtgtgtatagatgcttttaacagtaacagca
tgtcctcgcagtcttgacagtattgctaatggatatggctcggtgtgctc
tgtggtcatcatggtgagtgtgagtggtgagcaccaaacgtgtgagcaca
gcacctgaaccgcattccatgtggaagaagctaaacccgccttgactgta
tggtagctttgcctttaaagttatgctggccccttccaccaaaccccaag
tgactttg
gaattccaacaccatgttctttcaccttctttggctaactgacatcatct
gtgaaaaagtgattaggatcagctgatttcgatcaggggaaaaaaaccat
catttttgctgagttaattaacatataaaaagatttagggaaggattact
tgcagttcagactgagtggaacaatttttatatgactttaatttaaaaga
attgggcgcttttattggtcaataggctgtccttaacggatctgtatcaa
attacattaatgagtcactgcatatgcttcaaactacatactgttgcact
gttatgttcacattttctcttaattaatacacacttaatagaataagaca
agtttcactaccatcaatttttattaatctctattgatcagcattgcact
gacccacctccacaaaacttcttgtagagtctccaactggcttagtcaga
ctcatatctgggcaatctctaactgtctcttacgccactgtagggtaaag
gacattttcattctttgccacggaggaacgatctcacattccctacagtg
ccttcacaaagacacacactgcagcatcctgatatacaggaaaactggaa
actaccagaacttctatatagcctgcagggtaaccaaccacaaagcattc
cacacgagttaaaaggaatgagctctctctacaggtaacaatgccactgc
ttccaaaacataacgctggagtgtggctagcagagagacatgtaactgga
gagaggtggcaacacagacacacagtttttgccttctgtgaatgttccca
aattgatatcagggacattattcattactacttagaattctgatatcaaa
gaggtagtaagatagcaattttaaaataaacttaattagtgatagaactc
ctacatatcccaaatattatataatatcaatcagcattaaagaaacagag
ctaaccactaaagcatgtctgtgtgtctctaggaggctgctactgatatg
ctagatccagctacctcagaagaatgcattttgcacaaatagaacctctt
tatagaaagggctttttttttctctgctagtgagttactgaaacttcatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93826626_93827784
seq2: B6Ng01-160G05.b_47_1204 (reverse)

seq1  CAAAGTCACTTGGAGCTCTGGTGGAAGGGG-CAGCATTAACTCTAAGGTC  49
      ||||||||||||| | | |||||||||||| ||||| ||||| ||| | |
seq2  CAAAGTCACTTGG-GGTTTGGTGGAAGGGGCCAGCA-TAACTTTAAAGGC  48

seq1  AAGCGTCACTTCCAGGTCATGCGGGTTTTGCTTCTTCCACTTGGAATGCG  99
      ||   |  | | |||   | |||||||| ||||||||||| |||||||||
seq2  AAAGCTACCATACAGTCAAGGCGGGTTTAGCTTCTTCCACATGGAATGCG  98

seq1  GGTCAGGTGCTGTGCTCACACGTTT-GTGCTCA-CACTCACACTCACCAT  147
      | ||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  GTTCAGGTGCTGTGCTCACACGTTTGGTGCTCACCACTCACACTCACCAT  148

seq1  GATGTACACAGAGCACACCGAGCCATTTTCCATTAGCAATACTGTCAAGA  197
      ||||  ||||||||||||||||||| | ||||||||||||||||||||||
seq2  GATGACCACAGAGCACACCGAGCCA-TATCCATTAGCAATACTGTCAAGA  197

seq1  CTGCGAGGACATGCTTGTACCTGTT-AAAGCATCTTATACACACTATCCC  246
      |||||||||||||| |||  ||||| |||||||| ||||||||||| |||
seq2  CTGCGAGGACATGC-TGTTACTGTTAAAAGCATC-TATACACACTACCCC  245

seq1  AACAGGAGTCTAAAACTTGCAGCATGTGCCTGGATAC-TTCACATGGACG  295
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACAGGAGTCTAAAACTTGCAGCATGTGCCTGGATACATTCACATGGACG  295

seq1  TTGGGACAGTCTTTGTCTCGACCTGGCTAAACCTCAACCTTCACTTGAAG  345
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TTGGGACAGTC-TTGTCTCGACCTGGCTAAACCTCAACCTTCACCTGAAG  344

seq1  AGAAGTCCCAATATCAAAATAGAGGATTGTTTCAGTTCTCTCCAAGTGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCCAATATCAAAATAGAGGATTGTTTCAGTTCTCTCCAAGTGAG  394

