BAC Information

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BAC

Clone NameB6Ng01-160I15
Chromosome6 (Build37)
Map Location 10,852,231 - 10,980,878
singlet/doubletdoublet
Overlap geneAA545190
Upstream geneLOC330264, LOC100040285, LOC667650
Downstream geneNdufa4, Phf14, LOC100040844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160I15.bB6Ng01-160I15.g
ACCDH953885DH953886
length1,138897
definitionDH953885|Mus musculus domesticus DNA, BAC clone: B6Ng01-160I15, 5' end.DH953886|Mus musculus domesticus DNA, BAC clone: B6Ng01-160I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,852,231 - 10,853,406)(10,980,357 - 10,980,878)
sequence
gaattctggtctctttaaaaacacagaaatattatgtaaatatggttttg
ctttaatcccaggtatgggatatggggctgcttcaaagtgtccagagcag
ctattatttgtcttatgctctggcaaaggcatgattttgccagctgttga
tagtttacatttgaaatccttaattcttgcctttaggtaatatccactaa
cactttttaaatgcatttataaaatgtatatttacttgtgaggacatttg
atgcaaagacattctctaaattatatcagcatattttaatatttaaattg
tgagaaagaaggaaaccacagaagaatatttttatcaaaagtcaaaactt
acaatctatagaattctatatgagaaaaatatttctgtatttgacagcaa
cagtcaattttttaaaaaggatgatgcatgtaaaaactgaatttaaaaag
acataaaagacagaaaaaccaataataaataaagtaattcttgtgaatat
acaataaatagaatatacagggaaattcttgagttttaggtatatggaaa
taagtgattatcttgcgctgaatctaggcataaaaacaataagtagttgt
gaacataaaagactaaaggtgggataaaattgtattgcgtattttggtaa
aggatacagaaagatttaccatatttgtaatgaacatttatgtatttaac
tactaatattgaagcactaaacgtaagtagttttgtatttttgtattttt
acatatggttttaaacatttagcttagattttaaattatttgcaatctac
ttatataaaattcatatacatcctacatgtggcacgtgcataatctctct
atttatgacagtccagggccacattctttttggctttataaattgggtaa
taatataaagcatattccagacagacatgaaactaaaactacattatagc
aagggacttgatacatttagagtcactcgcagaaagagagtcgctatgtt
ccagagtgaatgcacagctctactcatatactatgcttctgaatatttta
tgacacgctaatgaattaggtagtaagagatcacacatactggattcaca
ttcaagtttatgcatcagggtctaacttgtgtctctga
gaattcagcagaaatcaaaaaaaaaaaaaaaaaaaaaagaacacaaatcc
atgcattcttatctatctccttgtacaaagctcaagtgcaaggcaatcaa
ggaacagcacataaaaacagatacactaaaactaatagaagaaaatctgg
agaagagcctcaagcacatgggcacggggaaattttcctgaacagaaaac
caatggtctgggctgtaagatcaactatagacaaatgtaatttcataaaa
ttgaaaagcttctgtaacgcaaaggacactggcagtaggacaaaaagata
accaacagagtcggaaaaggttttatcagtccaatacagggctaatatcc
aatatatgcaaagaactcaagaaattaactccaaagatccaaataacgct
attaaaaatggggtacagagctaaacaaagaattttcaatataggaatac
tgaattgccaagaagcacataaagaaatgttcaacatccttagtcataag
ggaaatgcaaatcaaaacaactctgagattccacctcacaccagtcagaa
tggctaagattaaaataaataaataaataaataaataaataaataaataa
ataaataaaacaaaacaaaaaacctcacatgatatcagatgctggtgagg
atttggagaaagaggaacactccttcattgttgatgggattgcaatctgg
tacaacccctttcggaaataagtctggtggtttctcagaaagttggacat
agctataccactctttggcatattcccagaagatgatccaacatatatca
aggacacatgctccactctgtccataggagccttatttataatagccaga
agcttggaaagaacccagacatccttcaaccaaggaagggatacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_10852231_10853406
seq2: B6Ng01-160I15.b_45_1182

