BAC Information

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BAC

Clone NameB6Ng01-161H17
Chromosome6 (Build37)16 (Build37)
Map Location 18,835,452 - 18,835,96854,578,909 - 54,579,963
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161H17.bB6Ng01-161H17.g
ACCDH954580DH954581
length9421,039
definitionDH954580|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H17, 5' end.DH954581|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,452 - 18,835,968)(54,578,909 - 54,579,963)
sequence
gaattctttgttcagttctaagccccattttttaatggggttattcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatttgttgttggtct
ttttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcctcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatatgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccattggatggtttttgctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttatctgtcgctataccagtaccatgtagtttttatcacaattgc
tctgtagtacagctttatgtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggctttttgttattccagatg
aatttgctgattgccctttataattcatttgaagaattgaattggaattt
tgatggggatttcattgtatctgtagattgcttttggcaagatagccatt
tttactctattgatcctgccaatccatgagcatgggaagatctttccatc
ttctgagatcttccttaattttctttcttcagagacttgaaaattcttat
catatagatcttttacttccttagtagagtcacgacaaggta
gaattctaaagatttggctagattatgattattgagggacatcattgagt
tgttaaaaataaatttgtttttacttgaaacatacaatcatacatagttg
ggcataatcatgtgatatttcaatactagaatacactgagcagtgcttat
tcaaatcaagcttcatgcatctctagaagcaggtattactaaatattttt
caggtaggtagcaactctgagtactttgatcggtgtatttttaggaaata
attgttcacagcaaggaattttatgttgtgatgaatattaagaatgccta
taagtttctctacgagtagttgcatctccagtatttgtggtctctttgag
gtagcctcagggacttaaagagcctgtgtgaaaccacttgagtacacaac
tgataaccacacaaatgaacatatcttgttttcttgcagggtcctgtagt
cctgatctttaaggtaatgaatgttcagtagtatgtgctcagcattagaa
tttttgtctgttctgcagctattaaaggcaggatcactgcctaattggtt
taatagagaactatatcattatttagaaaccaaaagataaatattttatg
ctaacaatattcaagttataatttagtagatatcattgtttgtatgagat
aagatgattgagatatttattacttttactaggtatcataactggttgtt
aaataagatggattgagatagctactattcaattattctgattaataaaa
aatgaaatacttgataaaactgtaggtgctttccagtggattatgtaaat
ttatccaaaagatcattgatgtttgtgcttaaatactatgaaatttaagt
cccttttctcttttaagtttaaaaaaatatcacaaataactactttatgc
agaggaaagaacatgaaaattaaatgaagcaaattccacatattatgctt
ttcttgttcttaggattttagacaagatttgctttacacaggattcagat
catctggagagttagatatatcaggttatattttgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835452_18835968
seq2: B6Ng01-161H17.b_46_563 (reverse)

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCAAAAACCATC  50

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100

seq1  GTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTA  150
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  GTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCATATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGG  250
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAGGATATGGGCACAGG  250

seq1  GGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAA  299
      |||||| ||||||||||||||||||||||| |||||||| || | |||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  399
      || ||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  ACTGTCAATAAGACAAAAAGACCAACAACAAATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  450

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  499
      |||||||||||||||||||||| |||||||||||||| |||||||||| |
seq2  AGAAGGTGGACTTCAGAAAATCGAATAACCCCATTAAAAAATGGGGCTTA  500

seq1  GAACTGAACAAAGAATTC  517
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr16_54578909_54579963
seq2: B6Ng01-161H17.g_67_1105 (reverse)

seq1  GAAGCAGAAATATAACTTGAATTATATCTATACTCTACAGATGATCTGAA  50
      |||||| ||||||||| |||  |||||||| ||||| |||||||||||||
seq2  GAAGCA-AAATATAACCTGA--TATATCTA-ACTCTCCAGATGATCTGAA  46

seq1  TTCCTGTGTTAAAGCAAATCTTTGTCTAAAATCCTAAGAACAAGAAAAAG  100
       ||||||| ||||||||||| ||||||||||||||||||||||| |||||
seq2  -TCCTGTG-TAAAGCAAATC-TTGTCTAAAATCCTAAGAACAAG-AAAAG  92