seq1  CCTTGAACCTGGGAAGTGTAAACAGGAATATCCCACATGACCCGTCCAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACCTGGGAAGTGTAAACAGGAATATCCCACATGACCCGTCCAGC  444

seq1  CACACAAAAGCCAGGCAGGTCATGACAGTATCTAAATATATAGAAAAGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAGCCAGGCAGGTCATGACAGTATCTAAATATATAGAAAAGGA  494

seq1  AAGAGAAAAATTAAAAAAGGAAAAGAAAATAGAAAACAAAGACCCCCAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAATTAAAAAAGGAAAAGAAAATAGAAAACAAAGACCCCCAAA  544

seq1  CTAATAAACAAAAAAACAAACAAAACTCAGAAAGGTTCTGATATAAAAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAACAAAAAAACAAACAAAACTCAGAAAGGTTCTGATATAAAAAG  594

seq1  CGCTAAGAGAATCATGCTCGGAATAATTTTATCAGGTCAAAGAGGCTAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAGAGAATCATGCTCGGAATAATTTTATCAGGTCAAAGAGGCTAAT  644

seq1  TAAAGAAGAAAGGAAGATGAGGGGGCGGCAACGGAGCTTTGTACTCTGTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGAAAGGAAGATGAGGGGGCGGCAACGGAGCTTTGTACTCTGTC  694

seq1  GTAACAGATCCCACTGGTCTGTTATATTTACATTTAATTTAGGCTGAACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGATCCCACTGGTCTGTTATATTTACATTTAATTTAGGCTGAACA  744

seq1  CAACCCTAGCAAATCTCTTCAGCAGTTAAATGTTGCCTTCAAAGGGACAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTAGCAAATCTCTTCAGCAGTTAAATGTTGCCTTCAAAGGGACAC  794

seq1  CAGGACATAAATCCCAGAGTCAGCATCCATGCCAGCATCCACAAAGTAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATAAATCCCAGAGTCAGCATCCATGCCAGCATCCACAAAGTAAT  844

seq1  CTTTAAGAACACGGTCCCAAGGGCACCTGTTTACCAGAGAAAGGGCACCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAACACGGTCCCAAGGGCACCTGTTTACCAGAGAAAGGGCACCA  894

seq1  GCAGAGATGCAATTAATGTGAAGGGCTAGTGAAGGACCTAGCATGCGTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATGCAATTAATGTGAAGGGCTAGTGAAGGACCTAGCATGCGTGG  944

seq1  AAGCCCAGCTTTTCATTACTGCTGCACACAGTCAAGGGAGAGGGACTGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGCTTTTCATTACTGCTGCACACAGTCAAGGGAGAGGGACTGAA  994

seq1  GTAGGAGGCACTCGCTGACAGTGAGGCAGAAACTGTCCCTAATCTTGGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGGCACTCGCTGACAGTGAGGCAGAAACTGTCCCTAATCTTGGTC  1044

seq1  TCTTTTACTTCTGTTTTTTCTTTTCTCCTTCTTCTTAAATCTAGACAGGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTTCTGTTTTTTCTTTTCTCCTTCTTCTTAAATCTAGACAGGG  1094

seq1  TTTCTCTACGTGTAGCCCTGGCTGTCCCAGAACTCGATTTGTAGACCAAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTACGTGTAGCCCTGGCTGTCCCAGAACTCGATTTGTAGACCAAG  1144

seq1  TTAGCCTTGAATTC  1159
      ||||||||||||||
seq2  TTAGCCTTGAATTC  1158

seq1: chr6_93669032_93670145
seq2: B6Ng01-160G05.g_68_1167

seq1  GAATTCCAACACCATGTTCTTTCACCTTCTTTGGCTAACTGACATCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACCATGTTCTTTCACCTTCTTTGGCTAACTGACATCATCT  50

seq1  GTGAAAAAGTGATTAGGATCAGCTGATTTCGATCAGGGGAAAAAAACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAGTGATTAGGATCAGCTGATTTCGATCAGGGGAAAAAAACCAT  100

seq1  CATTTTTGCTGAGTTAATTAACATATAAAAAGATTTAGGGAAGGATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGCTGAGTTAATTAACATATAAAAAGATTTAGGGAAGGATTACT  150