seq1  GAATTCTGGTCTCTTTAAAAACACAGAAATATTATGTAAATATGGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCTCTTTAAAAACACAGAAATATTATGTAAATATGGTTTTG  50

seq1  CTTTAATCCCAGGTATGGGATATGGGGCTGCTTCAAAGTGTCCAGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGGTATGGGATATGGGGCTGCTTCAAAGTGTCCAGAGCAG  100

seq1  CTATTATTTGTCTTATGCTCTGGCAAAGGCATGATTTTGCCAGCTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTGTCTTATGCTCTGGCAAAGGCATGATTTTGCCAGCTGTTGA  150

seq1  TAGTTTACATTTGAAATCCTTAATTCTTGCCTTTAGGTAATATCCACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACATTTGAAATCCTTAATTCTTGCCTTTAGGTAATATCCACTAA  200

seq1  CACTTTTTAAATGCATTTATAAAATGTATATTTACTTGTGAGGACATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTAAATGCATTTATAAAATGTATATTTACTTGTGAGGACATTTG  250

seq1  ATGCAAAGACATTCTCTAAATTATATCAGCATATTTTAATATTTAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGACATTCTCTAAATTATATCAGCATATTTTAATATTTAAATTG  300

seq1  TGAGAAAGAAGGAAACCACAGAAGAATATTTTTATCAAAAGTCAAAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGAAGGAAACCACAGAAGAATATTTTTATCAAAAGTCAAAACTT  350

seq1  ACAATCTATAGAATTCTATATGAGAAAAATATTTCTGTATTTGACAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTATAGAATTCTATATGAGAAAAATATTTCTGTATTTGACAGCAA  400

seq1  CAGTCAATTTTTTAAAAAGGATGATGCATGTAAAAACTGAATTTAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATTTTTTAAAAAGGATGATGCATGTAAAAACTGAATTTAAAAAG  450

seq1  ACATAAAAGACAGAAAAACCAATAATAAATAAAGTAATTCTTGTGAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAGACAGAAAAACCAATAATAAATAAAGTAATTCTTGTGAATAT  500

seq1  ACAATAAATAGAATATACAGGGAAATTCTTGAGTTTTAGGTATATGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATAGAATATACAGGGAAATTCTTGAGTTTTAGGTATATGGAAA  550

seq1  TAAGTGATTATCTTGCGCTGAATCTAGGCATAAAAACAATAAGTAGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATTATCTTGCGCTGAATCTAGGCATAAAAACAATAAGTAGTTGT  600

seq1  GAACATAAAAGACTAAAGGTGGGATAAAATTGTATTGCGTATTTTGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAAAGACTAAAGGTGGGATAAAATTGTATTGCGTATTTTGGTAA  650

seq1  AGGATACAGAAAGATTTACCATATTTGTAATGAACATTTATGTATTTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACAGAAAGATTTACCATATTTGTAATGAACATTTATGTATTTAAC  700

seq1  TACTAATATTGAAGCACTAAACGTAAGTAGTTTTGTATTTTTGTATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATATTGAAGCACTAAACGTAAGTAGTTTTGTATTTTTGTATTTTT  750

seq1  ACATATGGTTTTAAACATTTAGCTTAGATTTTAAATTATTTGCAATCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGTTTTAAACATTTAGCTTAGATTTTAAATTATTTGCAATCTAC  800

seq1  TTATATAAAAATTCATATACATCCTACATGTGGCACGTGCATAATCTCTC  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAT-AAAATTCATATACATCCTACATGTGGCACGTGCATAATCTCTC  849

seq1  TATTTTATGACAGTCCAGGGCCACATTCTTTTTGGCTTTATAAAATTGGT  900
      || |||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  TA-TTTATGACAGTCCAGGGCCACATTCTTTTTGGCTTTAT-AAATTGGG  897

seq1  TAATAATATAAAGCATAATTCCAGGACAAGACATGAAACTAAAAAACTAC  950
      |||||||||||||||| |||||| ||| ||||||||||||  ||||||||
seq2  TAATAATATAAAGCAT-ATTCCA-GAC-AGACATGAAACT--AAAACTAC  942