seq1  CATATTAATGTGGGATTTGCTTCATTTATATTTCATTGTTCTTTCCTTCT  150
      |||| | |||||| ||||||||||||||  ||||| |||||||||| |||
seq2  CATAAT-ATGTGGAATTTGCTTCATTTAATTTTCA-TGTTCTTTCC-TCT  139

seq1  GCATAAAGTAGTTATTTGTGAATATTTTTTTAAAACTTAAAAGAGAAAAA  200
      |||||||||||||||||||| |||||||||| ||||||||||||||||| 
seq2  GCATAAAGTAGTTATTTGTG-ATATTTTTTT-AAACTTAAAAGAGAAAAG  187

seq1  GGACTTAAATTTTCATAGTATTTAAGCACAAACATCAATGATCTTTTTGG  250
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  GGACTTAAA-TTTCATAGTATTTAAGCACAAACATCAATGATC-TTTTGG  235

seq1  ATAAATTTACATAATCCACTGGAAAGCACCTACAGTTTTATCAAGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTACATAATCCACTGGAAAGCACCTACAGTTTTATCAAGTATTT  285

seq1  CATTTTTTATTAATCAGAATAATTTGAATAGTAGCTATCTCAATCCATCT  350
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATTTTTTATTAATCAGAATAA-TTGAATAGTAGCTATCTCAATCCATCT  334

seq1  TATTTAACAACCAGTTATGATACCTAGTAAAAGTAATAAATATCTCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACAACCAGTTATGATACCTAGTAAAAGTAATAAATATCTCAATC  384

seq1  ATCTTATCTCATACAAACAATGATATCTACTAAATTATAACTTGAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCTCATACAAACAATGATATCTACTAAATTATAACTTGAATATT  434

seq1  GTTAGCATAAAATATTTATCTTTTGGTTTCTAAATAATGATATAGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATAAAATATTTATCTTTTGGTTTCTAAATAATGATATAGTTCTC  484

seq1  TATTAAACCAATTAGGCAGTGATCCTGCCTTTAATAGCTGCAGAACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACCAATTAGGCAGTGATCCTGCCTTTAATAGCTGCAGAACAGAC  534

seq1  AAAAATTCTAATGCTGAGCACATACTACTGAACATTCATTACCTTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCTAATGCTGAGCACATACTACTGAACATTCATTACCTTAAAGA  584

seq1  TCAGGACTACAGGACCCTGCAAGAAAACAAGATATGTTCATTTGTGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTACAGGACCCTGCAAGAAAACAAGATATGTTCATTTGTGTGGT  634

seq1  TATCAGTTGTGTACTCAAGTGGTTTCACACAGGCTCTTTAAGTCCCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTGTGTACTCAAGTGGTTTCACACAGGCTCTTTAAGTCCCTGAG  684

seq1  GCTACCTCAAAGAGACCACAAATACTGGAGATGCAACTACTCGTAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCAAAGAGACCACAAATACTGGAGATGCAACTACTCGTAGAGAA  734

seq1  ACTTATAGGCATTCTTAATATTCATCACAACATAAAATTCCTTGCTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAGGCATTCTTAATATTCATCACAACATAAAATTCCTTGCTGTGA  784

seq1  ACAATTATTTCCTAAAAATACACCGATCAAAGTACTCAGAGTTGCTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATTTCCTAAAAATACACCGATCAAAGTACTCAGAGTTGCTACCT  834

seq1  ACCTGAAAAATATTTAGTAATACCTGCTTCTAGAGATGCATGAAGCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAAATATTTAGTAATACCTGCTTCTAGAGATGCATGAAGCTTGA  884

seq1  TTTGAATAAGCACTGCTCAGTGTATTCTAGTATTGAAATATCACATGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAAGCACTGCTCAGTGTATTCTAGTATTGAAATATCACATGATT  934

seq1  ATGCCCAACTATGTATGATTGTATGTTTCAAGTAAAAACAAATTTATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAACTATGTATGATTGTATGTTTCAAGTAAAAACAAATTTATTTT  984

seq1  TAACAACTCAATGATGTCCCTCAATAATCATAATCTAGCCAAATCTTTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTCAATGATGTCCCTCAATAATCATAATCTAGCCAAATCTTTAG  1034

seq1  AATTC  1055
      |||||
seq2  AATTC  1039