seq1  TGCAGTTCAGACTGAGTGGAACAATTTTTATATGACTTTAATTTAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTCAGACTGAGTGGAACAATTTTTATATGACTTTAATTTAAAAGA  200

seq1  ATTGGGCGCTTTTATTGGTCAATAGGCTGTCCTTAACGGATCTGTATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCGCTTTTATTGGTCAATAGGCTGTCCTTAACGGATCTGTATCAA  250

seq1  ATTACATTAATGAGTCACTGCATATGCTTCAAACTACATACTGTTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTAATGAGTCACTGCATATGCTTCAAACTACATACTGTTGCACT  300

seq1  GTTATGTTCACATTTTCTCTTAATTAATACACACTTAATAGAATAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTTCACATTTTCTCTTAATTAATACACACTTAATAGAATAAGACA  350

seq1  AGTTTCACTACCATCAATTTTTATTAATCTCTATTGATCAGCATTGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACTACCATCAATTTTTATTAATCTCTATTGATCAGCATTGCACT  400

seq1  GACCCACCTCCACAAAACTTCTTGTAGAGTCTCCAACTGGCTTAGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCTCCACAAAACTTCTTGTAGAGTCTCCAACTGGCTTAGTCAGA  450

seq1  CTCATATCTGGGCAATCTCTAACTGTCTCTTACGCCACTGTAGGGTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCTGGGCAATCTCTAACTGTCTCTTACGCCACTGTAGGGTAAAG  500

seq1  GACATTTTCATTCTTTGCCACGGAGGAACGATCTCACATTCCCTACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTCATTCTTTGCCACGGAGGAACGATCTCACATTCCCTACAGTG  550

seq1  CCTTCACAAAGACACACACTGCAGCATCCTGATATACAGGAAAACTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAAAGACACACACTGCAGCATCCTGATATACAGGAAAACTGGAA  600

seq1  ACTACCAGAACTTCTATATAGCCTGCAGGGTAACCAACCACAAAGCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAGAACTTCTATATAGCCTGCAGGGTAACCAACCACAAAGCATTC  650

seq1  CACACGAGTTAAAAGGAATGAGCTCTCTCTACAGGTAACAATGCCACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGAGTTAAAAGGAATGAGCTCTCTCTACAGGTAACAATGCCACTGC  700

seq1  TTCCAAAACATAACGCTGGAGTGTGGCTAGCAGAGAGACATGTAACTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAACATAACGCTGGAGTGTGGCTAGCAGAGAGACATGTAACTGGA  750

seq1  GAGAGGTGGCAACACAGACACACAGTTTTTGCCTTCTGTGAATGTTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGCAACACAGACACACAGTTTTTGCCTTCTGTGAATGTTCCCA  800

seq1  AATTGATATCAGGGACATTATTCATTACTACTTAGAATTCTGATATCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATATCAGGGACATTATTCATTACTACTTAGAATTCTGATATCAAA  850

seq1  GAGGTAGTAAGATAGCAATTTTAAAATAAACTTAATTAGTGAATAGAACT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGGTAGTAAGATAGCAATTTTAAAATAAACTTAATTAGTG-ATAGAACT  899

seq1  CCTACATATCCCAAATATAATATAATATCAATCAGCATTAAAGAAACAGA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTACATATCCCAAATATTATATAATATCAATCAGCATTAAAGAAACAGA  949

seq1  GCTAACCAACTAAAGCATGTCTGTGTGTCCTCTAGGAAGGCTGCCTACTG  1000
      ||||||| |||||||||||||||||||| ||||||| |||||| ||||||
seq2  GCTAACC-ACTAAAGCATGTCTGTGTGT-CTCTAGG-AGGCTG-CTACTG  995

seq1  ATATGCTAGAAGGCCCCAGCTAACCTCAGAGGAATTGCATTTTGCAACAA  1050
      ||||||||||     |||||| |||||||| ||| |||||||||| ||||
seq2  ATATGCTAGA----TCCAGCT-ACCTCAGAAGAA-TGCATTTTGC-ACAA  1038

seq1  ATAAGAACCTCTTTATAAGAAGGGCTTTATTTTTCTCTGCTAGTGAGTTA  1100
      || ||||||||||||||  ||||||||| |||||||||||||||||||||
seq2  AT-AGAACCTCTTTATAGAAAGGGCTTTTTTTTTCTCTGCTAGTGAGTTA  1087

seq1  CTGAAACTTTCATT  1114
      ||||||| ||||||
seq2  CTGAAAC-TTCATT  1100