seq1  ATTATAGGCAAAAGGGGAACTTGAATAACAATTTTAAGAGTCACTCGCCA  1000
      |||||| ||||    || ||||||   |||   || ||||||||||| ||
seq2  ATTATA-GCAA----GGGACTTGA--TACA---TTTAGAGTCACTCG-CA  981

seq1  GAAAAGGAGAGTTCGCTATGTTCCAGGAGTGAAATGCAACAGCTCTACAT  1050
      ||||  ||||| ||||||||||||| ||||| ||||| |||||||||| |
seq2  GAAA--GAGAG-TCGCTATGTTCCA-GAGTG-AATGC-ACAGCTCTAC-T  1024

seq1  CATATAACTATGCTTCTGATATTTGTAATGACAACGCTAATGAAATAAGT  1100
      ||||| ||||||||||||| || | | ||||| ||||||||| ||| || 
seq2  CATAT-ACTATGCTTCTGA-ATATTTTATGAC-ACGCTAATG-AATTAGG  1070

seq1  TAGT-AGAGATCACACATACTTTGGAATTCTACATTCTAGTTTTAATTGC  1149
      |||| ||||||||||||||||   | |||| |||||| |||||    |||
seq2  TAGTAAGAGATCACACATACT---GGATTC-ACATTCAAGTTT---ATGC  1113

seq1  ATCCAGGTTCTAACTTGTTTCCTCTGA  1176
      || |||| |||||||||| | ||||||
seq2  AT-CAGGGTCTAACTTGTGT-CTCTGA  1138

seq1: chr6_10980357_10980878
seq2: B6Ng01-160I15.g_64_586 (reverse)

seq1  GAGTTGTTTTGATTTGCATTTCCCTTATGACTAAGGATGTTGAACATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTTTGATTTGCATTTCCCTTATGACTAAGGATGTTGAACATTTC  50

seq1  TTTATGTGCTTCTTGGCAATTCAGTATTCCTATATTGAAAATTCTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGCTTCTTGGCAATTCAGTATTCCTATATTGAAAATTCTTTGTT  100

seq1  TAGCTCTGTACCCCATTTTTAATAGCGTTATTTGGATCTTTGGAGTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGTACCCCATTTTTAATAGCGTTATTTGGATCTTTGGAGTTAAT  150

seq1  TTCTTGAGTTCTTTGCATATATTGGATATTAGCCCTGTATTGGACTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTCTTTGCATATATTGGATATTAGCCCTGTATTGGACTGATA  200

seq1  AAACCTTTTCCGACTCTGTTGGTTATCTTTTTGTCCTACTGCCAGTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTTCCGACTCTGTTGGTTATCTTTTTGTCCTACTGCCAGTGTCC  250

seq1  TTTGCGTTACAGAAGCTTTTCAATTTTATGAAATTACATTTGTCTATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTTACAGAAGCTTTTCAATTTTATGAAATTACATTTGTCTATAGT  300

seq1  TGATCTTACAGCCCAGACCATTGGTTTTCTGTTCAGGAAAATTTCCCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTACAGCCCAGACCATTGGTTTTCTGTTCAGGAAAATTTCCCCGT  350

seq1  GCCCATGTGCTTGAGGCTCTTCTCCAGATTTTCTTCTATTAGTTTTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTGCTTGAGGCTCTTCTCCAGATTTTCTTCTATTAGTTTTAGTG  400

seq1  TATCTGTTTTTATGTGCTGTTCCTTGATTGCCTTGCACTTGAGCTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTTTATGTGCTGTTCCTTGATTGCCTTGCACTTGAGCTTTGTA  450

seq1  CAAGGAGATAGATAAGAATGCATGGATTTGTGTTC-TTTTTTTTTTTTTT  499
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAGGAGATAGATAAGAATGCATGGATTTGTGTTCTTTTTTTTTTTTTTT  500

seq1  TTTTTTTGATTTCTGCTGAATTC  522
      |||||||||||||||||||||||
seq2  TTTTTTTGATTTCTGCTGAATTC  523